Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

11410485 .. 11410722

Gene Structure 238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22962

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAGAAGGAACATTGAGCTGAAGCTTGTTGGAGAATATGGGCTTCGGCACAAGAGGGACTTGTGGAGGGTCCAGTATGCTTTGAGCCGCATCCGTAATGTTGCTAGGGAACTTCTTACTCTGGACAAGAAAAATCCTCGCCGTATCTTTAGACCCAGTTGTGGTTATGTTTTATTTTGTTTAATGTGCTTATGGGACGTTGTCCTAATTGGAAAAAGTGTTGTGGTTGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

78

Amino Acids

9.29

Weight (kDa)

10.43

Isoelectric Point (pI)

64.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	161
AluBI	AGCT	2 cut(s)	19, 25
AluI	AGCT	2 cut(s)	19, 25
AspS9I	GGNCC	1 cut(s)	70
AvaII	GGWCC	1 cut(s)	70
BceAI	ACGGC	1 cut(s)	126
BfaI	CTAG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	88
BlsI	GCNGC	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	71
BmrI	ACTGGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	99
BmuI	ACTGGG	1 cut(s)	150
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	2 cut(s)	73, 156
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseNI	ACTGG	2 cut(s)	73, 156
BslFI	GGGAC	2 cut(s)	71, 209
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	2 cut(s)	71, 209
BspACI	CCGC	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	71
BsrI	ACTGG	2 cut(s)	73, 156
BstF5I	GGATG	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	230
CviJI	RGCY	4 cut(s)	19, 25, 43, 87
CviKI_1	RGCY	4 cut(s)	19, 25, 43, 87
CviQI	GTAC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	70
Eco57I	CTGAAG	1 cut(s)	41
FaiI	YATR	4 cut(s)	39, 78, 168, 193
FalI	AAGNNNNNCTT	2 cut(s)	44, 76
FaqI	GGGAC	2 cut(s)	71, 209
Fnu4HI	GCNGC	1 cut(s)	88
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	88
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	1 cut(s)	88
HindIII	AAGCTT	1 cut(s)	23
Hpy188III	TCNNGA	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	198
HpySE526I	ACGT	1 cut(s)	198
LpnPI	CCDG	3 cut(s)	86, 107, 169
LweI	GCATC	1 cut(s)	99
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	198
MluCI	AATT	1 cut(s)	207
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	3 cut(s)	48, 60, 147
MseI	TTAA	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	71
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	89
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	1 cut(s)	88
Sau96I	GGNCC	1 cut(s)	70
SetI	ASST	3 cut(s)	21, 27, 201
SfaNI	GCATC	1 cut(s)	99
SgeI	CNNG	9 cut(s)	38, 64, 73, 85, 117, 134, 139, 150, 168
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	1 cut(s)	207
SsiI	CCGC	1 cut(s)	88
SspMI	CTAG	1 cut(s)	105
TaiI	ACGT	1 cut(s)	201
TasI	AATT	1 cut(s)	207
TatI	WGTACW	1 cut(s)	229
TauI	GCSGC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TspGWI	ACGGA	1 cut(s)	83
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	70
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.