Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

3061746 .. 3063872

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g04480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGCTTACGCTCGAAATGGGGAAAAGTCCAATTCAAAGCGAAACAAAGTGTCGTCCTCTTCTCTCAGAACTCGGCAGCGCGAGCCTCCCCCTCTCTCTCAATCTCACTCTCCTTTCTGGATCTGACCTAGGGCTAGCCAGCCATGGTGCACGTCGTCCATTACCGCAACTGGCAGATGGGAAGACCTTCAAGAAGCCACGTCGTCCTTATGAGAAGGAACGTTTAGATGCTGAGCTGAAGCTTGTTGGAGAATATGGACTCCGCGCAAAGAGGGAACTGTGGAGGGTTCAGTATTCTCTGAGCCGTATCCGTAATGCTGCCAGAGAACTTCTTACCCTGGATGAGAAAAATCCTCGCCGTATCTTTGAGGGTGAGGCTCTTCTTCGCAGGATGAACAGGTATGGGCTTCTGGATGAGAGCCAGAACAAGCTCGATTATGTGTTGGCTTTGACAGTGGAGAACTTTTTGGAGCGTCGTCTTCAAACCCTTGTGTTCAAAACTGGTATGGCCAAGTCCATTCACCATGCCAGAGTTCTCATCAGGCAAAGGCACATCAGGGTCGGAAGGCAGGTGGTCAACATCCCATCTTTCATGGTGAGGGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACCAGTCCCCTCGGAGGTGGGCGCCCTGGAAGGGTGAAGAGAAGGAACCAGAAGGCCGCTGCCAAGAAGGCTGCTGGTGGTGATGGCGACGAAGAGGAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

247

Amino Acids

27.89

Weight (kDa)

10.21

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	60 - 157	8e-14	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	158 - 202	1.1e-12	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
Acc36I	ACCTGC	1 cut(s)	559
AccB1I	GGYRCC	1 cut(s)	654
AccII	CGCG	2 cut(s)	80, 264
AciI	CCGC	3 cut(s)	164, 262, 690
AclI	AACGTT	1 cut(s)	220
AclWI	GGATC	1 cut(s)	127
AcoI	YGGCCR	1 cut(s)	507
AcuI	CTGAAG	1 cut(s)	257
AcyI	GRCGYC	1 cut(s)	655
AfiI	CCNNNNNNNGG	2 cut(s)	647, 664
AgsI	TTSAA	4 cut(s)	35, 190, 482, 496
AjiI	CACGTC	2 cut(s)	152, 200
AjnI	CCWGG	2 cut(s)	336, 658
AluBI	AGCT	3 cut(s)	235, 241, 430
AluI	AGCT	3 cut(s)	235, 241, 430
Alw21I	GWGCWC	1 cut(s)	151
Alw44I	GTGCAC	1 cut(s)	147
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	2 cut(s)	507, 687
ApaLI	GTGCAC	1 cut(s)	147
ApeKI	GCWGC	4 cut(s)	75, 317, 692, 704
Asp700I	GAANNNNTTC	1 cut(s)	185
AspA2I	CCTAGG	1 cut(s)	127
AspLEI	GCGC	3 cut(s)	80, 266, 657
AsuHPI	GGTGA	6 cut(s)	383, 512, 607, 625, 679, 725
AsuNHI	GCTAGC	1 cut(s)	133
AvrII	CCTAGG	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	151
BalI	TGGCCA	1 cut(s)	509
BanI	GGYRCC	1 cut(s)	654
BbsI	GAAGAC	2 cut(s)	188, 470
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	4 cut(s)	87, 304, 679, 691
BccI	CCATC	3 cut(s)	170, 592, 710
BceAI	ACGGC	2 cut(s)	288, 342
BciT130I	CCWGG	2 cut(s)	338, 660
BciVI	GTATCC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	128, 134
BfoI	RGCGCY	1 cut(s)	658
BfuAI	ACCTGC	1 cut(s)	559
BfuI	GTATCC	1 cut(s)	317
BglI	GCCNNNNNGGC	1 cut(s)	701
BisI	GCNGC	5 cut(s)	76, 318, 690, 693, 705
BlnI	CCTAGG	1 cut(s)	127
BlpI	GCTNAGC	1 cut(s)	231
BlsI	GCNGC	5 cut(s)	77, 319, 691, 694, 706
Bme1390I	CCNGG	2 cut(s)	338, 660
BmgBI	CACGTC	2 cut(s)	152, 200
BmiI	GGNNCC	2 cut(s)	656, 680
BmrFI	CCNGG	2 cut(s)	338, 660
BmsI	GCATC	1 cut(s)	217
BmtI	GCTAGC	1 cut(s)	137
BpiI	GAAGAC	2 cut(s)	188, 470
Bpu1102I	GCTNAGC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	655
BsaJI	CCNNGG	5 cut(s)	127, 142, 336, 643, 658
Bsc4I	CCNNNNNNNGG	2 cut(s)	647, 664
Bse1I	ACTGG	3 cut(s)	174, 505, 636
BseBI	CCWGG	2 cut(s)	338, 660
BseDI	CCNNGG	5 cut(s)	127, 142, 336, 643, 658
BseGI	GGATG	4 cut(s)	346, 396, 418, 579
BseLI	CCNNNNNNNGG	2 cut(s)	647, 664
BseMII	CTCAG	3 cut(s)	78, 222, 290
BseNI	ACTGG	3 cut(s)	174, 505, 636
BseSI	GKGCMC	1 cut(s)	151
BseXI	GCAGC	4 cut(s)	87, 304, 679, 691
Bsh1236I	CGCG	2 cut(s)	80, 264
BshFI	GGCC	2 cut(s)	509, 689
BshNI	GGYRCC	1 cut(s)	654
BsiHKAI	GWGCWC	1 cut(s)	151
BslFI	GGGAC	1 cut(s)	624
BslI	CCNNNNNNNGG	2 cut(s)	647, 664
BsmFI	GGGAC	1 cut(s)	624
BsnI	GGCC	2 cut(s)	509, 689
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	1 cut(s)	119
Bsp1720I	GCTNAGC	1 cut(s)	231
Bsp19I	CCATGG	1 cut(s)	142
BspACI	CCGC	3 cut(s)	164, 262, 690
BspANI	GGCC	2 cut(s)	509, 689
BspCNI	CTCAG	3 cut(s)	77, 223, 291
BspFNI	CGCG	2 cut(s)	80, 264
BspLI	GGNNCC	2 cut(s)	656, 680
BspMI	ACCTGC	1 cut(s)	559
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	654
BsrI	ACTGG	3 cut(s)	174, 505, 636
BssECI	CCNNGG	5 cut(s)	127, 142, 336, 643, 658
BssMI	GATC	1 cut(s)	119
BssNI	GRCGYC	1 cut(s)	655
BssT1I	CCWWGG	2 cut(s)	127, 142
Bst2UI	CCWGG	2 cut(s)	338, 660
Bst4CI	ACNGT	2 cut(s)	279, 454
Bst6I	CTCTTC	4 cut(s)	63, 384, 665, 720
BstACI	GRCGYC	1 cut(s)	655
BstC8I	GCNNGC	3 cut(s)	82, 135, 139
BstDEI	CTNAG	3 cut(s)	64, 231, 299
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	4 cut(s)	346, 396, 418, 579
BstFNI	CGCG	2 cut(s)	80, 264
BstH2I	RGCGCY	1 cut(s)	658
BstHHI	GCGC	3 cut(s)	80, 266, 657
BstKTI	GATC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	119
BstMWI	GCNNNNNNNGC	2 cut(s)	81, 701
BstNI	CCWGG	2 cut(s)	338, 660
BstSCI	CCNGG	2 cut(s)	336, 658
BstSLI	GKGCMC	1 cut(s)	151
BstUI	CGCG	2 cut(s)	80, 264
BstV1I	GCAGC	4 cut(s)	87, 304, 679, 691
BstV2I	GAAGAC	2 cut(s)	188, 470
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	509, 689
BtgI	CCRYGG	1 cut(s)	142
BtrI	CACGTC	2 cut(s)	152, 200
BtsCI	GGATG	4 cut(s)	346, 396, 418, 579
BtsIMutI	CAGTG	1 cut(s)	459
BveI	ACCTGC	1 cut(s)	559
Cac8I	GCNNGC	3 cut(s)	82, 135, 139
CfoI	GCGC	3 cut(s)	80, 266, 657
CseI	GACGC	1 cut(s)	461
CviAII	CATG	3 cut(s)	143, 524, 592
DdeI	CTNAG	3 cut(s)	64, 231, 299
DinI	GGCGCC	1 cut(s)	656
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	4 cut(s)	63, 384, 665, 720
EarI	CTCTTC	4 cut(s)	63, 384, 665, 720
Eco130I	CCWWGG	2 cut(s)	127, 142
Eco57I	CTGAAG	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	336, 658
EcoT14I	CCWWGG	2 cut(s)	127, 142
EgeI	GGCGCC	1 cut(s)	656
EheI	GGCGCC	1 cut(s)	656
ErhI	CCWWGG	2 cut(s)	127, 142
FaeI	CATG	3 cut(s)	146, 527, 595
FaiI	YATR	8 cut(s)	144, 210, 255, 402, 438, 506, 525, 593
FaqI	GGGAC	1 cut(s)	624
FatI	CATG	3 cut(s)	142, 523, 591
Fnu4HI	GCNGC	5 cut(s)	76, 318, 690, 693, 705
FokI	GGATG	4 cut(s)	353, 403, 425, 566
Fsp4HI	GCNGC	5 cut(s)	76, 318, 690, 693, 705
FspBI	CTAG	2 cut(s)	128, 134
GlaI	GCGC	3 cut(s)	79, 265, 656
GluI	GCNGC	5 cut(s)	76, 318, 690, 693, 705
HaeII	RGCGCY	1 cut(s)	658
HaeIII	GGCC	2 cut(s)	509, 689
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	3 cut(s)	80, 266, 657
Hin1I	GRCGYC	1 cut(s)	655
Hin1II	CATG	3 cut(s)	146, 527, 595
Hin6I	GCGC	3 cut(s)	78, 264, 655
HinP1I	GCGC	3 cut(s)	78, 264, 655
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	1 cut(s)	239
HinfI	GANTC	2 cut(s)	258, 605
HphI	GGTGA	6 cut(s)	383, 512, 607, 625, 679, 725
Hpy166II	GTNNAC	3 cut(s)	149, 577, 604
Hpy188I	TCNGA	5 cut(s)	67, 124, 300, 563, 647
Hpy188III	TCNNGA	3 cut(s)	117, 190, 410
Hpy8I	GTNNAC	3 cut(s)	149, 577, 604
Hpy99I	CGWCG	4 cut(s)	156, 204, 477, 725
HpyAV	CCTTC	7 cut(s)	196, 208, 558, 657, 669, 679, 694
HpyCH4III	ACNGT	2 cut(s)	279, 454
HpyCH4IV	ACGT	3 cut(s)	151, 199, 220
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	81, 701
HpyF3I	CTNAG	3 cut(s)	64, 231, 299
HpySE526I	ACGT	3 cut(s)	151, 199, 220
Hsp92I	GRCGYC	1 cut(s)	655
Hsp92II	CATG	3 cut(s)	146, 527, 595
HspAI	GCGC	3 cut(s)	78, 264, 655
KasI	GGCGCC	1 cut(s)	654
Kzo9I	GATC	1 cut(s)	119
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	469
Lsp1109I	GCAGC	4 cut(s)	87, 304, 679, 691
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	2 cut(s)	128, 134
MaeII	ACGT	3 cut(s)	151, 199, 220
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MboII	GAAGA	7 cut(s)	50, 193, 371, 374, 470, 682, 737
MflI	RGATCY	1 cut(s)	119
MhlI	GDGCHC	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	1 cut(s)	30
MluNI	TGGCCA	1 cut(s)	509
Mly113I	GGCGCC	1 cut(s)	655
MlyI	GAGTC	2 cut(s)	252, 599
MmeI	TCCRAC	2 cut(s)	226, 541
Mox20I	TGGCCA	1 cut(s)	509
MroXI	GAANNNNTTC	1 cut(s)	185
MscI	TGGCCA	1 cut(s)	509
Msp20I	TGGCCA	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	692
MspR9I	CCNGG	2 cut(s)	338, 660
MvaI	CCWGG	2 cut(s)	338, 660
MvnI	CGCG	2 cut(s)	80, 264
MwoI	GCNNNNNNNGC	2 cut(s)	81, 701
NarI	GGCGCC	1 cut(s)	655
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	1 cut(s)	119
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	3 cut(s)	146, 527, 595
NlaIV	GGNNCC	2 cut(s)	656, 680
NmeAIII	GCCGAG	1 cut(s)	51
PaqCI	CACCTGC	1 cut(s)	559
PciSI	GCTCTTC	1 cut(s)	384
PdmI	GAANNNNTTC	1 cut(s)	185
PkrI	GCNGC	5 cut(s)	77, 319, 691, 694, 706
PleI	GAGTC	2 cut(s)	252, 599
PluTI	GGCGCC	1 cut(s)	658
PpsI	GAGTC	2 cut(s)	252, 599
Psp1406I	AACGTT	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	336, 658
PspGI	CCWGG	2 cut(s)	336, 658
PspN4I	GGNNCC	2 cut(s)	656, 680
PsuI	RGATCY	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	384
SatI	GCNGC	5 cut(s)	76, 318, 690, 693, 705
Sau3AI	GATC	1 cut(s)	119
SchI	GAGTC	2 cut(s)	252, 599
ScrFI	CCNGG	2 cut(s)	338, 660
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	1 cut(s)	217
SfoI	GGCGCC	1 cut(s)	656
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	3 cut(s)	164, 262, 690
SspDI	GGCGCC	1 cut(s)	654
SspMI	CTAG	2 cut(s)	128, 134
StyD4I	CCNGG	2 cut(s)	336, 658
StyI	CCWWGG	2 cut(s)	127, 142
TaaI	ACNGT	2 cut(s)	279, 454
TaiI	ACGT	3 cut(s)	154, 202, 223
TaqI	TCGA	2 cut(s)	12, 432
TasI	AATT	1 cut(s)	30
TauI	GCSGC	1 cut(s)	692
TscAI	CASTG	1 cut(s)	459
TseI	GCWGC	4 cut(s)	75, 317, 692, 704
TspDTI	ATGAA	2 cut(s)	407, 580
TspGWI	ACGGA	1 cut(s)	299
TspRI	CASTG	1 cut(s)	459
VneI	GTGCAC	1 cut(s)	147
XmaJI	CCTAGG	1 cut(s)	127
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	2 cut(s)	128, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.