Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012935.1

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Forward (+)

17323 .. 18948

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012935.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

atggttcacgtcgtcttctaccgcaattatggaaagactttcaagaagccaagacgtccctatgagaaggaacgtttggatgctgagctgaagcttgtaggagaatatgggcttcggtgcaagagggagttgtggagggttcagtatgctttgagccgcatccgtaatgctgccagggaacttcttaccctggatgagaagaatcctcgccgtatctttgagggtgaggctcttctgcgcaggatgaacaggtttgggcttctggaagagagccagaacaagctcgattacgtccttgcactcactgttgagaacttccttgagaggcgtcttcagacccaagtgttcaaatctggtatggccaagtccatccatcacgccagggttctcatcaggcaaaggcacatcagggttggaaggcaggtggtgaacattccatcattcatggtgagaattgattccgagaagcacatcgacttcgccatcacaagtccccttggaggaggccgccccggaagagtgaagagaaggaaccagaaggccgctgccaagaaggcagctggtggtgatggagatgaggaagatgaggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

197

Amino Acids

23.03

Weight (kDa)

10.26

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	412
AatII	GACGTC	1 cut(s)	58
Acc16I	TGCGCA	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	412
AciI	CCGC	4 cut(s)	22, 157, 508, 543
AclI	AACGTT	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	360
AcuI	CTGAAG	2 cut(s)	110, 317
AcyI	GRCGYC	2 cut(s)	55, 328
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	2 cut(s)	43, 349
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	173, 189, 380
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	88, 94, 283, 560
AluI	AGCT	4 cut(s)	88, 94, 283, 560
AoxI	GGCC	3 cut(s)	360, 505, 540
ApeKI	GCWGC	3 cut(s)	170, 545, 557
Asp700I	GAANNNNTTC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	4 cut(s)	236, 439, 460, 578
BalI	TGGCCA	1 cut(s)	362
BbsI	GAAGAC	2 cut(s)	7, 323
BbvI	GCAGC	3 cut(s)	157, 532, 569
BccI	CCATC	5 cut(s)	377, 381, 445, 491, 563
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	3 cut(s)	175, 191, 382
BcnI	CCSGG	1 cut(s)	513
BfuAI	ACCTGC	1 cut(s)	412
BglI	GCCNNNNNGGC	1 cut(s)	554
BisI	GCNGC	6 cut(s)	157, 171, 508, 543, 546, 558
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	6 cut(s)	158, 172, 509, 544, 547, 559
Bme1390I	CCNGG	4 cut(s)	175, 191, 382, 513
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	533
BmrFI	CCNGG	4 cut(s)	175, 191, 382, 513
BmsI	GCATC	2 cut(s)	70, 168
BpiI	GAAGAC	2 cut(s)	7, 323
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	513
BsaHI	GRCGYC	2 cut(s)	55, 328
BsaJI	CCNNGG	5 cut(s)	174, 189, 381, 496, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
BseBI	CCWGG	3 cut(s)	175, 191, 382
BseDI	CCNNGG	5 cut(s)	174, 189, 381, 496, 511
BseGI	GGATG	5 cut(s)	85, 159, 199, 249, 369
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	516
BseXI	GCAGC	3 cut(s)	157, 532, 569
BshFI	GGCC	3 cut(s)	362, 507, 542
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	2 cut(s)	42, 477
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmFI	GGGAC	2 cut(s)	42, 477
BsnI	GGCC	3 cut(s)	362, 507, 542
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	4 cut(s)	22, 157, 508, 543
BspANI	GGCC	3 cut(s)	362, 507, 542
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	533
BspMI	ACCTGC	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	237
BssECI	CCNNGG	5 cut(s)	174, 189, 381, 496, 511
BssNI	GRCGYC	2 cut(s)	55, 328
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	3 cut(s)	175, 191, 382
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	4 cut(s)	237, 261, 511, 518
BstACI	GRCGYC	2 cut(s)	55, 328
BstDEI	CTNAG	1 cut(s)	84
BstF5I	GGATG	5 cut(s)	85, 159, 199, 249, 369
BstHHI	GCGC	1 cut(s)	240
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	3 cut(s)	175, 191, 382
BstSCI	CCNGG	4 cut(s)	173, 189, 380, 511
BstV1I	GCAGC	3 cut(s)	157, 532, 569
BstV2I	GAAGAC	2 cut(s)	7, 323
BsuRI	GGCC	3 cut(s)	362, 507, 542
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	5 cut(s)	85, 159, 199, 249, 369
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	412
CfoI	GCGC	1 cut(s)	240
CseI	GACGC	1 cut(s)	317
CviAII	CATG	1 cut(s)	445
DdeI	CTNAG	1 cut(s)	84
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	4 cut(s)	237, 261, 511, 518
EarI	CTCTTC	4 cut(s)	237, 261, 511, 518
Eco130I	CCWWGG	1 cut(s)	496
Eco57I	CTGAAG	2 cut(s)	110, 317
EcoRII	CCWGG	3 cut(s)	173, 189, 380
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	448
FaiI	YATR	6 cut(s)	30, 63, 108, 147, 359, 446
FaqI	GGGAC	2 cut(s)	42, 477
FatI	CATG	1 cut(s)	444
Fnu4HI	GCNGC	6 cut(s)	157, 171, 508, 543, 546, 558
FokI	GGATG	5 cut(s)	92, 146, 206, 256, 356
Fsp4HI	GCNGC	6 cut(s)	157, 171, 508, 543, 546, 558
FspI	TGCGCA	1 cut(s)	239
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	6 cut(s)	157, 171, 508, 543, 546, 558
HaeIII	GGCC	3 cut(s)	362, 507, 542
HapII	CCGG	1 cut(s)	513
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	240
Hin1I	GRCGYC	2 cut(s)	55, 328
Hin1II	CATG	1 cut(s)	448
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	202, 458
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	4 cut(s)	236, 439, 460, 578
Hpy166II	GTNNAC	2 cut(s)	7, 430
Hpy188I	TCNGA	2 cut(s)	336, 463
Hpy188III	TCNNGA	2 cut(s)	43, 263
Hpy8I	GTNNAC	2 cut(s)	7, 430
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	5 cut(s)	61, 411, 522, 532, 547
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	4 cut(s)	9, 55, 73, 291
HpyCH4V	TGCA	2 cut(s)	120, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	4 cut(s)	9, 55, 73, 291
Hsp92I	GRCGYC	2 cut(s)	55, 328
Hsp92II	CATG	1 cut(s)	448
HspAI	GCGC	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	237
Lsp1109I	GCAGC	3 cut(s)	157, 532, 569
LweI	GCATC	2 cut(s)	70, 168
MaeII	ACGT	4 cut(s)	9, 55, 73, 291
MboII	GAAGA	8 cut(s)	7, 211, 224, 278, 323, 528, 535, 593
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	2 cut(s)	25, 453
MluNI	TGGCCA	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	394
Mox20I	TGGCCA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	2 cut(s)	545, 560
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	4 cut(s)	175, 191, 382, 513
MvaI	CCWGG	3 cut(s)	175, 191, 382
MwoI	GCNNNNNNNGC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	513
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	1 cut(s)	533
NsbI	TGCGCA	1 cut(s)	239
PaqCI	CACCTGC	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	202, 458
PkrI	GCNGC	6 cut(s)	158, 172, 509, 544, 547, 559
Psp1406I	AACGTT	1 cut(s)	73
Psp6I	CCWGG	3 cut(s)	173, 189, 380
PspGI	CCWGG	3 cut(s)	173, 189, 380
PspN4I	GGNNCC	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	560
SapI	GCTCTTC	1 cut(s)	237
SatI	GCNGC	6 cut(s)	157, 171, 508, 543, 546, 558
ScrFI	CCNGG	4 cut(s)	175, 191, 382, 513
SfaNI	GCATC	2 cut(s)	70, 168
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	25, 453
SsiI	CCGC	4 cut(s)	22, 157, 508, 543
StyD4I	CCNGG	4 cut(s)	173, 189, 380, 511
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	4 cut(s)	12, 58, 76, 294
TaqI	TCGA	2 cut(s)	285, 474
TasI	AATT	2 cut(s)	25, 453
TauI	GCSGC	3 cut(s)	159, 510, 545
TfiI	GAWTC	2 cut(s)	202, 458
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	3 cut(s)	170, 545, 557
TspDTI	ATGAA	2 cut(s)	260, 433
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	457
ZraI	GACGTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.