Rw5G038790

Belongs to the universal ribosomal protein uS4 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
68551457 .. 68552848
1392 bp
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UTR
Exon/CDS
Intron
Rw5G038790.1

Sequence Viewer

Length: 246 bp
ATGAAGCATAGACATGGAAAGGCTTATAAGAAGCTAAGACGTCCTCATGAGAAGGAACATTTGGATGCTGAGCGGAAGCTTGTTGGAGAATATGGGCTTCTGTGCAAGAGGGAGTTGTGGAGGGTCCAATATGCTTTGAGCCTTATTTGTAATGCTGGTGAGGCTCATCTATGCAGGATGAATATGTATGGGCTCCTAGAAGAGAGCCAGAACAAGCTCGATTATGTCCTTGCACTCACTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

9.57

Weight (kDa)

9.27

Isoelectric Point (pI)

35.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AatII GACGTC 1 cut(s) 43
AccBSI CCGCTC 1 cut(s) 73
AciI CCGC 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 40
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AluBI AGCT 3 cut(s) 34, 79, 217
AluI AGCT 3 cut(s) 34, 79, 217
AspS9I GGNCC 1 cut(s) 124
AsuHPI GGTGA 1 cut(s) 170
AvaII GGWCC 1 cut(s) 124
BanII GRGCYC 1 cut(s) 195
BfaI CTAG 2 cut(s) 197, 244
BlpI GCTNAGC 1 cut(s) 69
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 125, 194
BmsI GCATC 1 cut(s) 55
Bpu1102I GCTNAGC 1 cut(s) 69
BsaHI GRCGYC 1 cut(s) 40
BseGI GGATG 2 cut(s) 70, 183
BseMII CTCAG 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 195
Bsp1720I GCTNAGC 1 cut(s) 69
BspACI CCGC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 61
BspHI TCATGA 1 cut(s) 46
BspLI GGNNCC 2 cut(s) 125, 194
BsrBI CCGCTC 1 cut(s) 73
BssNI GRCGYC 1 cut(s) 40
Bst4CI ACNGT 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 195
BstACI GRCGYC 1 cut(s) 40
BstDEI CTNAG 2 cut(s) 35, 69
BstF5I GGATG 2 cut(s) 70, 183
BstMWI GCNNNNNNNGC 1 cut(s) 161
BtsCI GGATG 2 cut(s) 70, 183
BtsIMutI CAGTG 1 cut(s) 237
CciI TCATGA 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 124
CviAII CATG 2 cut(s) 14, 47
CviJI RGCY 9 cut(s) 23, 34, 79, 97, 141, 164, 193, 207, 217
CviKI_1 RGCY 9 cut(s) 23, 34, 79, 97, 141, 164, 193, 207, 217
DdeI CTNAG 2 cut(s) 35, 69
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 1 cut(s) 124
EcoT38I GRGCYC 1 cut(s) 195
FaeI CATG 2 cut(s) 17, 50
FatI CATG 2 cut(s) 13, 46
FokI GGATG 2 cut(s) 77, 190
FriOI GRGCYC 1 cut(s) 195
FspBI CTAG 2 cut(s) 197, 244
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 2 cut(s) 17, 50
HindIII AAGCTT 1 cut(s) 77
HphI GGTGA 1 cut(s) 170
Hpy188III TCNNGA 1 cut(s) 47
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 241
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 3 cut(s) 105, 174, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 35, 69
HpySE526I ACGT 1 cut(s) 40
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 2 cut(s) 17, 50
LmnI GCTCC 1 cut(s) 198
LpnPI CCDG 3 cut(s) 141, 160, 221
LweI GCATC 1 cut(s) 55
MaeI CTAG 2 cut(s) 197, 244
MaeII ACGT 1 cut(s) 40
MbiI CCGCTC 1 cut(s) 73
MboII GAAGA 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 4 cut(s) 54, 102, 114, 154
MslI CAYNNNNRTG 2 cut(s) 12, 63
MwoI GCNNNNNNNGC 1 cut(s) 161
NlaIII CATG 2 cut(s) 17, 50
NlaIV GGNNCC 2 cut(s) 125, 194
PagI TCATGA 1 cut(s) 46
PsiI TTATAA 1 cut(s) 27
PspN4I GGNNCC 2 cut(s) 125, 194
PspPI GGNCC 1 cut(s) 124
RseI CAYNNNNRTG 2 cut(s) 12, 63
Sau96I GGNCC 1 cut(s) 124
SduI GDGCHC 1 cut(s) 195
SetI ASST 4 cut(s) 36, 43, 81, 219
SfaNI GCATC 1 cut(s) 55
SinI GGWCC 1 cut(s) 124
SmiMI CAYNNNNRTG 2 cut(s) 12, 63
SsiI CCGC 1 cut(s) 73
SspMI CTAG 2 cut(s) 197, 244
TaaI ACNGT 1 cut(s) 241
TaiI ACGT 1 cut(s) 43
TaqI TCGA 1 cut(s) 219
TscAI CASTG 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 17, 194
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 124
XspI CTAG 2 cut(s) 197, 244
ZraI GACGTC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.