Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Forward (+)

15949910 .. 15951475

Gene Structure 1566 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTTAACGTCAGATTCTACCGAAACTATGGGAAAACATTCAAGAAGCCACGTCGTCCTTATGAGAAAGAGCGTCTTGATGCTGAGCTAAAGCTTGTTGGAGAATACGGTCTTCGTTGTAAGAGAGAGCTTTGGAGAGTTCAATATACACTTAGCAGAATCCGTAATGCTGCAAGAGAACTCTTAACTCTTGATGAGAAGAATCCTCGTCGTATCTTTGAAGGTGAAGCTCTTCTTAGGAGAATGAATCGATATGGTCTTCTTGATGAAACCCAGAACAAGCTTGATTATGTTCTTGCTTTGACTGTTGAGAATTTCCTTGAACGTCGTCTCCAAACTATTGTCTTTAAGTCTGGTATGGCTAAGTCCATTCACCACGCTCGTGTCCTTATCCGACAAAGGCATATCAGGGTTGGGAGGCAACTTGTGAACATTCCATCGTTTATGGTGAGAGTAGAGTCACAGAAGCACGTAGACTTTTCTCTAACCAGTCCATTCGGTGGTGGTCGACCTGGAAGAGTGAAGAGAAGGAACGAGAGAGCCGGAGCTAAGAAAGCTTCTGGTGGTGATGGAGATGAGGATGATGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071944 GO:0080090 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

197

Amino Acids

23.16

Weight (kDa)

10.34

Isoelectric Point (pI)

46.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	8 - 108	2.8e-14	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	109 - 153	8.2e-13	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	500
AccI	GTMKAC	2 cut(s)	474, 508
AcsI	RAATTY	1 cut(s)	313
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	4 cut(s)	43, 143, 221, 323
AjiI	CACGTC	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	381
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	7 cut(s)	88, 94, 130, 230, 283, 548, 557
AluI	AGCT	7 cut(s)	88, 94, 130, 230, 283, 548, 557
Alw26I	GTCTC	1 cut(s)	335
ApeKI	GCWGC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	313
Asp700I	GAANNNNTTC	2 cut(s)	38, 231
AsuHPI	GGTGA	4 cut(s)	236, 365, 460, 578
BauI	CACGAG	1 cut(s)	381
BbsI	GAAGAC	2 cut(s)	104, 251
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	445, 563
BciT130I	CCWGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	335
BisI	GCNGC	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	513
BmgBI	CACGTC	1 cut(s)	53
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	2 cut(s)	104, 251
Bpu1102I	GCTNAGC	1 cut(s)	84
Bsa29I	ATCGAT	1 cut(s)	250
BsaAI	YACGTR	1 cut(s)	472
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	513
BseCI	ATCGAT	1 cut(s)	250
BseGI	GGATG	1 cut(s)	586
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	157
BshVI	ATCGAT	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	543
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	335
BsmBI	CGTCTC	1 cut(s)	335
Bsp1720I	GCTNAGC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	76
BspDI	ATCGAT	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	489
BssSI	CACGAG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	110, 307
Bst6I	CTCTTC	4 cut(s)	237, 511, 518, 582
BstBAI	YACGTR	1 cut(s)	472
BstDEI	CTNAG	5 cut(s)	84, 152, 236, 363, 549
BstF5I	GGATG	1 cut(s)	586
BstMAI	GTCTC	1 cut(s)	335
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	2 cut(s)	104, 251
Bsu15I	ATCGAT	1 cut(s)	250
BsuTUI	ATCGAT	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	586
ClaI	ATCGAT	1 cut(s)	250
CseI	GACGC	1 cut(s)	62
DdeI	CTNAG	5 cut(s)	84, 152, 236, 363, 549
Eam1104I	CTCTTC	4 cut(s)	237, 511, 518, 582
EarI	CTCTTC	4 cut(s)	237, 511, 518, 582
EcoRII	CCWGG	1 cut(s)	511
Esp3I	CGTCTC	1 cut(s)	335
FaiI	YATR	8 cut(s)	30, 63, 147, 255, 291, 359, 405, 446
FalI	AAGNNNNNCTT	4 cut(s)	60, 92, 219, 251
FblI	GTMKAC	2 cut(s)	474, 508
Fnu4HI	GCNGC	1 cut(s)	171
Fsp4HI	GCNGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	171
HapII	CCGG	1 cut(s)	543
HgaI	GACGC	1 cut(s)	62
HincII	GTYRAC	2 cut(s)	7, 509
HindII	GTYRAC	2 cut(s)	7, 509
HindIII	AAGCTT	3 cut(s)	92, 281, 555
HinfI	GANTC	5 cut(s)	15, 159, 202, 247, 458
HpaI	GTTAAC	1 cut(s)	7
HpaII	CCGG	1 cut(s)	543
HphI	GGTGA	4 cut(s)	236, 365, 460, 578
Hpy166II	GTNNAC	4 cut(s)	7, 430, 475, 509
Hpy188I	TCNGA	2 cut(s)	14, 395
Hpy188III	TCNNGA	4 cut(s)	43, 77, 191, 263
Hpy8I	GTNNAC	4 cut(s)	7, 430, 475, 509
Hpy99I	CGWCG	3 cut(s)	57, 213, 330
HpyAV	CCTTC	2 cut(s)	215, 522
HpyCH4III	ACNGT	2 cut(s)	110, 307
HpyCH4IV	ACGT	4 cut(s)	9, 52, 325, 471
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	5 cut(s)	84, 152, 236, 363, 549
HpySE526I	ACGT	4 cut(s)	9, 52, 325, 471
KspAI	GTTAAC	1 cut(s)	7
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	545
LpnPI	CCDG	8 cut(s)	287, 339, 394, 498, 502, 525, 546, 556
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	70
MaeII	ACGT	4 cut(s)	9, 52, 325, 471
MaeIII	GTNAC	1 cut(s)	459
MboII	GAAGA	6 cut(s)	104, 211, 224, 251, 528, 535
MluCI	AATT	1 cut(s)	313
MlyI	GAGTC	1 cut(s)	467
MmeI	TCCRAC	2 cut(s)	79, 418
MnlI	CCTC	3 cut(s)	216, 411, 571
MroXI	GAANNNNTTC	2 cut(s)	38, 231
MseI	TTAA	3 cut(s)	6, 185, 348
MslI	CAYNNNNRTG	1 cut(s)	381
MspI	CCGG	1 cut(s)	543
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	554
NmuCI	GTSAC	1 cut(s)	459
OliI	CACNNNNGTG	1 cut(s)	381
PciSI	GCTCTTC	1 cut(s)	237
PdmI	GAANNNNTTC	2 cut(s)	38, 231
PfeI	GAWTC	4 cut(s)	15, 159, 202, 247
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
Ppu21I	YACGTR	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
RseI	CAYNNNNRTG	1 cut(s)	381
SalI	GTCGAC	1 cut(s)	507
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	3 cut(s)	6, 185, 348
SatI	GCNGC	1 cut(s)	171
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	513
SfaNI	GCATC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	1 cut(s)	313
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	2 cut(s)	110, 307
TaiI	ACGT	4 cut(s)	12, 55, 328, 474
TaqI	TCGA	2 cut(s)	250, 508
TasI	AATT	1 cut(s)	313
TfiI	GAWTC	4 cut(s)	15, 159, 202, 247
Tru1I	TTAA	3 cut(s)	6, 185, 348
Tru9I	TTAA	3 cut(s)	6, 185, 348
TseFI	GTSAC	1 cut(s)	459
TseI	GCWGC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	459
TspDTI	ATGAA	2 cut(s)	260, 282
TspGWI	ACGGA	1 cut(s)	152
Van91I	CCANNNNNTGG	1 cut(s)	500
XapI	RAATTY	1 cut(s)	313
XmiI	GTMKAC	2 cut(s)	474, 508
XmnI	GAANNNNTTC	2 cut(s)	38, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.