Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

2652079 .. 2653651

Gene Structure 1573 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG039400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTTCACGTCGTGTTCTATCGGAACTATGGCAAGACGTTTAAGAAGCCCCGTCGGCCTTATGAGAAGGAGCGTTTGGATGCTGAGCTGAAGCTGGTGGGAGAGTATGGGCTGCGTTGCAAGAGAGAGCTCTGGAGGGTTCAGTATGCTCTCAGCCGAATCCGTAACAATGCAAGGATGCTTCTGACCCTTGACGAGAAGAACCCTCGTCGGATCTTTGAGGGTGAGGCGCTTCTTCGGAGGATGAACCGTTATGGGCTTTTGGACGAGGGGCAGAACAAGCTTGATTATGTTTTGGCTTTGACTGTGGAGAACTTCCTTGAGCGTCGCCTGCAGACAGTTGTGTTTAAGAAGGGTTTGGCAAAGTCCATTCATCATGCCCGTGTGCTCATCAGGCAGAGGCATATCAGAGTCGGAAGGCAAGTGGTGAACATTCCATCCTTCATGGTCAGATGTGATTCCGAGAAGCACATTGATTTTGCTATTACAAGTCCATTGGGTGGCGGAGGTCCCGGTAGAGTCAAGAGAAGGAACTTGAAGGCAGCTGCCAAGAAGGCTTCTGGTGGAGGAGATGATGAAGAGGATGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

197

Amino Acids

22.93

Weight (kDa)

10.17

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	8 - 108	4.9e-14	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	109 - 151	3.3e-13	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	500
AciI	CCGC	1 cut(s)	504
AclWI	GGATC	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	110
AdeI	CACNNNGTG	1 cut(s)	13
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	1 cut(s)	538
AjiI	CACGTC	1 cut(s)	10
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	5 cut(s)	88, 94, 130, 283, 545
AluI	AGCT	5 cut(s)	88, 94, 130, 283, 545
Alw21I	GWGCWC	2 cut(s)	132, 390
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	56
ApeKI	GCWGC	3 cut(s)	112, 542, 545
AspLEI	GCGC	1 cut(s)	232
AspS9I	GGNCC	1 cut(s)	509
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	2 cut(s)	236, 439
AvaII	GGWCC	1 cut(s)	509
BanII	GRGCYC	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	132, 390
BbvI	GCAGC	3 cut(s)	99, 532, 554
BccI	CCATC	1 cut(s)	445
BcnI	CCSGG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	233
BglI	GCCNNNNNGGC	2 cut(s)	55, 554
BisI	GCNGC	3 cut(s)	113, 543, 546
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	3 cut(s)	114, 544, 547
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	509
BmgBI	CACGTC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	509
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	70, 168
BpmI	CTGGAG	1 cut(s)	154
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	513
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
BseGI	GGATG	5 cut(s)	85, 183, 249, 437, 589
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	2 cut(s)	75, 166
BseRI	GAGGAG	1 cut(s)	582
BseXI	GCAGC	3 cut(s)	99, 532, 554
BshFI	GGCC	1 cut(s)	58
BsiHKAI	GWGCWC	2 cut(s)	132, 390
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	132, 390
Bsp143I	GATC	1 cut(s)	213
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	504
BspANI	GGCC	1 cut(s)	58
BspCNI	CTCAG	2 cut(s)	76, 165
BspLI	GGNNCC	1 cut(s)	511
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	221
BssMI	GATC	1 cut(s)	213
Bst4CI	ACNGT	3 cut(s)	251, 307, 340
Bst6I	CTCTTC	1 cut(s)	573
BstC8I	GCNNGC	1 cut(s)	332
BstDEI	CTNAG	2 cut(s)	84, 152
BstF5I	GGATG	5 cut(s)	85, 183, 249, 437, 589
BstH2I	RGCGCY	1 cut(s)	233
BstHHI	GCGC	1 cut(s)	232
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	5 cut(s)	55, 280, 331, 394, 554
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	3 cut(s)	99, 532, 554
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	58
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	5 cut(s)	85, 183, 249, 437, 589
Cac8I	GCNNGC	1 cut(s)	332
CfoI	GCGC	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	509
CseI	GACGC	1 cut(s)	314
CviAII	CATG	2 cut(s)	377, 445
DdeI	CTNAG	2 cut(s)	84, 152
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
DraIII	CACNNNGTG	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	519
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	509
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	130
EcoO109I	RGGNCCY	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	2 cut(s)	380, 448
FaiI	YATR	9 cut(s)	30, 63, 108, 147, 255, 291, 378, 405, 446
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	2 cut(s)	376, 444
Fnu4HI	GCNGC	3 cut(s)	113, 543, 546
FokI	GGATG	4 cut(s)	92, 190, 256, 424
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	3 cut(s)	113, 543, 546
GlaI	GCGC	1 cut(s)	231
GluI	GCNGC	3 cut(s)	113, 543, 546
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	513
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	232
Hin1II	CATG	2 cut(s)	380, 448
Hin6I	GCGC	1 cut(s)	230
HinP1I	GCGC	1 cut(s)	230
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	4 cut(s)	159, 411, 458, 519
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	2 cut(s)	236, 439
Hpy166II	GTNNAC	2 cut(s)	7, 430
Hpy188I	TCNGA	8 cut(s)	24, 186, 213, 240, 410, 416, 452, 463
Hpy188III	TCNNGA	2 cut(s)	133, 523
Hpy8I	GTNNAC	2 cut(s)	7, 430
Hpy99I	CGWCG	4 cut(s)	14, 57, 213, 330
HpyAV	CCTTC	7 cut(s)	61, 346, 411, 451, 522, 532, 547
HpyCH4III	ACNGT	3 cut(s)	251, 307, 340
HpyCH4IV	ACGT	2 cut(s)	9, 38
HpyCH4V	TGCA	3 cut(s)	120, 173, 334
HpyF10VI	GCNNNNNNNGC	5 cut(s)	55, 280, 331, 394, 554
HpyF3I	CTNAG	2 cut(s)	84, 152
HpySE526I	ACGT	2 cut(s)	9, 38
Hsp92II	CATG	2 cut(s)	380, 448
HspAI	GCGC	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	213
LmnI	GCTCC	1 cut(s)	70
LpnPI	CCDG	6 cut(s)	80, 118, 344, 379, 526, 546
Lsp1109I	GCAGC	3 cut(s)	99, 532, 554
LweI	GCATC	2 cut(s)	70, 168
MaeII	ACGT	2 cut(s)	9, 38
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	215
MboI	GATC	1 cut(s)	213
MboII	GAAGA	3 cut(s)	211, 227, 590
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	132, 390
MlyI	GAGTC	2 cut(s)	420, 528
MmeI	TCCRAC	2 cut(s)	191, 394
MseI	TTAA	2 cut(s)	42, 348
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	5 cut(s)	55, 280, 331, 394, 554
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	1 cut(s)	213
NlaIII	CATG	2 cut(s)	380, 448
NlaIV	GGNNCC	1 cut(s)	511
PfeI	GAWTC	2 cut(s)	159, 458
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	3 cut(s)	114, 544, 547
PleI	GAGTC	2 cut(s)	419, 527
PpsI	GAGTC	2 cut(s)	419, 527
PpuMI	RGGWCCY	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	132
Psp5II	RGGWCCY	1 cut(s)	509
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	509
PspPPI	RGGWCCY	1 cut(s)	509
PstI	CTGCAG	1 cut(s)	336
PsuI	RGATCY	1 cut(s)	213
PvuII	CAGCTG	1 cut(s)	545
RseI	CAYNNNNRTG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	132
SaqAI	TTAA	2 cut(s)	42, 348
SatI	GCNGC	3 cut(s)	113, 543, 546
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	509
SchI	GAGTC	2 cut(s)	420, 528
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	132, 390
SetI	ASST	8 cut(s)	12, 41, 90, 96, 132, 285, 511, 547
SfaNI	GCATC	2 cut(s)	70, 168
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SsiI	CCGC	1 cut(s)	504
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	251, 307, 340
TaiI	ACGT	2 cut(s)	12, 41
TfiI	GAWTC	2 cut(s)	159, 458
Tru1I	TTAA	2 cut(s)	42, 348
Tru9I	TTAA	2 cut(s)	42, 348
TseI	GCWGC	3 cut(s)	112, 542, 545
TspDTI	ATGAA	4 cut(s)	260, 362, 433, 591
TspGWI	ACGGA	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.