Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

4934810 .. 4936429

Gene Structure 1620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGTGCACGTTTGCTACTACCGCAACTATGGAAAGACCTTCAAGGGACCACGTCGTCCTTACGAGAAGGAGCGTCTTGATTCTGAATTGAAGCTGGTTGGTGAGTATGGTCTGCGTAACAAGCGTGAGCTCTGGAGAGTGCAGTACTCTCTTAGCCGTATCCGTAATGCTGCTAGAGATCTTTTGACTCTTGATGAGAAGAGTCCAAGAAGGATCTTTGAAGGTGAGGCTTTGCTCCGTAGGATGAACCGTTACGGGCTTCTTGATGAGAGCCAGAACAAGCTCGATTACGTCTTGGCTTTGACTGTTGAGAACTTTCTTGAGCGTCGTCTTCAGACTATTGTGTTCAAGTCTGGTATGGCTAAGTCTATCCATCACTCTCGTGTCCTCATCAGGCAGAGGCATATCAGGGTTGGAAAGCAATTGGTGAACATTCCATCATTCATGGTGAGACTTGATTCACAGAAGCACATTGACTTTGCCCTCACCAGTCCCTTCGGTGGTGGCCGTCCAGGAAGAGTGAAGAGAAGGAACGAGAAGTCTGCCTCCAAGAAAGCCTCAGGTGGCGGTGATGCAGACGGTGATGACGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071944 GO:0080090 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

198

Amino Acids

23.04

Weight (kDa)

10.17

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	8 - 108	1.3e-14	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	109 - 152	3.4e-12	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	54
AciI	CCGC	2 cut(s)	22, 567
AclWI	GGATC	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	4 cut(s)	43, 91, 221, 349
AjiI	CACGTC	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	511
AleI	CACNNNNGTG	1 cut(s)	381
AluBI	AGCT	3 cut(s)	94, 130, 283
AluI	AGCT	3 cut(s)	94, 130, 283
Alw21I	GWGCWC	2 cut(s)	9, 132
Alw26I	GTCTC	1 cut(s)	445
Alw44I	GTGCAC	1 cut(s)	5
AlwI	GGATC	1 cut(s)	221
AoxI	GGCC	1 cut(s)	505
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	7 cut(s)	113, 236, 439, 460, 478, 581, 593
AvaII	GGWCC	1 cut(s)	47
AxyI	CCTNAGG	1 cut(s)	559
BaeGI	GKGCMC	1 cut(s)	9
BanII	GRGCYC	1 cut(s)	132
BauI	CACGAG	1 cut(s)	381
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	2 cut(s)	9, 132
BbvI	GCAGC	1 cut(s)	157
BccI	CCATC	2 cut(s)	381, 445
BceAI	ACGGC	2 cut(s)	141, 492
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	1 cut(s)	174
BfuI	GTATCC	1 cut(s)	170
BglII	AGATCT	1 cut(s)	178
BisI	GCNGC	1 cut(s)	171
BlsI	GCNGC	1 cut(s)	172
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	1 cut(s)	47
BmgBI	CACGTC	1 cut(s)	53
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	562
BpiI	GAAGAC	1 cut(s)	323
BpmI	CTGGAG	1 cut(s)	154
BpuEI	CTTGAG	1 cut(s)	341
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
Bse1I	ACTGG	1 cut(s)	489
Bse21I	CCTNAGG	1 cut(s)	559
BseBI	CCWGG	1 cut(s)	513
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	573
BseNI	ACTGG	1 cut(s)	489
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	161
BshFI	GGCC	1 cut(s)	507
BsiHKAI	GWGCWC	2 cut(s)	9, 132
BslFI	GGGAC	2 cut(s)	60, 477
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	2 cut(s)	60, 477
BsnI	GGCC	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	9, 132
Bsp143I	GATC	2 cut(s)	178, 213
BspACI	CCGC	2 cut(s)	22, 567
BspANI	GGCC	1 cut(s)	507
BspCNI	CTCAG	1 cut(s)	572
BspLI	GGNNCC	1 cut(s)	48
BspPI	GGATC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	489
BssMI	GATC	2 cut(s)	178, 213
BssSI	CACGAG	1 cut(s)	381
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	3 cut(s)	251, 307, 581
Bst6I	CTCTTC	4 cut(s)	194, 511, 518, 585
BstDEI	CTNAG	3 cut(s)	152, 363, 559
BstF5I	GGATG	1 cut(s)	249
BstKTI	GATC	2 cut(s)	181, 216
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	2 cut(s)	178, 213
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 121
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstSLI	GKGCMC	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	2 cut(s)	178, 213
BstYI	RGATCY	2 cut(s)	178, 213
Bsu36I	CCTNAGG	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	507
BtrI	CACGTC	1 cut(s)	53
BtsCI	GGATG	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	47
CseI	GACGC	2 cut(s)	62, 314
Csp6I	GTAC	1 cut(s)	145
CviAII	CATG	1 cut(s)	445
CviQI	GTAC	1 cut(s)	145
DdeI	CTNAG	3 cut(s)	152, 363, 559
DpnI	GATC	2 cut(s)	180, 215
DpnII	GATC	2 cut(s)	178, 213
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	505
Eam1104I	CTCTTC	4 cut(s)	194, 511, 518, 585
EarI	CTCTTC	4 cut(s)	194, 511, 518, 585
Ecl136II	GAGCTC	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	317
Eco81I	CCTNAGG	1 cut(s)	559
EcoICRI	GAGCTC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	511
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	1 cut(s)	448
FaiI	YATR	5 cut(s)	30, 108, 359, 405, 446
FaqI	GGGAC	2 cut(s)	60, 477
FatI	CATG	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	256
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	154
HaeIII	GGCC	1 cut(s)	507
HgaI	GACGC	2 cut(s)	62, 314
Hin1II	CATG	1 cut(s)	448
HinfI	GANTC	4 cut(s)	80, 187, 202, 458
HphI	GGTGA	7 cut(s)	113, 236, 439, 460, 478, 581, 593
Hpy166II	GTNNAC	2 cut(s)	7, 430
Hpy188I	TCNGA	2 cut(s)	85, 336
Hpy188III	TCNNGA	5 cut(s)	77, 133, 191, 263, 320
Hpy8I	GTNNAC	2 cut(s)	7, 430
Hpy99I	CGWCG	2 cut(s)	57, 330
HpyAV	CCTTC	6 cut(s)	49, 61, 204, 215, 505, 522
HpyCH4III	ACNGT	3 cut(s)	251, 307, 581
HpyCH4IV	ACGT	3 cut(s)	9, 52, 291
HpyCH4V	TGCA	3 cut(s)	7, 142, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 121
HpyF3I	CTNAG	3 cut(s)	152, 363, 559
HpySE526I	ACGT	3 cut(s)	9, 52, 291
Hsp92II	CATG	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	178, 213
LmnI	GCTCC	2 cut(s)	70, 240
Lsp1109I	GCAGC	1 cut(s)	157
LweI	GCATC	1 cut(s)	562
MaeI	CTAG	1 cut(s)	174
MaeII	ACGT	3 cut(s)	9, 52, 291
MaeIII	GTNAC	2 cut(s)	116, 251
MalI	GATC	2 cut(s)	180, 215
MboI	GATC	2 cut(s)	178, 213
MboII	GAAGA	4 cut(s)	211, 323, 528, 535
MfeI	CAATTG	1 cut(s)	422
MflI	RGATCY	2 cut(s)	178, 213
MhlI	GDGCHC	2 cut(s)	9, 132
MluCI	AATT	2 cut(s)	86, 422
MlyI	GAGTC	2 cut(s)	181, 211
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	6 cut(s)	220, 393, 398, 494, 556, 568
MslI	CAYNNNNRTG	1 cut(s)	381
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	1 cut(s)	422
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	2 cut(s)	21, 121
NdeII	GATC	2 cut(s)	178, 213
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	1 cut(s)	48
OliI	CACNNNNGTG	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PfeI	GAWTC	2 cut(s)	80, 458
PflFI	GACNNNGTC	1 cut(s)	51
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	1 cut(s)	172
PleI	GAGTC	2 cut(s)	181, 210
PpsI	GAGTC	2 cut(s)	181, 210
Psp124BI	GAGCTC	1 cut(s)	132
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	1 cut(s)	48
PspPI	GGNCC	1 cut(s)	47
PsuI	RGATCY	2 cut(s)	178, 213
PsyI	GACNNNGTC	1 cut(s)	51
RsaI	GTAC	1 cut(s)	146
RsaNI	GTAC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	381
SacI	GAGCTC	1 cut(s)	132
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	2 cut(s)	178, 213
Sau96I	GGNCC	1 cut(s)	47
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	2 cut(s)	181, 211
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	9, 132
SetI	ASST	9 cut(s)	12, 41, 55, 96, 132, 226, 285, 294, 565
SfaNI	GCATC	1 cut(s)	562
SinI	GGWCC	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	86, 422
SsiI	CCGC	2 cut(s)	22, 567
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	251, 307, 581
TaiI	ACGT	3 cut(s)	12, 55, 294
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	86, 422
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	80, 458
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	260, 433
TspGWI	ACGGA	2 cut(s)	152, 227
Tth111I	GACNNNGTC	1 cut(s)	51
VneI	GTGCAC	1 cut(s)	5
VpaK11BI	GGWCC	1 cut(s)	47
XspI	CTAG	1 cut(s)	174
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.