Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000084.1

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Forward (+)

159707 .. 166418

Gene Structure 6712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000084.1_g000039.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

atgcaactcgtggatctggagataatgaaaatccaaatggtctcggaggagatcagccatcgctcgaggagcagagcacctcgtcactcctccgttatctcctcaatccttgacaagctcaagaatgtagagaagccaagacgtcctgatgagaaggaacatttggatgttgagctgaagcttgttggagaatatgggcttcggcgcaagagggacttgtggagggtccagtatgctttgagacgtatgtgtaatgctgctagggaacttcttactctggacaagaaaaatcctcaccgtatctttagacccagttgtgatgagacacctgcaatcattcaggatgttctctatgaggattattgcaactgttctactgtagctcggggttcaggttttatgctcggggttcaggttttatggttagatgagacacctgcaatcattcaggatgttctctatgaggattattgcaactgttctactgtagctcggggttcaggttttatgctcggggttcaggttttatggttagatgagacacctgcaatcattcaggatgttctctatgaggattattgcaactgttctactgtagctcggggttcaggttttatgctcggggttcaggttttatggttagatgagacacctgcaatcattcaggatgttctctatgaggattattgcaactgttctactgtagctcggggttcaggttttatgtccccctccctcccccccccgatgcaaaattctactattaatttaataaatgaaaccgggcgtgaggctgagcctcccagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

269

Amino Acids

30.55

Weight (kDa)

5.07

Isoelectric Point (pI)

47.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	4 cut(s)	337, 445, 553, 661
AatII	GACGTC	1 cut(s)	145
Acc36I	ACCTGC	4 cut(s)	337, 445, 553, 661
AclWI	GGATC	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	754
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	142
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	7 cut(s)	118, 175, 181, 383, 491, 599, 707
AluI	AGCT	7 cut(s)	118, 175, 181, 383, 491, 599, 707
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	6 cut(s)	46, 235, 317, 425, 533, 641
AlwI	GGATC	1 cut(s)	21
Ama87I	CYCGRG	8 cut(s)	64, 384, 404, 492, 512, 600, 620, 708
ApeKI	GCWGC	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	754
AseI	ATTAAT	1 cut(s)	765
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	226
AsuC2I	CCSGG	1 cut(s)	784
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	8 cut(s)	64, 384, 404, 492, 512, 600, 620, 708
AvaII	GGWCC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	784
BcoDI	GTCTC	6 cut(s)	46, 235, 317, 425, 533, 641
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	4 cut(s)	378, 486, 594, 702
BfuAI	ACCTGC	4 cut(s)	337, 445, 553, 661
BisI	GCNGC	1 cut(s)	258
BlpI	GCTNAGC	1 cut(s)	795
BlsI	GCNGC	1 cut(s)	259
Bme1390I	CCNGG	1 cut(s)	784
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	8 cut(s)	64, 384, 404, 492, 512, 600, 620, 708
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	784
BmrI	ACTGGG	2 cut(s)	306, 798
BmsI	GCATC	1 cut(s)	738
BmuI	ACTGGG	2 cut(s)	306, 798
BpmI	CTGGAG	1 cut(s)	38
Bpu1102I	GCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	784
BsaHI	GRCGYC	1 cut(s)	142
BsaI	GGTCTC	1 cut(s)	46
Bse1I	ACTGG	3 cut(s)	229, 312, 804
BseGI	GGATG	5 cut(s)	172, 349, 457, 565, 673
BseMII	CTCAG	1 cut(s)	786
BseNI	ACTGG	3 cut(s)	229, 312, 804
BseRI	GAGGAG	4 cut(s)	62, 79, 82, 91
BseXI	GCAGC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	8 cut(s)	64, 384, 404, 492, 512, 600, 620, 708
BsiSI	CCGG	1 cut(s)	783
BslFI	GGGAC	2 cut(s)	227, 712
BsmAI	GTCTC	6 cut(s)	46, 235, 317, 425, 533, 641
BsmBI	CGTCTC	1 cut(s)	235
BsmFI	GGGAC	2 cut(s)	227, 712
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	8 cut(s)	64, 384, 404, 492, 512, 600, 620, 708
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	13, 51
Bsp1720I	GCTNAGC	1 cut(s)	795
BspCNI	CTCAG	1 cut(s)	787
BspLI	GGNNCC	1 cut(s)	227
BspMI	ACCTGC	4 cut(s)	337, 445, 553, 661
BspPI	GGATC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	3 cut(s)	229, 312, 804
BssMI	GATC	2 cut(s)	13, 51
BssNI	GRCGYC	1 cut(s)	142
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst4CI	ACNGT	9 cut(s)	299, 371, 379, 479, 487, 587, 595, 695, 703
BstACI	GRCGYC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	795
BstF5I	GGATG	5 cut(s)	172, 349, 457, 565, 673
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	2 cut(s)	16, 54
BstMAI	GTCTC	6 cut(s)	46, 235, 317, 425, 533, 641
BstMBI	GATC	2 cut(s)	13, 51
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstSCI	CCNGG	1 cut(s)	782
BstSFI	CTRYAG	4 cut(s)	378, 486, 594, 702
BstV1I	GCAGC	1 cut(s)	244
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	5 cut(s)	172, 349, 457, 565, 673
BveI	ACCTGC	4 cut(s)	337, 445, 553, 661
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	795
DpnI	GATC	2 cut(s)	15, 53
DpnII	GATC	2 cut(s)	13, 51
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	197
Eco88I	CYCGRG	8 cut(s)	64, 384, 404, 492, 512, 600, 620, 708
Esp3I	CGTCTC	1 cut(s)	235
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	2 cut(s)	227, 712
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	5 cut(s)	179, 356, 464, 572, 680
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	1 cut(s)	261
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	38
HapII	CCGG	1 cut(s)	783
HhaI	GCGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	142
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	179
HpaII	CCGG	1 cut(s)	783
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	8 cut(s)	17, 121, 146, 278, 341, 449, 557, 665
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	9 cut(s)	299, 371, 379, 479, 487, 587, 595, 695, 703
HpyCH4IV	ACGT	2 cut(s)	142, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpyF3I	CTNAG	1 cut(s)	795
HpySE526I	ACGT	2 cut(s)	142, 244
Hsp92I	GRCGYC	1 cut(s)	142
HspAI	GCGC	1 cut(s)	205
Kzo9I	GATC	2 cut(s)	13, 51
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	738
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	2 cut(s)	142, 244
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	15, 53
MboI	GATC	2 cut(s)	13, 51
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	754, 766
MmeI	TCCRAC	1 cut(s)	166
MseI	TTAA	3 cut(s)	765, 770, 808
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	1 cut(s)	783
MspR9I	CCNGG	1 cut(s)	784
MwoI	GCNNNNNNNGC	1 cut(s)	69
NciI	CCSGG	1 cut(s)	784
NdeII	GATC	2 cut(s)	13, 51
NlaIV	GGNNCC	1 cut(s)	227
NmuCI	GTSAC	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	64
PaqCI	CACCTGC	4 cut(s)	337, 445, 553, 661
PkrI	GCNGC	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	765
PspN4I	GGNNCC	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	226
PspXI	VCTCGAGB	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	3 cut(s)	765, 770, 808
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	13, 51
Sau96I	GGNCC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	784
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	1 cut(s)	738
SfcI	CTRYAG	4 cut(s)	378, 486, 594, 702
Sfr274I	CTCGAG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	226
SlaI	CTCGAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	2 cut(s)	64, 119
SmoI	CTYRAG	2 cut(s)	64, 119
Sse9I	AATT	2 cut(s)	754, 766
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	782
TaaI	ACNGT	9 cut(s)	299, 371, 379, 479, 487, 587, 595, 695, 703
TaiI	ACGT	2 cut(s)	145, 247
TaqI	TCGA	1 cut(s)	65
TasI	AATT	2 cut(s)	754, 766
Tru1I	TTAA	3 cut(s)	765, 770, 808
Tru9I	TTAA	3 cut(s)	765, 770, 808
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	257
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	41, 792
TspGWI	ACGGA	1 cut(s)	82
VpaK11BI	GGWCC	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	765
XapI	RAATTY	1 cut(s)	754
XhoI	CTCGAG	1 cut(s)	64
XspI	CTAG	1 cut(s)	261
ZraI	GACGTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.