Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Forward (+)

57236823 .. 57238986

Gene Structure 2164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG386300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAGGCGGCGGTCTCCGGGAACTGCTCTATTATTAGCAGCTTGGCGTTGCGGTACTCGAAGAGGAAGAGCAACAGTGTACCAAGTGATGCACTGGAGCACGATGACCTGGACCATAAGGCTGCCGAACTCCGGGATTTGGTAGCCGTACATGGCGATCAACAAAGGAATCCCTATGACCAGATGATGAGACAATGTTCATGTTTAGAGAAGCCAAGACGTCCTTATGAGAAGGAACATTTGGATGTTGAGCTGAAGCTTGTTGGAGAATATGGGCTTCGGCGCAAGAGGGACTTGTGGAGGGTCCAGTATGCTTTGAGCCGCATCTGTAATGCTGCTAGGGAACTTCTTACTCTGGACAAGAAAATCCTCGCCGTATCTTTAGACCCAGTTGTGGTTATGTTTTATTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

138

Amino Acids

15.91

Weight (kDa)

8.91

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	223
AciI	CCGC	4 cut(s)	8, 11, 52, 322
AcuI	CTGAAG	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	220
AfaI	GTAC	3 cut(s)	56, 81, 150
AfiI	CCNNNNNNNGG	3 cut(s)	132, 139, 394
AjnI	CCWGG	1 cut(s)	108
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AluBI	AGCT	3 cut(s)	42, 253, 259
AluI	AGCT	3 cut(s)	42, 253, 259
Alw21I	GWGCWC	1 cut(s)	102
Alw26I	GTCTC	2 cut(s)	19, 184
ApeKI	GCWGC	3 cut(s)	39, 122, 335
AspLEI	GCGC	1 cut(s)	285
AspS9I	GGNCC	2 cut(s)	112, 304
AsuC2I	CCSGG	2 cut(s)	19, 134
AvaII	GGWCC	2 cut(s)	112, 304
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	3 cut(s)	51, 109, 322
BceAI	ACGGC	2 cut(s)	131, 359
BciT130I	CCWGG	1 cut(s)	110
BcnI	CCSGG	2 cut(s)	19, 134
BcoDI	GTCTC	2 cut(s)	19, 184
BfaI	CTAG	1 cut(s)	339
BisI	GCNGC	5 cut(s)	9, 40, 123, 322, 336
BlsI	GCNGC	5 cut(s)	10, 41, 124, 323, 337
Bme1390I	CCNGG	3 cut(s)	19, 110, 134
Bme18I	GGWCC	2 cut(s)	112, 304
BmgT120I	GGNCC	2 cut(s)	112, 304
BmiI	GGNNCC	1 cut(s)	305
BmrFI	CCNGG	3 cut(s)	19, 110, 134
BmrI	ACTGGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	79, 333
BmuI	ACTGGG	1 cut(s)	383
BpmI	CTGGAG	1 cut(s)	116
BpuMI	CCSGG	2 cut(s)	19, 134
BsaHI	GRCGYC	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 139, 394
Bse1I	ACTGG	3 cut(s)	99, 307, 389
BseBI	CCWGG	1 cut(s)	110
BseGI	GGATG	1 cut(s)	250
BseLI	CCNNNNNNNGG	3 cut(s)	132, 139, 394
BseNI	ACTGG	3 cut(s)	99, 307, 389
BseXI	GCAGC	3 cut(s)	51, 109, 322
BsiHKAI	GWGCWC	1 cut(s)	102
BsiSI	CCGG	2 cut(s)	18, 133
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	132, 139, 394
BsmAI	GTCTC	2 cut(s)	19, 184
BsmFI	GGGAC	1 cut(s)	305
Bso31I	GGTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	1 cut(s)	157
BspACI	CCGC	4 cut(s)	8, 11, 52, 322
BspLI	GGNNCC	1 cut(s)	305
BspQI	GCTCTTC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	19
BsrI	ACTGG	3 cut(s)	99, 307, 389
BssMI	GATC	1 cut(s)	157
BssNI	GRCGYC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	2 cut(s)	56, 62
BstACI	GRCGYC	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	1 cut(s)	160
BstMAI	GTCTC	2 cut(s)	19, 184
BstMBI	GATC	1 cut(s)	157
BstNI	CCWGG	1 cut(s)	110
BstSCI	CCNGG	3 cut(s)	17, 108, 132
BstV1I	GCAGC	3 cut(s)	51, 109, 322
BtsCI	GGATG	1 cut(s)	250
BtsIMutI	CAGTG	2 cut(s)	82, 92
CfoI	GCGC	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	112, 304
Csp6I	GTAC	3 cut(s)	55, 80, 149
CviAII	CATG	2 cut(s)	152, 201
CviJI	RGCY	8 cut(s)	42, 122, 146, 214, 253, 259, 277, 321
CviKI_1	RGCY	8 cut(s)	42, 122, 146, 214, 253, 259, 277, 321
CviQI	GTAC	3 cut(s)	55, 80, 149
DpnI	GATC	1 cut(s)	159
DpnII	GATC	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	56, 62
EarI	CTCTTC	2 cut(s)	56, 62
Eco31I	GGTCTC	1 cut(s)	19
Eco47I	GGWCC	2 cut(s)	112, 304
Eco57I	CTGAAG	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	108
FaeI	CATG	2 cut(s)	155, 204
FaiI	YATR	8 cut(s)	117, 153, 177, 202, 228, 273, 312, 401
FalI	AAGNNNNNCTT	4 cut(s)	208, 240, 278, 310
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	2 cut(s)	151, 200
Fnu4HI	GCNGC	5 cut(s)	9, 40, 123, 322, 336
FokI	GGATG	1 cut(s)	257
Fsp4HI	GCNGC	5 cut(s)	9, 40, 123, 322, 336
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	5 cut(s)	9, 40, 123, 322, 336
GsuI	CTGGAG	1 cut(s)	116
HapII	CCGG	2 cut(s)	18, 133
HhaI	GCGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	155, 204
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	257
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	18, 133
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	1 cut(s)	92
HpySE526I	ACGT	1 cut(s)	220
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	2 cut(s)	155, 204
HspAI	GCGC	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	97
LpnPI	CCDG	9 cut(s)	31, 80, 95, 122, 146, 194, 320, 341, 402
Lsp1109I	GCAGC	3 cut(s)	51, 109, 322
LweI	GCATC	2 cut(s)	79, 333
MaeI	CTAG	1 cut(s)	339
MaeII	ACGT	1 cut(s)	220
MalI	GATC	1 cut(s)	159
MboI	GATC	1 cut(s)	157
MboII	GAAGA	2 cut(s)	73, 79
MhlI	GDGCHC	1 cut(s)	102
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	4 cut(s)	57, 282, 294, 380
MseI	TTAA	1 cut(s)	415
MslI	CAYNNNNRTG	1 cut(s)	243
MspI	CCGG	2 cut(s)	18, 133
MspR9I	CCNGG	3 cut(s)	19, 110, 134
MvaI	CCWGG	1 cut(s)	110
NciI	CCSGG	2 cut(s)	19, 134
NdeII	GATC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	155, 204
NlaIV	GGNNCC	1 cut(s)	305
PciSI	GCTCTTC	1 cut(s)	62
PfeI	GAWTC	1 cut(s)	169
PfoI	TCCNGGA	2 cut(s)	17, 132
PkrI	GCNGC	5 cut(s)	10, 41, 124, 323, 337
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspN4I	GGNNCC	1 cut(s)	305
PspPI	GGNCC	2 cut(s)	112, 304
RsaI	GTAC	3 cut(s)	56, 81, 150
RsaNI	GTAC	3 cut(s)	55, 80, 149
RseI	CAYNNNNRTG	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	5 cut(s)	9, 40, 123, 322, 336
Sau3AI	GATC	1 cut(s)	157
Sau96I	GGNCC	2 cut(s)	112, 304
ScrFI	CCNGG	3 cut(s)	19, 110, 134
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	5 cut(s)	44, 111, 223, 255, 261
SfaNI	GCATC	2 cut(s)	79, 333
SinI	GGWCC	2 cut(s)	112, 304
SmiMI	CAYNNNNRTG	1 cut(s)	243
SsiI	CCGC	4 cut(s)	8, 11, 52, 322
SspMI	CTAG	1 cut(s)	339
StyD4I	CCNGG	3 cut(s)	17, 108, 132
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	59
TauI	GCSGC	2 cut(s)	11, 324
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TscAI	CASTG	2 cut(s)	82, 99
TseI	GCWGC	3 cut(s)	39, 122, 335
TspDTI	ATGAA	2 cut(s)	17, 189
TspRI	CASTG	2 cut(s)	82, 99
VpaK11BI	GGWCC	2 cut(s)	112, 304
XspI	CTAG	1 cut(s)	339
ZraI	GACGTC	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.