Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

5487977 .. 5490053

Gene Structure 2077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00082730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGCTTCGGTGCAAAGAGGGAGTTGTGGAGGGTTCAGTATGCTTTGAGCCGCATCCGTAATGCTGCCAGGGAACTTCTTACCCTGGATGAGAAGAATCCTCGCCGTATCTTTGAGGGTGAGGCTCTTCTGCGCAGGATGAACAGGTATGGGCTTCTGGAAGAGAGCCAGAACAAGCTCGATTACGTCCTTGCACTCACTGTTGAGAACTTCCTTGAGAGGCGTCTGCAGACCCAAGTGTTCAAATCTGGTATGGCCAAGTCCATCCATCACGCCAGGGTTCTCATCAGGCAAAGGCACATCAGGGTTGGAAGGCAGGTGGTGAACATTCCATCATTCATGGTGAGAATTGATTCCGAGAAGCACATCGACTTTGCCATCACAAGTCCCCTTGGAGGAGGCCGCCCCGGAAGAGTGAAGAGAAGGAACCAGAAGGCCGCTGCTAAGAAGGCAGCTGGTGGTGATGGAGATGAGGAAGATGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

162

Amino Acids

18.64

Weight (kDa)

10.42

Isoelectric Point (pI)

62.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	5 - 73	6.4e-10	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	74 - 117	1.6e-12	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	307
Acc16I	TGCGCA	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	307
AciI	CCGC	3 cut(s)	52, 403, 438
AcoI	YGGCCR	1 cut(s)	255
AcyI	GRCGYC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	3 cut(s)	68, 84, 275
AluBI	AGCT	2 cut(s)	178, 455
AluI	AGCT	2 cut(s)	178, 455
AoxI	GGCC	3 cut(s)	255, 400, 435
ApeKI	GCWGC	3 cut(s)	65, 440, 452
Asp700I	GAANNNNTTC	1 cut(s)	352
AspLEI	GCGC	1 cut(s)	135
AsuC2I	CCSGG	1 cut(s)	408
AsuHPI	GGTGA	4 cut(s)	131, 334, 355, 473
BalI	TGGCCA	1 cut(s)	257
BbvI	GCAGC	3 cut(s)	52, 427, 464
BccI	CCATC	5 cut(s)	272, 276, 340, 386, 458
BceAI	ACGGC	1 cut(s)	90
BciT130I	CCWGG	3 cut(s)	70, 86, 277
BcnI	CCSGG	1 cut(s)	408
BfmI	CTRYAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	307
BisI	GCNGC	6 cut(s)	52, 66, 403, 438, 441, 453
BlsI	GCNGC	6 cut(s)	53, 67, 404, 439, 442, 454
Bme1390I	CCNGG	4 cut(s)	70, 86, 277, 408
BmiI	GGNNCC	1 cut(s)	428
BmrFI	CCNGG	4 cut(s)	70, 86, 277, 408
BmsI	GCATC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	223
BsaJI	CCNNGG	5 cut(s)	69, 84, 276, 391, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
BseBI	CCWGG	3 cut(s)	70, 86, 277
BseDI	CCNNGG	5 cut(s)	69, 84, 276, 391, 406
BseGI	GGATG	4 cut(s)	54, 94, 144, 264
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	3 cut(s)	52, 427, 464
BshFI	GGCC	3 cut(s)	257, 402, 437
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	1 cut(s)	372
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	372
BsnI	GGCC	3 cut(s)	257, 402, 437
BspACI	CCGC	3 cut(s)	52, 403, 438
BspANI	GGCC	3 cut(s)	257, 402, 437
BspLI	GGNNCC	1 cut(s)	428
BspMAI	CTGCAG	1 cut(s)	231
BspMI	ACCTGC	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	132
BssECI	CCNNGG	5 cut(s)	69, 84, 276, 391, 406
BssNI	GRCGYC	1 cut(s)	223
BssT1I	CCWWGG	1 cut(s)	391
Bst2UI	CCWGG	3 cut(s)	70, 86, 277
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	4 cut(s)	132, 156, 406, 413
BstACI	GRCGYC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	4 cut(s)	54, 94, 144, 264
BstHHI	GCGC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	3 cut(s)	70, 86, 277
BstSCI	CCNGG	4 cut(s)	68, 84, 275, 406
BstSFI	CTRYAG	1 cut(s)	227
BstV1I	GCAGC	3 cut(s)	52, 427, 464
BsuRI	GGCC	3 cut(s)	257, 402, 437
BtsCI	GGATG	4 cut(s)	54, 94, 144, 264
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	1 cut(s)	307
CfoI	GCGC	1 cut(s)	135
CseI	GACGC	1 cut(s)	212
CviAII	CATG	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	444
EaeI	YGGCCR	1 cut(s)	255
Eam1104I	CTCTTC	4 cut(s)	132, 156, 406, 413
EarI	CTCTTC	4 cut(s)	132, 156, 406, 413
Eco130I	CCWWGG	1 cut(s)	391
EcoRII	CCWGG	3 cut(s)	68, 84, 275
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
FaeI	CATG	1 cut(s)	343
FaiI	YATR	4 cut(s)	42, 150, 254, 341
FaqI	GGGAC	1 cut(s)	372
FatI	CATG	1 cut(s)	339
Fnu4HI	GCNGC	6 cut(s)	52, 66, 403, 438, 441, 453
FokI	GGATG	4 cut(s)	41, 101, 151, 251
Fsp4HI	GCNGC	6 cut(s)	52, 66, 403, 438, 441, 453
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	6 cut(s)	52, 66, 403, 438, 441, 453
HaeIII	GGCC	3 cut(s)	257, 402, 437
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HinfI	GANTC	2 cut(s)	97, 353
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	4 cut(s)	131, 334, 355, 473
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	358
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	4 cut(s)	306, 417, 427, 442
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	14, 194, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	343
HspAI	GCGC	1 cut(s)	133
LguI	GCTCTTC	1 cut(s)	132
Lsp1109I	GCAGC	3 cut(s)	52, 427, 464
LweI	GCATC	1 cut(s)	63
MaeII	ACGT	1 cut(s)	186
MboII	GAAGA	6 cut(s)	106, 119, 173, 423, 430, 488
MlsI	TGGCCA	1 cut(s)	257
MluCI	AATT	1 cut(s)	348
MluNI	TGGCCA	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	289
Mox20I	TGGCCA	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	257
MspA1I	CMGCKG	2 cut(s)	440, 455
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	4 cut(s)	70, 86, 277, 408
MvaI	CCWGG	3 cut(s)	70, 86, 277
MwoI	GCNNNNNNNGC	1 cut(s)	449
NciI	CCSGG	1 cut(s)	408
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	428
NsbI	TGCGCA	1 cut(s)	134
PaqCI	CACCTGC	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	132
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	2 cut(s)	97, 353
PkrI	GCNGC	6 cut(s)	53, 67, 404, 439, 442, 454
Psp6I	CCWGG	3 cut(s)	68, 84, 275
PspGI	CCWGG	3 cut(s)	68, 84, 275
PspN4I	GGNNCC	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	231
PvuII	CAGCTG	1 cut(s)	455
SapI	GCTCTTC	1 cut(s)	132
SatI	GCNGC	6 cut(s)	52, 66, 403, 438, 441, 453
ScrFI	CCNGG	4 cut(s)	70, 86, 277, 408
SetI	ASST	5 cut(s)	149, 180, 189, 321, 457
SfaNI	GCATC	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
Sse9I	AATT	1 cut(s)	348
SsiI	CCGC	3 cut(s)	52, 403, 438
StyD4I	CCNGG	4 cut(s)	68, 84, 275, 406
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	2 cut(s)	180, 369
TasI	AATT	1 cut(s)	348
TauI	GCSGC	3 cut(s)	54, 405, 440
TfiI	GAWTC	2 cut(s)	97, 353
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	3 cut(s)	65, 440, 452
TspDTI	ATGAA	2 cut(s)	155, 328
TspGWI	ACGGA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	205
XmnI	GAANNNNTTC	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.