Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006449.1

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

15048 .. 18830

Gene Structure 3783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006449.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgttgatgatgatcaggatcattatcttccagggtgttggaaaggaaggtattatcggcaccgactcgccggtaatcggattgctccagatcgttcaggtcgatccggcgtcaaccttgaaggagacgatgaaggcggcggtctccgggaactgctctattattagcagcttggcgttgcagtactcgaagaggaagagcaacagtgtaccaagtgatgcactggagcacgatgacctggaccataaggctgccgaactccgggatttggtagccgtacatggcgatcaacaaaggaatccctatgaccagaagaagccaagacgtccttatgagaaggaacatttggatgttgagctgaagcttgttggagaatatgggcttcggcgcaagagggacttgtggagggtccagtatgctttgagccgcatctataatgctgctagggaacttcttactctggacaagaaaatcctcgccgtatctttagacccagttgtggttatgttttattttgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

173

Amino Acids

19.59

Weight (kDa)

8.92

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	328
AccB1I	GGYRCC	1 cut(s)	59
AciI	CCGC	3 cut(s)	137, 140, 427
AclWI	GGATC	2 cut(s)	26, 98
AcuI	CTGAAG	1 cut(s)	380
AcyI	GRCGYC	2 cut(s)	110, 325
AfaI	GTAC	3 cut(s)	185, 210, 279
AfiI	CCNNNNNNNGG	4 cut(s)	77, 261, 268, 499
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	2 cut(s)	30, 237
AjuI	GAANNNNNNNTTGG	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	171, 358, 364
AluI	AGCT	3 cut(s)	171, 358, 364
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	2 cut(s)	119, 148
AlwI	GGATC	2 cut(s)	26, 98
ApeKI	GCWGC	3 cut(s)	168, 251, 440
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	2 cut(s)	241, 409
AsuC2I	CCSGG	2 cut(s)	148, 263
AvaII	GGWCC	2 cut(s)	241, 409
BanI	GGYRCC	1 cut(s)	59
Bbv12I	GWGCWC	1 cut(s)	231
BbvI	GCAGC	3 cut(s)	180, 238, 427
BceAI	ACGGC	2 cut(s)	260, 464
BciT130I	CCWGG	2 cut(s)	32, 239
BclI	TGATCA	1 cut(s)	12
BcnI	CCSGG	2 cut(s)	148, 263
BcoDI	GTCTC	2 cut(s)	119, 148
BfaI	CTAG	1 cut(s)	444
BisI	GCNGC	5 cut(s)	138, 169, 252, 427, 441
BlsI	GCNGC	5 cut(s)	139, 170, 253, 428, 442
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	4 cut(s)	32, 148, 239, 263
Bme18I	GGWCC	2 cut(s)	241, 409
BmgT120I	GGNCC	2 cut(s)	241, 409
BmiI	GGNNCC	2 cut(s)	61, 410
BmrFI	CCNGG	4 cut(s)	32, 148, 239, 263
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	2 cut(s)	208, 438
BmuI	ACTGGG	1 cut(s)	488
BpmI	CTGGAG	2 cut(s)	71, 245
BpuMI	CCSGG	2 cut(s)	148, 263
BsaBI	GATNNNNATC	3 cut(s)	11, 17, 23
BsaHI	GRCGYC	2 cut(s)	110, 325
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 261, 268, 499
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	3 cut(s)	228, 412, 494
Bse8I	GATNNNNATC	3 cut(s)	11, 17, 23
BseBI	CCWGG	2 cut(s)	32, 239
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	355
BseJI	GATNNNNATC	3 cut(s)	11, 17, 23
BseLI	CCNNNNNNNGG	4 cut(s)	77, 261, 268, 499
BseNI	ACTGG	3 cut(s)	228, 412, 494
BseXI	GCAGC	3 cut(s)	180, 238, 427
BshNI	GGYRCC	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	4 cut(s)	71, 107, 147, 262
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	4 cut(s)	77, 261, 268, 499
BsmAI	GTCTC	2 cut(s)	119, 148
BsmBI	CGTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	410
Bso31I	GGTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	5 cut(s)	12, 18, 90, 103, 286
BspACI	CCGC	3 cut(s)	137, 140, 427
BspLI	GGNNCC	2 cut(s)	61, 410
BspPI	GGATC	2 cut(s)	26, 98
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	148
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	3 cut(s)	228, 412, 494
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	5 cut(s)	12, 18, 90, 103, 286
BssNI	GRCGYC	2 cut(s)	110, 325
Bst2UI	CCWGG	2 cut(s)	32, 239
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	185, 191
BstACI	GRCGYC	2 cut(s)	110, 325
BstF5I	GGATG	1 cut(s)	355
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	5 cut(s)	15, 21, 93, 106, 289
BstMAI	GTCTC	2 cut(s)	119, 148
BstMBI	GATC	5 cut(s)	12, 18, 90, 103, 286
BstNI	CCWGG	2 cut(s)	32, 239
BstSCI	CCNGG	4 cut(s)	30, 146, 237, 261
BstV1I	GCAGC	3 cut(s)	180, 238, 427
BstXI	CCANNNNNNTGG	1 cut(s)	38
BtsCI	GGATG	1 cut(s)	355
BtsIMutI	CAGTG	2 cut(s)	211, 221
CfoI	GCGC	1 cut(s)	390
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	241, 409
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	184, 209, 278
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	8 cut(s)	171, 251, 275, 319, 358, 364, 382, 426
CviKI_1	RGCY	8 cut(s)	171, 251, 275, 319, 358, 364, 382, 426
CviQI	GTAC	3 cut(s)	184, 209, 278
DpnI	GATC	5 cut(s)	14, 20, 92, 105, 288
DpnII	GATC	5 cut(s)	12, 18, 90, 103, 286
Eam1104I	CTCTTC	2 cut(s)	185, 191
EarI	CTCTTC	2 cut(s)	185, 191
Eco31I	GGTCTC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	241, 409
Eco57I	CTGAAG	1 cut(s)	380
EcoRII	CCWGG	2 cut(s)	30, 237
Esp3I	CGTCTC	1 cut(s)	119
FaeI	CATG	1 cut(s)	284
FaiI	YATR	8 cut(s)	246, 282, 306, 333, 378, 417, 435, 506
FalI	AAGNNNNNCTT	4 cut(s)	313, 345, 383, 415
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	1 cut(s)	280
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	5 cut(s)	138, 169, 252, 427, 441
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	5 cut(s)	138, 169, 252, 427, 441
FspBI	CTAG	1 cut(s)	444
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	5 cut(s)	138, 169, 252, 427, 441
GsuI	CTGGAG	2 cut(s)	71, 245
HapII	CCGG	4 cut(s)	71, 107, 147, 262
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	390
Hin1I	GRCGYC	2 cut(s)	110, 325
Hin1II	CATG	1 cut(s)	284
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	114
HindII	GTYRAC	1 cut(s)	114
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	2 cut(s)	65, 298
HpaII	CCGG	4 cut(s)	71, 107, 147, 262
Hpy166II	GTNNAC	2 cut(s)	114, 209
Hpy188I	TCNGA	1 cut(s)	80
Hpy188III	TCNNGA	3 cut(s)	16, 88, 461
Hpy8I	GTNNAC	2 cut(s)	114, 209
HpyAV	CCTTC	4 cut(s)	41, 115, 127, 331
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	1 cut(s)	325
HpyCH4V	TGCA	2 cut(s)	181, 221
HpySE526I	ACGT	1 cut(s)	325
Hsp92I	GRCGYC	2 cut(s)	110, 325
Hsp92II	CATG	1 cut(s)	284
HspAI	GCGC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	5 cut(s)	12, 18, 90, 103, 286
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	2 cut(s)	90, 226
Lsp1109I	GCAGC	3 cut(s)	180, 238, 427
LweI	GCATC	2 cut(s)	208, 438
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	1 cut(s)	325
MalI	GATC	5 cut(s)	14, 20, 92, 105, 288
MboI	GATC	5 cut(s)	12, 18, 90, 103, 286
MboII	GAAGA	4 cut(s)	19, 202, 208, 325
MhlI	GDGCHC	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	59
MmeI	TCCRAC	2 cut(s)	19, 349
MnlI	CCTC	4 cut(s)	186, 387, 399, 485
MseI	TTAA	1 cut(s)	520
MslI	CAYNNNNRTG	1 cut(s)	348
MspI	CCGG	4 cut(s)	71, 107, 147, 262
MspR9I	CCNGG	4 cut(s)	32, 148, 239, 263
MvaI	CCWGG	2 cut(s)	32, 239
NciI	CCSGG	2 cut(s)	148, 263
NdeII	GATC	5 cut(s)	12, 18, 90, 103, 286
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	61, 410
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	298
PfoI	TCCNGGA	2 cut(s)	146, 261
PkrI	GCNGC	5 cut(s)	139, 170, 253, 428, 442
PleI	GAGTC	1 cut(s)	59
PpsI	GAGTC	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	30, 237
PspGI	CCWGG	2 cut(s)	30, 237
PspN4I	GGNNCC	2 cut(s)	61, 410
PspPI	GGNCC	2 cut(s)	241, 409
RsaI	GTAC	3 cut(s)	185, 210, 279
RsaNI	GTAC	3 cut(s)	184, 209, 278
RseI	CAYNNNNRTG	1 cut(s)	348
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	520
SatI	GCNGC	5 cut(s)	138, 169, 252, 427, 441
Sau3AI	GATC	5 cut(s)	12, 18, 90, 103, 286
Sau96I	GGNCC	2 cut(s)	241, 409
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	59
ScrFI	CCNGG	4 cut(s)	32, 148, 239, 263
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	8 cut(s)	52, 102, 119, 173, 240, 328, 360, 366
SfaNI	GCATC	2 cut(s)	208, 438
SinI	GGWCC	2 cut(s)	241, 409
SmiMI	CAYNNNNRTG	1 cut(s)	348
SsiI	CCGC	3 cut(s)	137, 140, 427
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	4 cut(s)	30, 146, 237, 261
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	102, 188
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	2 cut(s)	140, 429
TfiI	GAWTC	1 cut(s)	298
Tru1I	TTAA	1 cut(s)	520
Tru9I	TTAA	1 cut(s)	520
TscAI	CASTG	2 cut(s)	211, 228
TseI	GCWGC	3 cut(s)	168, 251, 440
TspDTI	ATGAA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	211, 228
VpaK11BI	GGWCC	2 cut(s)	241, 409
XspI	CTAG	1 cut(s)	444
ZraI	GACGTC	1 cut(s)	326
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.