Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

3683236 .. 3685352

Gene Structure 2117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1049900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTGCACGTCGTCCATTACCGCAACTATGGGAAGACTTTCAAGAAGCCGCGTCGTCCTTATGAGAAGGAACGTTTGGATGCTGAGCTGAAGCTTGTTGGAGAATATGGACTCCGTGCAAAGAGGGAACTGTGGAGGGTTCAGTATTCTCTGAGCCGTATCCGTAATGCTGCCAGGGAACTTCTTACCCTGGATGAGAAAAATCCTCGCCGTATCTTTGAGGGTGAGGCTCTTCTTCGCAGGATGAACAGGTATGGCCTTCTGGATGAGAGCCAGAACAAGCTCGATTATGTGTTGGCTTTGACTGTGGAGAACTTTTTGGAGCGTCGTCTTCAAACCCTTGTGTTCAAAACTGGTATGGCCAAGTCCATTCACCACGCCAGAGTTCTCATCAGGCAAAGGCACATCAGGGTCGGAAGGCAGGTGGTCAACATCCCATCTTTCATGGTGAGGGTGGACTCCCAGAAGCACATTGACTTCTCTCTCACTAGTCCCCTCGGAGGTGGGCGCCCTGGAAGGGTGAAGAGAAGGAACCAGAAGGCCGCTGCCAAGAAGGCTGCTGGTGGTGATGGCGACGAAGAGGAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

198

Amino Acids

23.02

Weight (kDa)

10.37

Isoelectric Point (pI)

55.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	8 - 108	2.7e-14	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	109 - 153	7.8e-13	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	412
Acc36I	ACCTGC	1 cut(s)	412
AccB1I	GGYRCC	1 cut(s)	507
AccII	CGCG	1 cut(s)	52
AciI	CCGC	3 cut(s)	22, 50, 543
AclI	AACGTT	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	360
AcuI	CTGAAG	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	508
AfiI	CCNNNNNNNGG	2 cut(s)	500, 517
AgsI	TTSAA	3 cut(s)	43, 335, 349
AhlI	ACTAGT	1 cut(s)	488
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	173, 189, 511
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	3 cut(s)	88, 94, 283
AluI	AGCT	3 cut(s)	88, 94, 283
Alw21I	GWGCWC	1 cut(s)	9
Alw44I	GTGCAC	1 cut(s)	5
AoxI	GGCC	3 cut(s)	256, 360, 540
ApaLI	GTGCAC	1 cut(s)	5
ApeKI	GCWGC	3 cut(s)	170, 545, 557
Asp700I	GAANNNNTTC	1 cut(s)	38
AspLEI	GCGC	1 cut(s)	510
AsuHPI	GGTGA	5 cut(s)	236, 365, 460, 532, 578
BaeGI	GKGCMC	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	507
BbsI	GAAGAC	2 cut(s)	41, 323
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	3 cut(s)	157, 532, 544
BccI	CCATC	2 cut(s)	445, 563
BceAI	ACGGC	2 cut(s)	141, 195
BciT130I	CCWGG	3 cut(s)	175, 191, 513
BciVI	GTATCC	1 cut(s)	170
BcuI	ACTAGT	1 cut(s)	488
BfaI	CTAG	1 cut(s)	489
BfoI	RGCGCY	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	412
BfuI	GTATCC	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	554
BisI	GCNGC	5 cut(s)	50, 171, 543, 546, 558
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	5 cut(s)	51, 172, 544, 547, 559
Bme1390I	CCNGG	3 cut(s)	175, 191, 513
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	509, 533
BmrFI	CCNGG	3 cut(s)	175, 191, 513
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	2 cut(s)	41, 323
Bpu1102I	GCTNAGC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	508
BsaJI	CCNNGG	4 cut(s)	174, 189, 496, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 517
Bse1I	ACTGG	1 cut(s)	358
BseBI	CCWGG	3 cut(s)	175, 191, 513
BseDI	CCNNGG	4 cut(s)	174, 189, 496, 511
BseGI	GGATG	5 cut(s)	85, 199, 249, 271, 432
BseLI	CCNNNNNNNGG	2 cut(s)	500, 517
BseMII	CTCAG	2 cut(s)	75, 143
BseNI	ACTGG	1 cut(s)	358
BseSI	GKGCMC	1 cut(s)	9
BseXI	GCAGC	3 cut(s)	157, 532, 544
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	3 cut(s)	258, 362, 542
BshNI	GGYRCC	1 cut(s)	507
BsiHKAI	GWGCWC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	2 cut(s)	500, 517
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	3 cut(s)	258, 362, 542
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	3 cut(s)	22, 50, 543
BspANI	GGCC	3 cut(s)	258, 362, 542
BspCNI	CTCAG	2 cut(s)	76, 144
BspFNI	CGCG	1 cut(s)	52
BspLI	GGNNCC	2 cut(s)	509, 533
BspMI	ACCTGC	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	358
BssECI	CCNNGG	4 cut(s)	174, 189, 496, 511
BssNI	GRCGYC	1 cut(s)	508
Bst2UI	CCWGG	3 cut(s)	175, 191, 513
Bst4CI	ACNGT	2 cut(s)	132, 307
Bst6I	CTCTTC	3 cut(s)	237, 518, 573
BstACI	GRCGYC	1 cut(s)	508
BstDEI	CTNAG	2 cut(s)	84, 152
BstF5I	GGATG	5 cut(s)	85, 199, 249, 271, 432
BstFNI	CGCG	1 cut(s)	52
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	1 cut(s)	510
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	3 cut(s)	175, 191, 513
BstSCI	CCNGG	3 cut(s)	173, 189, 511
BstSLI	GKGCMC	1 cut(s)	9
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	3 cut(s)	157, 532, 544
BstV2I	GAAGAC	2 cut(s)	41, 323
BsuI	GTATCC	1 cut(s)	170
BsuRI	GGCC	3 cut(s)	258, 362, 542
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	5 cut(s)	85, 199, 249, 271, 432
BveI	ACCTGC	1 cut(s)	412
CfoI	GCGC	1 cut(s)	510
CseI	GACGC	2 cut(s)	41, 314
CviAII	CATG	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	84, 152
DinI	GGCGCC	1 cut(s)	509
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	3 cut(s)	237, 518, 573
EarI	CTCTTC	3 cut(s)	237, 518, 573
Eco57I	CTGAAG	1 cut(s)	110
EcoRII	CCWGG	3 cut(s)	173, 189, 511
EgeI	GGCGCC	1 cut(s)	509
EheI	GGCGCC	1 cut(s)	509
FaeI	CATG	1 cut(s)	448
FaiI	YATR	7 cut(s)	30, 63, 108, 255, 291, 359, 446
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	1 cut(s)	444
Fnu4HI	GCNGC	5 cut(s)	50, 171, 543, 546, 558
FokI	GGATG	5 cut(s)	92, 206, 256, 278, 419
Fsp4HI	GCNGC	5 cut(s)	50, 171, 543, 546, 558
FspBI	CTAG	1 cut(s)	489
GlaI	GCGC	1 cut(s)	509
GluI	GCNGC	5 cut(s)	50, 171, 543, 546, 558
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	3 cut(s)	258, 362, 542
HgaI	GACGC	2 cut(s)	41, 314
HhaI	GCGC	1 cut(s)	510
Hin1I	GRCGYC	1 cut(s)	508
Hin1II	CATG	1 cut(s)	448
Hin6I	GCGC	1 cut(s)	508
HinP1I	GCGC	1 cut(s)	508
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	111, 458
HphI	GGTGA	5 cut(s)	236, 365, 460, 532, 578
Hpy166II	GTNNAC	3 cut(s)	7, 430, 457
Hpy188I	TCNGA	3 cut(s)	153, 416, 500
Hpy188III	TCNNGA	2 cut(s)	43, 263
Hpy8I	GTNNAC	3 cut(s)	7, 430, 457
Hpy99I	CGWCG	4 cut(s)	14, 57, 330, 578
HpyAV	CCTTC	7 cut(s)	61, 269, 411, 510, 522, 532, 547
HpyCH4III	ACNGT	2 cut(s)	132, 307
HpyCH4IV	ACGT	2 cut(s)	9, 73
HpyCH4V	TGCA	2 cut(s)	7, 119
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	2 cut(s)	84, 152
HpySE526I	ACGT	2 cut(s)	9, 73
Hsp92I	GRCGYC	1 cut(s)	508
Hsp92II	CATG	1 cut(s)	448
HspAI	GCGC	1 cut(s)	508
KasI	GGCGCC	1 cut(s)	507
LguI	GCTCTTC	1 cut(s)	237
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	3 cut(s)	157, 532, 544
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	1 cut(s)	489
MaeII	ACGT	2 cut(s)	9, 73
MboII	GAAGA	6 cut(s)	46, 224, 227, 323, 535, 590
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	362
MluNI	TGGCCA	1 cut(s)	362
Mly113I	GGCGCC	1 cut(s)	508
MlyI	GAGTC	2 cut(s)	105, 452
MmeI	TCCRAC	2 cut(s)	79, 394
MnlI	CCTC	9 cut(s)	117, 129, 214, 216, 220, 444, 494, 506, 574
Mox20I	TGGCCA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	362
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	545
MspR9I	CCNGG	3 cut(s)	175, 191, 513
MvaI	CCWGG	3 cut(s)	175, 191, 513
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	554
NarI	GGCGCC	1 cut(s)	508
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	2 cut(s)	509, 533
PaqCI	CACCTGC	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	38
PkrI	GCNGC	5 cut(s)	51, 172, 544, 547, 559
PleI	GAGTC	2 cut(s)	105, 452
PluTI	GGCGCC	1 cut(s)	511
PpsI	GAGTC	2 cut(s)	105, 452
Psp1406I	AACGTT	1 cut(s)	73
Psp6I	CCWGG	3 cut(s)	173, 189, 511
PspGI	CCWGG	3 cut(s)	173, 189, 511
PspN4I	GGNNCC	2 cut(s)	509, 533
SapI	GCTCTTC	1 cut(s)	237
SatI	GCNGC	5 cut(s)	50, 171, 543, 546, 558
SchI	GAGTC	2 cut(s)	105, 452
ScrFI	CCNGG	3 cut(s)	175, 191, 513
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	8 cut(s)	12, 76, 90, 96, 254, 285, 426, 505
SfaNI	GCATC	1 cut(s)	70
SfoI	GGCGCC	1 cut(s)	509
SpeI	ACTAGT	1 cut(s)	488
SsiI	CCGC	3 cut(s)	22, 50, 543
SspDI	GGCGCC	1 cut(s)	507
SspMI	CTAG	1 cut(s)	489
StyD4I	CCNGG	3 cut(s)	173, 189, 511
TaaI	ACNGT	2 cut(s)	132, 307
TaiI	ACGT	2 cut(s)	12, 76
TaqI	TCGA	1 cut(s)	285
TauI	GCSGC	2 cut(s)	52, 545
TseI	GCWGC	3 cut(s)	170, 545, 557
TspDTI	ATGAA	2 cut(s)	260, 433
TspGWI	ACGGA	2 cut(s)	104, 152
VneI	GTGCAC	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	38
XspI	CTAG	1 cut(s)	489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.