Rorug05G0212100

Belongs to the universal ribosomal protein uS4 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
21728677 .. 21728886
210 bp
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UTR
Exon/CDS
Intron
Rorug05G0212100.1

Sequence Viewer

Length: 210 bp
ATGCCTAACGGCCACACGGGCTCCACGTCACCCAAAAATTGTCTACGTGTATGGCTTGAAAATTCGCCACACGTGCGGGGGCGTGTTGAGAATATATATACATCCCACATGAGAAAAATGGGACCTTGCCTATGGGTTTATAAGGGTTTGGGCCACTCCATCCATTGTCAATTGATTTTGGATGTGAACCCCAGATTACTTTATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.95

Weight (kDa)

9.57

Isoelectric Point (pI)

44.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 141
AccI GTMKAC 1 cut(s) 43
AciI CCGC 1 cut(s) 76
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 1 cut(s) 61
AcvI CACGTG 1 cut(s) 73
AflIII ACRYGT 2 cut(s) 46, 70
AgsI TTSAA 1 cut(s) 59
AjiI CACGTC 1 cut(s) 27
AoxI GGCC 2 cut(s) 10, 151
ApoI RAATTY 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 122, 151
AsuHPI GGTGA 1 cut(s) 21
AvaII GGWCC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 23
BbrPI CACGTG 1 cut(s) 73
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 25
BfaI CTAG 1 cut(s) 208
BglI GCCNNNNNGGC 1 cut(s) 18
Bme18I GGWCC 1 cut(s) 122
BmgBI CACGTC 1 cut(s) 27
BmgT120I GGNCC 2 cut(s) 122, 151
BmiI GGNNCC 2 cut(s) 22, 123
BsaAI YACGTR 2 cut(s) 47, 73
BsaXI ACNNNNNCTCC 2 cut(s) 5, 35
BseGI GGATG 3 cut(s) 101, 159, 187
BshFI GGCC 2 cut(s) 12, 153
BslFI GGGAC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 2 cut(s) 12, 153
Bsp1286I GDGCHC 1 cut(s) 23
BspACI CCGC 1 cut(s) 76
BspANI GGCC 2 cut(s) 12, 153
BspLI GGNNCC 2 cut(s) 22, 123
BstBAI YACGTR 2 cut(s) 47, 73
BstF5I GGATG 3 cut(s) 101, 159, 187
BstMWI GCNNNNNNNGC 2 cut(s) 18, 73
BsuRI GGCC 2 cut(s) 12, 153
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 3 cut(s) 101, 159, 187
Cfr13I GGNCC 2 cut(s) 122, 151
CviAII CATG 1 cut(s) 109
CviJI RGCY 4 cut(s) 12, 21, 55, 153
CviKI_1 RGCY 4 cut(s) 12, 21, 55, 153
EaeI YGGCCR 1 cut(s) 10
Eco24I GRGCYC 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 122
Eco72I CACGTG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 122
EcoT38I GRGCYC 1 cut(s) 23
FaeI CATG 1 cut(s) 112
FaiI YATR 7 cut(s) 52, 95, 97, 99, 110, 133, 141
FaqI GGGAC 1 cut(s) 135
FatI CATG 1 cut(s) 108
FauI CCCGC 1 cut(s) 69
FblI GTMKAC 1 cut(s) 43
FokI GGATG 3 cut(s) 88, 146, 194
FriOI GRGCYC 1 cut(s) 23
FspBI CTAG 1 cut(s) 208
HaeIII GGCC 2 cut(s) 12, 153
Hin1II CATG 1 cut(s) 112
HphI GGTGA 1 cut(s) 21
Hpy166II GTNNAC 2 cut(s) 44, 187
Hpy8I GTNNAC 2 cut(s) 44, 187
HpyCH4IV ACGT 3 cut(s) 26, 46, 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 18, 73
HpySE526I ACGT 3 cut(s) 26, 46, 72
Hsp92II CATG 1 cut(s) 112
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 1 cut(s) 205
MaeI CTAG 1 cut(s) 208
MaeII ACGT 3 cut(s) 26, 46, 72
MaeIII GTNAC 1 cut(s) 27
MfeI CAATTG 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 23
MluCI AATT 3 cut(s) 37, 61, 170
MunI CAATTG 1 cut(s) 170
MwoI GCNNNNNNNGC 2 cut(s) 18, 73
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 2 cut(s) 22, 123
NmuCI GTSAC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 23
PmaCI CACGTG 1 cut(s) 73
PmlI CACGTG 1 cut(s) 73
Ppu21I YACGTR 2 cut(s) 47, 73
PpuMI RGGWCCY 1 cut(s) 122
PsiI TTATAA 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 122
PspCI CACGTG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 22, 123
PspPI GGNCC 2 cut(s) 122, 151
PspPPI RGGWCCY 1 cut(s) 122
Sau96I GGNCC 2 cut(s) 122, 151
SduI GDGCHC 1 cut(s) 23
SetI ASST 4 cut(s) 29, 49, 75, 127
SinI GGWCC 1 cut(s) 122
Sse9I AATT 3 cut(s) 37, 61, 170
SsiI CCGC 1 cut(s) 76
SspMI CTAG 1 cut(s) 208
TaiI ACGT 3 cut(s) 29, 49, 75
TasI AATT 3 cut(s) 37, 61, 170
TseFI GTSAC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 61
XmiI GTMKAC 1 cut(s) 43
XspI CTAG 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.