Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

15582756 .. 15584524

Gene Structure 1769 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G189800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTTCACGTCTCCTTCTACCGCAACTATGGAAAGACGTTCAAGAAGCCGCGTCGCCCCTATGAGAAGGAGCGTTTGGATGCTGAGCTGAAGCTTGTTGGAGAGTATGGGCTCCGGTGCAAGAGAGAGCTGTGGAGGGTTCAGTATGCTCTGAGCCGTATCAGGAACAATGCAAGGATGCTTCTGACCCTGGATGAGAAGAACCCTCGTCGTATCTTCGAGGGCGAGGCTCTCCTCCGGAGGATGAACCGGTACGGGCTCTTGGAAGAGGGTCAGAACAAGCTTGATTATGTTTTGGCTTTGACTGTGGAGAACTTCCTTGAACGTCGCCTGCAGACAATTGTGTTCAAGACTGGTATGGCAAAGTCCATCCATCATGCCCGTGTGCTTATCAGGCAGAGGCATATCAGAGTTGGGAGGCAAGTGGTGAACATCTCTTCCTTCCTGGTGAGATGTGATTCAGAGAAGCACATTGATTTCTCACTCACAAGCCCATTAGGCGCTGGACGTCCCGGCAGAGTGAAGAGAAGAAACATGAAGGCAGCTGCCAAGAAGGCTGCTGGTGGAGATGCAGATGAAGAGGATGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

198

Amino Acids

23.04

Weight (kDa)

10.22

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	511
AccII	CGCG	1 cut(s)	52
AccIII	TCCGGA	1 cut(s)	237
AciI	CCGC	2 cut(s)	22, 50
AcuI	CTGAAG	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	508
AfaI	GTAC	1 cut(s)	254
AgeI	ACCGGT	1 cut(s)	249
AgsI	TTSAA	3 cut(s)	43, 323, 349
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	189, 444
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	5 cut(s)	88, 94, 130, 283, 545
AluI	AGCT	5 cut(s)	88, 94, 130, 283, 545
Alw26I	GTCTC	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	237
ApeKI	GCWGC	3 cut(s)	542, 545, 557
AsiGI	ACCGGT	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	439, 460
BanII	GRGCYC	2 cut(s)	114, 261
BbvI	GCAGC	3 cut(s)	532, 544, 554
BccI	CCATC	2 cut(s)	377, 381
BceAI	ACGGC	1 cut(s)	141
BciT130I	CCWGG	2 cut(s)	191, 446
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	16
BfmI	CTRYAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	504
BglI	GCCNNNNNGGC	2 cut(s)	498, 554
BisI	GCNGC	4 cut(s)	50, 543, 546, 558
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	4 cut(s)	51, 544, 547, 559
Bme1390I	CCNGG	3 cut(s)	191, 446, 513
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	3 cut(s)	191, 446, 513
BmsI	GCATC	3 cut(s)	70, 168, 559
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuMI	CCSGG	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	189
BsaWI	WCCGGW	3 cut(s)	114, 237, 249
Bse118I	RCCGGY	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	237
BseBI	CCWGG	2 cut(s)	191, 446
BseDI	CCNNGG	1 cut(s)	189
BseGI	GGATG	6 cut(s)	85, 183, 199, 249, 369, 589
BseMII	CTCAG	2 cut(s)	75, 143
BseNI	ACTGG	1 cut(s)	358
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	3 cut(s)	532, 544, 554
Bsh1236I	CGCG	1 cut(s)	52
BshTI	ACCGGT	1 cut(s)	249
BsiSI	CCGG	4 cut(s)	115, 238, 250, 513
BslFI	GGGAC	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	16
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	495
Bsp1286I	GDGCHC	2 cut(s)	114, 261
Bsp13I	TCCGGA	1 cut(s)	237
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	2 cut(s)	22, 50
BspCNI	CTCAG	2 cut(s)	76, 144
BspEI	TCCGGA	1 cut(s)	237
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	113
BspMAI	CTGCAG	1 cut(s)	336
BsrFI	RCCGGY	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	249
BssECI	CCNNGG	1 cut(s)	189
BssNI	GRCGYC	1 cut(s)	508
Bst2UI	CCWGG	2 cut(s)	191, 446
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	4 cut(s)	261, 442, 518, 573
BstACI	GRCGYC	1 cut(s)	508
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	84, 152
BstF5I	GGATG	6 cut(s)	85, 183, 199, 249, 369, 589
BstFNI	CGCG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	504
BstHHI	GCGC	1 cut(s)	503
BstMAI	GTCTC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 498, 554
BstNI	CCWGG	2 cut(s)	191, 446
BstSCI	CCNGG	3 cut(s)	189, 444, 511
BstSFI	CTRYAG	1 cut(s)	332
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	532, 544, 554
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	6 cut(s)	85, 183, 199, 249, 369, 589
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	503
Cfr10I	RCCGGY	1 cut(s)	249
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	253
CspAI	ACCGGT	1 cut(s)	249
CviAII	CATG	2 cut(s)	377, 535
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	2 cut(s)	84, 152
Eam1104I	CTCTTC	4 cut(s)	261, 442, 518, 573
EarI	CTCTTC	4 cut(s)	261, 442, 518, 573
Eco24I	GRGCYC	2 cut(s)	114, 261
Eco57I	CTGAAG	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	189, 444
EcoT38I	GRGCYC	2 cut(s)	114, 261
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	2 cut(s)	380, 538
FaiI	YATR	9 cut(s)	30, 63, 108, 147, 291, 359, 378, 405, 536
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	2 cut(s)	376, 534
Fnu4HI	GCNGC	4 cut(s)	50, 543, 546, 558
FokI	GGATG	5 cut(s)	92, 190, 206, 256, 356
FriOI	GRGCYC	2 cut(s)	114, 261
Fsp4HI	GCNGC	4 cut(s)	50, 543, 546, 558
GlaI	GCGC	1 cut(s)	502
GluI	GCNGC	4 cut(s)	50, 543, 546, 558
HaeII	RGCGCY	1 cut(s)	504
HapII	CCGG	4 cut(s)	115, 238, 250, 513
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	503
Hin1I	GRCGYC	1 cut(s)	508
Hin1II	CATG	2 cut(s)	380, 538
Hin6I	GCGC	1 cut(s)	501
HinP1I	GCGC	1 cut(s)	501
HindIII	AAGCTT	2 cut(s)	92, 281
HinfI	GANTC	1 cut(s)	458
HpaII	CCGG	4 cut(s)	115, 238, 250, 513
HphI	GGTGA	2 cut(s)	439, 460
Hpy166II	GTNNAC	2 cut(s)	7, 430
Hpy188I	TCNGA	5 cut(s)	153, 186, 276, 410, 463
Hpy188III	TCNNGA	4 cut(s)	43, 163, 238, 349
Hpy8I	GTNNAC	2 cut(s)	7, 430
Hpy99I	CGWCG	3 cut(s)	57, 213, 330
HpyAV	CCTTC	5 cut(s)	25, 61, 451, 532, 547
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	4 cut(s)	9, 38, 325, 508
HpyCH4V	TGCA	4 cut(s)	120, 173, 334, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 498, 554
HpyF3I	CTNAG	2 cut(s)	84, 152
HpySE526I	ACGT	4 cut(s)	9, 38, 325, 508
Hsp92I	GRCGYC	1 cut(s)	508
Hsp92II	CATG	2 cut(s)	380, 538
HspAI	GCGC	1 cut(s)	501
Kpn2I	TCCGGA	1 cut(s)	237
LmnI	GCTCC	2 cut(s)	70, 117
Lsp1109I	GCAGC	3 cut(s)	532, 544, 554
LweI	GCATC	3 cut(s)	70, 168, 559
MaeII	ACGT	4 cut(s)	9, 38, 325, 508
MboII	GAAGA	7 cut(s)	208, 211, 278, 429, 535, 540, 590
MfeI	CAATTG	1 cut(s)	339
MhlI	GDGCHC	2 cut(s)	114, 261
MluCI	AATT	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	79
MroI	TCCGGA	1 cut(s)	237
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	4 cut(s)	115, 238, 250, 513
MspR9I	CCNGG	3 cut(s)	191, 446, 513
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	2 cut(s)	191, 446
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	3 cut(s)	394, 498, 554
NciI	CCSGG	1 cut(s)	513
NlaIII	CATG	2 cut(s)	380, 538
NlaIV	GGNNCC	1 cut(s)	113
PfeI	GAWTC	1 cut(s)	458
PinAI	ACCGGT	1 cut(s)	249
PkrI	GCNGC	4 cut(s)	51, 544, 547, 559
Psp6I	CCWGG	2 cut(s)	189, 444
PspGI	CCWGG	2 cut(s)	189, 444
PspN4I	GGNNCC	1 cut(s)	113
PstI	CTGCAG	1 cut(s)	336
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	381
SatI	GCNGC	4 cut(s)	50, 543, 546, 558
ScrFI	CCNGG	3 cut(s)	191, 446, 513
SduI	GDGCHC	2 cut(s)	114, 261
SetI	ASST	9 cut(s)	12, 41, 90, 96, 132, 285, 328, 511, 547
SfaNI	GCATC	3 cut(s)	70, 168, 559
SfcI	CTRYAG	1 cut(s)	332
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	2 cut(s)	22, 50
StyD4I	CCNGG	3 cut(s)	189, 444, 511
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	4 cut(s)	12, 41, 328, 511
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	339
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	458
TseI	GCWGC	3 cut(s)	542, 545, 557
TspDTI	ATGAA	3 cut(s)	260, 551, 591
ZraI	GACGTC	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.