Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Forward (+)

25099273 .. 25101811

Gene Structure 2539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G269100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTGCACGTTAGCTTCTACCGCAACTACGGGAAGACTTTTAAGAAGCCACGACGTCCTTATGAGAAGGAGCGTCTGGATGCTGAGTTGAAGCTGGTTGGAGAATATGGGCTTCGATGCAAGAGGGAGTTGTGGAGAGTTCAGTATGCTTTGAGTCGTATCCGAAATGCTGCTAGGGAACTTCTTACTCTGGATGAGAAAAGTCCTCGCCGTATCTTTGAGGGTGAGGCCCTTCTTCGCAGGATGAACAGGTATGGGCTTCTGGAAGAGACCCAAAACAAGCTCGATTATGTTTTGGCATTGACTGTGGAGAACTTTTTGGAGCGTCGGCTTCAAACCCTTGTGTTCAAGACTGGTATGGCTAAGTCCATCCACCACGCTAGGGTGCTTATAAGGCAAAGGCACATCAGGGTTGGAAGGCAGGTTGTCAACATCCCATCTTTCATGGTGAGGGTTGACTCCCAGAAGCACATTGACTTCTCAATCACTAGTCCCCTCGGAGGTGGGCGCCCCGGAAGAGTGAAGAGAAGGAACCAGAAGGCAGCTGCCAAGAAGGCTGCAGGTGGTGGTGATGGAGACGAAGAAGATGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

199

Amino Acids

23.08

Weight (kDa)

10.29

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AarI	CACCTGC	1 cut(s)	551
AatII	GACGTC	1 cut(s)	58
Acc36I	ACCTGC	2 cut(s)	412, 551
AccB1I	GGYRCC	1 cut(s)	507
AciI	CCGC	1 cut(s)	22
AcyI	GRCGYC	2 cut(s)	55, 508
AfiI	CCNNNNNNNGG	2 cut(s)	382, 500
AgsI	TTSAA	3 cut(s)	91, 335, 349
AhlI	ACTAGT	1 cut(s)	488
AluBI	AGCT	4 cut(s)	15, 94, 283, 545
AluI	AGCT	4 cut(s)	15, 94, 283, 545
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	263, 570
Alw44I	GTGCAC	1 cut(s)	5
AoxI	GGCC	1 cut(s)	228
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	4 cut(s)	170, 542, 545, 557
AspLEI	GCGC	1 cut(s)	510
AspS9I	GGNCC	1 cut(s)	229
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	3 cut(s)	236, 460, 581
BaeGI	GKGCMC	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	4 cut(s)	157, 532, 544, 554
BccI	CCATC	3 cut(s)	377, 445, 566
BceAI	ACGGC	1 cut(s)	195
BciVI	GTATCC	1 cut(s)	170
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	2 cut(s)	263, 570
BcuI	ACTAGT	1 cut(s)	488
BfaI	CTAG	3 cut(s)	174, 381, 489
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	511
BfuAI	ACCTGC	2 cut(s)	412, 551
BfuI	GTATCC	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	554
BisI	GCNGC	4 cut(s)	171, 543, 546, 558
BlsI	GCNGC	4 cut(s)	172, 544, 547, 559
Bme1390I	CCNGG	1 cut(s)	513
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	2 cut(s)	509, 533
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	70, 107
BpiI	GAAGAC	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	513
BsaHI	GRCGYC	2 cut(s)	55, 508
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	2 cut(s)	496, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	382, 500
Bse1I	ACTGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	496, 511
BseGI	GGATG	5 cut(s)	85, 199, 249, 369, 432
BseLI	CCNNNNNNNGG	2 cut(s)	382, 500
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	4 cut(s)	157, 532, 544, 554
BshFI	GGCC	1 cut(s)	230
BshNI	GGYRCC	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	2 cut(s)	382, 500
BsmAI	GTCTC	2 cut(s)	263, 570
BsmBI	CGTCTC	1 cut(s)	570
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	230
Bso31I	GGTCTC	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	9
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	230
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	509, 533
BspMAI	CTGCAG	1 cut(s)	562
BspMI	ACCTGC	2 cut(s)	412, 551
BspT107I	GGYRCC	1 cut(s)	507
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	496, 511
BssNI	GRCGYC	2 cut(s)	55, 508
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	4 cut(s)	261, 511, 518, 585
BstACI	GRCGYC	2 cut(s)	55, 508
BstDEI	CTNAG	2 cut(s)	84, 363
BstF5I	GGATG	5 cut(s)	85, 199, 249, 369, 432
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstMAI	GTCTC	2 cut(s)	263, 570
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 394, 554
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	4 cut(s)	157, 532, 544, 554
BstV2I	GAAGAC	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	230
BtsCI	GGATG	5 cut(s)	85, 199, 249, 369, 432
BveI	ACCTGC	2 cut(s)	412, 551
CfoI	GCGC	1 cut(s)	510
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	2 cut(s)	62, 314
CviAII	CATG	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	84, 363
DinI	GGCGCC	1 cut(s)	509
Eam1104I	CTCTTC	4 cut(s)	261, 511, 518, 585
EarI	CTCTTC	4 cut(s)	261, 511, 518, 585
Eco31I	GGTCTC	1 cut(s)	263
EcoO109I	RGGNCCY	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	509
EheI	GGCGCC	1 cut(s)	509
Esp3I	CGTCTC	1 cut(s)	570
FaeI	CATG	1 cut(s)	448
FaiI	YATR	8 cut(s)	63, 108, 147, 255, 291, 359, 392, 446
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	171, 543, 546, 558
FokI	GGATG	5 cut(s)	92, 206, 256, 356, 419
Fsp4HI	GCNGC	4 cut(s)	171, 543, 546, 558
FspBI	CTAG	3 cut(s)	174, 381, 489
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	4 cut(s)	171, 543, 546, 558
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	230
HapII	CCGG	1 cut(s)	513
HgaI	GACGC	2 cut(s)	62, 314
HhaI	GCGC	1 cut(s)	510
Hin1I	GRCGYC	2 cut(s)	55, 508
Hin1II	CATG	1 cut(s)	448
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HincII	GTYRAC	2 cut(s)	430, 457
HindII	GTYRAC	2 cut(s)	430, 457
HinfI	GANTC	2 cut(s)	154, 458
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	3 cut(s)	236, 460, 581
Hpy166II	GTNNAC	3 cut(s)	7, 430, 457
Hpy188I	TCNGA	2 cut(s)	164, 500
Hpy188III	TCNNGA	4 cut(s)	77, 191, 263, 349
Hpy8I	GTNNAC	3 cut(s)	7, 430, 457
Hpy99I	CGWCG	2 cut(s)	57, 330
HpyAV	CCTTC	6 cut(s)	61, 242, 411, 522, 532, 547
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	2 cut(s)	9, 55
HpyCH4V	TGCA	3 cut(s)	7, 120, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 394, 554
HpyF3I	CTNAG	2 cut(s)	84, 363
HpySE526I	ACGT	2 cut(s)	9, 55
Hsp92I	GRCGYC	2 cut(s)	55, 508
Hsp92II	CATG	1 cut(s)	448
HspAI	GCGC	1 cut(s)	508
KasI	GGCGCC	1 cut(s)	507
LmnI	GCTCC	2 cut(s)	70, 322
Lsp1109I	GCAGC	4 cut(s)	157, 532, 544, 554
LweI	GCATC	2 cut(s)	70, 107
MaeI	CTAG	3 cut(s)	174, 381, 489
MaeII	ACGT	2 cut(s)	9, 55
MboII	GAAGA	7 cut(s)	46, 227, 278, 528, 535, 593, 596
MhlI	GDGCHC	1 cut(s)	9
Mly113I	GGCGCC	1 cut(s)	508
MlyI	GAGTC	2 cut(s)	163, 452
MmeI	TCCRAC	2 cut(s)	79, 394
MnlI	CCTC	7 cut(s)	117, 214, 216, 220, 444, 494, 506
MseI	TTAA	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	3 cut(s)	21, 394, 554
NarI	GGCGCC	1 cut(s)	508
NciI	CCSGG	1 cut(s)	513
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	2 cut(s)	509, 533
PaqCI	CACCTGC	1 cut(s)	551
PkrI	GCNGC	4 cut(s)	172, 544, 547, 559
PleI	GAGTC	2 cut(s)	162, 452
PluTI	GGCGCC	1 cut(s)	511
PpsI	GAGTC	2 cut(s)	162, 452
PsiI	TTATAA	1 cut(s)	392
PspN4I	GGNNCC	2 cut(s)	509, 533
PspPI	GGNCC	1 cut(s)	229
PstI	CTGCAG	1 cut(s)	562
PvuII	CAGCTG	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	4 cut(s)	171, 543, 546, 558
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	2 cut(s)	163, 452
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	70, 107
SfcI	CTRYAG	1 cut(s)	558
SfoI	GGCGCC	1 cut(s)	509
SpeI	ACTAGT	1 cut(s)	488
SsiI	CCGC	1 cut(s)	22
SspDI	GGCGCC	1 cut(s)	507
SspMI	CTAG	3 cut(s)	174, 381, 489
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	2 cut(s)	12, 58
TaqI	TCGA	2 cut(s)	115, 285
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseI	GCWGC	4 cut(s)	170, 542, 545, 557
TspDTI	ATGAA	2 cut(s)	260, 433
VneI	GTGCAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	174, 381, 489
ZraI	GACGTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.