Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002521.1

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Forward (+)

201989 .. 204813

Gene Structure 2825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002521.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

atggttaaatggtcgacggcgcgatgggaatggcggtgggatgaaggcggcggtcctgcgaaggtggctgtgctgccgggggatcctgatatccggcgaccccaaatccaacaggctcctctacaccaatggcagatccgtgatcatcatgaacctcgacaacccactcgacgtcgccgtctacgcagagcacgcctacccggccaccgtcgccagattctccccaacggcgagtggatcgcgtccgccgacgtctccggcaccgtcaggatctgggggacgcacaacgatttccttccgattgcgtttggtctctctacgacgatcccatcctccaagtctcccttcaaatctaacagtagccgatcaccgccgcgctctccaagttcttctccgacgtccacctcagaacctcgccatcgacgtcagagacttcgaggctccgaaacggcgcagtttcagagttgtgaaatgagcctaagggccttctcaggtcttaggtctcaggtcttaagttcactgttctactttcaaaatggtcgtccaccacctaatggacttaataaacaacgtctttccagaattgatgagcttttcagcagtcatatgaatggattgcaaatgcaagagaagccaagacgcccttatgagaaggaacatttggatgttgagctgaagcttgctggagaatatgggcttcggcacaagagggacttgtggagggtccagtatgctttgagccgcatccgtaatgcttctagggaacttcttactttggacaagaaaaatcctcgccgtatctttagacccagttgtggttatgttttattttgtttaatgtgcttatgggaggttgtcctaattgaaaaaagtgttgtggttgtactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

296

Amino Acids

34.38

Weight (kDa)

11.09

Isoelectric Point (pI)

79.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	177
AatII	GACGTC	4 cut(s)	175, 255, 401, 427
AccB1I	GGYRCC	1 cut(s)	260
AccB7I	CCANNNNNTGG	1 cut(s)	554
AccI	GTMKAC	2 cut(s)	14, 181
AccII	CGCG	3 cut(s)	22, 242, 376
AciI	CCGC	7 cut(s)	34, 48, 51, 246, 371, 374, 742
AclWI	GGATC	6 cut(s)	77, 90, 130, 245, 278, 319
AcoI	YGGCCR	1 cut(s)	202
AcuI	CTGAAG	1 cut(s)	695
AcyI	GRCGYC	5 cut(s)	172, 252, 398, 424, 640
AfaI	GTAC	1 cut(s)	885
AfiI	CCNNNNNNNGG	2 cut(s)	554, 815
AflII	CTTAAG	1 cut(s)	511
AgsI	TTSAA	3 cut(s)	349, 533, 866
AjuI	GAANNNNNNNTTGG	4 cut(s)	329, 361, 644, 676
AluBI	AGCT	3 cut(s)	592, 673, 679
AluI	AGCT	3 cut(s)	592, 673, 679
Alw21I	GWGCWC	1 cut(s)	193
Alw26I	GTCTC	5 cut(s)	259, 317, 345, 424, 507
AlwI	GGATC	6 cut(s)	77, 90, 130, 245, 278, 319
AlwNI	CAGNNNCTG	1 cut(s)	273
AoxI	GGCC	2 cut(s)	202, 483
ApeKI	GCWGC	1 cut(s)	73
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
AspLEI	GCGC	3 cut(s)	22, 378, 454
AspS9I	GGNCC	3 cut(s)	53, 483, 724
AsuC2I	CCSGG	2 cut(s)	78, 201
AsuHPI	GGTGA	1 cut(s)	360
AvaII	GGWCC	2 cut(s)	53, 724
AxyI	CCTNAGG	1 cut(s)	479
BamHI	GGATCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	1 cut(s)	60
BccI	CCATC	3 cut(s)	18, 337, 426
BceAI	ACGGC	5 cut(s)	33, 162, 244, 465, 780
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	2 cut(s)	78, 201
BcoDI	GTCTC	5 cut(s)	259, 317, 345, 424, 507
BfaI	CTAG	1 cut(s)	759
BfrI	CTTAAG	1 cut(s)	511
BglI	GCCNNNNNGGC	1 cut(s)	201
BisI	GCNGC	4 cut(s)	49, 74, 374, 742
BlsI	GCNGC	4 cut(s)	50, 75, 375, 743
Bme1390I	CCNGG	2 cut(s)	78, 201
Bme18I	GGWCC	2 cut(s)	53, 724
BmgT120I	GGNCC	3 cut(s)	53, 483, 724
BmiI	GGNNCC	5 cut(s)	84, 117, 262, 442, 725
BmrFI	CCNGG	2 cut(s)	78, 201
BmrI	ACTGGG	1 cut(s)	804
BmsI	GCATC	1 cut(s)	753
BmuI	ACTGGG	1 cut(s)	804
BpmI	CTGGAG	1 cut(s)	705
BpuMI	CCSGG	2 cut(s)	78, 201
BsaHI	GRCGYC	5 cut(s)	172, 252, 398, 424, 640
BsaI	GGTCTC	2 cut(s)	317, 507
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	2 cut(s)	554, 815
Bse1I	ACTGG	2 cut(s)	727, 810
Bse21I	CCTNAGG	1 cut(s)	479
BseDI	CCNNGG	1 cut(s)	77
BseGI	GGATG	4 cut(s)	46, 329, 670, 744
BseLI	CCNNNNNNNGG	2 cut(s)	554, 815
BseMII	CTCAG	3 cut(s)	420, 504, 518
BseNI	ACTGG	2 cut(s)	727, 810
BseRI	GAGGAG	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	60
Bsh1236I	CGCG	3 cut(s)	22, 242, 376
BshFI	GGCC	2 cut(s)	204, 485
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	1 cut(s)	193
BsiSI	CCGG	4 cut(s)	77, 94, 201, 258
BslFI	GGGAC	2 cut(s)	292, 725
BslI	CCNNNNNNNGG	2 cut(s)	554, 815
BsmAI	GTCTC	5 cut(s)	259, 317, 345, 424, 507
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	2 cut(s)	292, 725
BsnI	GGCC	2 cut(s)	204, 485
Bso31I	GGTCTC	2 cut(s)	317, 507
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	7 cut(s)	82, 135, 142, 237, 270, 324, 365
BspACI	CCGC	7 cut(s)	34, 48, 51, 246, 371, 374, 742
BspANI	GGCC	2 cut(s)	204, 485
BspCNI	CTCAG	3 cut(s)	419, 503, 517
BspFNI	CGCG	3 cut(s)	22, 242, 376
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	5 cut(s)	84, 117, 262, 442, 725
BspPI	GGATC	6 cut(s)	77, 90, 130, 245, 278, 319
BspT107I	GGYRCC	1 cut(s)	260
BspTI	CTTAAG	1 cut(s)	511
BspTNI	GGTCTC	2 cut(s)	317, 507
BsrI	ACTGG	2 cut(s)	727, 810
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	7 cut(s)	82, 135, 142, 237, 270, 324, 365
BssNI	GRCGYC	5 cut(s)	172, 252, 398, 424, 640
Bst4CI	ACNGT	4 cut(s)	209, 265, 359, 522
BstACI	GRCGYC	5 cut(s)	172, 252, 398, 424, 640
BstAFI	CTTAAG	1 cut(s)	511
BstC8I	GCNNGC	2 cut(s)	193, 681
BstDEI	CTNAG	5 cut(s)	406, 479, 490, 497, 504
BstF5I	GGATG	4 cut(s)	46, 329, 670, 744
BstFNI	CGCG	3 cut(s)	22, 242, 376
BstHHI	GCGC	3 cut(s)	22, 378, 454
BstKTI	GATC	7 cut(s)	85, 138, 145, 240, 273, 327, 368
BstMAI	GTCTC	5 cut(s)	259, 317, 345, 424, 507
BstMBI	GATC	7 cut(s)	82, 135, 142, 237, 270, 324, 365
BstMWI	GCNNNNNNNGC	6 cut(s)	65, 183, 192, 201, 210, 631
BstSCI	CCNGG	2 cut(s)	76, 199
BstUI	CGCG	3 cut(s)	22, 242, 376
BstV1I	GCAGC	1 cut(s)	60
BstX2I	RGATCY	3 cut(s)	82, 135, 270
BstYI	RGATCY	3 cut(s)	82, 135, 270
Bsu36I	CCTNAGG	1 cut(s)	479
BsuRI	GGCC	2 cut(s)	204, 485
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	4 cut(s)	46, 329, 670, 744
BtsIMutI	CAGTG	1 cut(s)	518
Cac8I	GCNNGC	2 cut(s)	193, 681
CaiI	CAGNNNCTG	1 cut(s)	273
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	3 cut(s)	22, 378, 454
Cfr13I	GGNCC	3 cut(s)	53, 483, 724
CseI	GACGC	3 cut(s)	231, 289, 648
Csp6I	GTAC	1 cut(s)	884
CviAII	CATG	1 cut(s)	149
CviQI	GTAC	1 cut(s)	884
DdeI	CTNAG	5 cut(s)	406, 479, 490, 497, 504
DpnI	GATC	7 cut(s)	84, 137, 144, 239, 272, 326, 367
DpnII	GATC	7 cut(s)	82, 135, 142, 237, 270, 324, 365
DrdI	GACNNNNNNGTC	1 cut(s)	177
DseDI	GACNNNNNNGTC	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	202
EciI	GGCGGA	1 cut(s)	235
Eco31I	GGTCTC	2 cut(s)	317, 507
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	53, 724
Eco57I	CTGAAG	1 cut(s)	695
Eco81I	CCTNAGG	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	483
EcoRV	GATATC	1 cut(s)	91
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	1 cut(s)	152
FaiI	YATR	8 cut(s)	150, 606, 608, 648, 693, 732, 822, 847
FalI	AAGNNNNNCTT	6 cut(s)	329, 361, 628, 660, 698, 730
FaqI	GGGAC	2 cut(s)	292, 725
FatI	CATG	1 cut(s)	148
FauNDI	CATATG	1 cut(s)	606
FbaI	TGATCA	1 cut(s)	142
FblI	GTMKAC	2 cut(s)	14, 181
Fnu4HI	GCNGC	4 cut(s)	49, 74, 374, 742
FokI	GGATG	4 cut(s)	53, 316, 677, 731
Fsp4HI	GCNGC	4 cut(s)	49, 74, 374, 742
FspBI	CTAG	1 cut(s)	759
GlaI	GCGC	3 cut(s)	21, 377, 453
GluI	GCNGC	4 cut(s)	49, 74, 374, 742
GsuI	CTGGAG	1 cut(s)	705
HaeIII	GGCC	2 cut(s)	204, 485
HapII	CCGG	4 cut(s)	77, 94, 201, 258
HgaI	GACGC	3 cut(s)	231, 289, 648
HhaI	GCGC	3 cut(s)	22, 378, 454
Hin1I	GRCGYC	5 cut(s)	172, 252, 398, 424, 640
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	3 cut(s)	20, 376, 452
HinP1I	GCGC	3 cut(s)	20, 376, 452
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	1 cut(s)	217
HpaII	CCGG	4 cut(s)	77, 94, 201, 258
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	5 cut(s)	15, 182, 402, 518, 545
Hpy188I	TCNGA	6 cut(s)	300, 396, 409, 429, 445, 462
Hpy188III	TCNNGA	4 cut(s)	86, 149, 268, 579
Hpy8I	GTNNAC	5 cut(s)	15, 182, 402, 518, 545
Hpy99I	CGWCG	8 cut(s)	19, 174, 177, 213, 254, 325, 400, 426
HpyAV	CCTTC	6 cut(s)	38, 55, 305, 355, 496, 646
HpyCH4III	ACNGT	4 cut(s)	209, 265, 359, 522
HpyCH4IV	ACGT	5 cut(s)	172, 252, 398, 424, 571
HpyCH4V	TGCA	2 cut(s)	619, 625
HpyF10VI	GCNNNNNNNGC	6 cut(s)	65, 183, 192, 201, 210, 631
HpyF3I	CTNAG	5 cut(s)	406, 479, 490, 497, 504
HpySE526I	ACGT	5 cut(s)	172, 252, 398, 424, 571
Hsp92I	GRCGYC	5 cut(s)	172, 252, 398, 424, 640
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	3 cut(s)	20, 376, 452
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	7 cut(s)	82, 135, 142, 237, 270, 324, 365
LmnI	GCTCC	2 cut(s)	121, 446
Lsp1109I	GCAGC	1 cut(s)	60
LweI	GCATC	1 cut(s)	753
MaeI	CTAG	1 cut(s)	759
MaeII	ACGT	5 cut(s)	172, 252, 398, 424, 571
MalI	GATC	7 cut(s)	84, 137, 144, 239, 272, 326, 367
MboI	GATC	7 cut(s)	82, 135, 142, 237, 270, 324, 365
MboII	GAAGA	1 cut(s)	381
MflI	RGATCY	3 cut(s)	82, 135, 270
MhlI	GDGCHC	1 cut(s)	193
MluCI	AATT	2 cut(s)	582, 861
MmeI	TCCRAC	2 cut(s)	133, 419
MseI	TTAA	4 cut(s)	6, 512, 561, 836
MslI	CAYNNNNRTG	2 cut(s)	609, 663
MspCI	CTTAAG	1 cut(s)	511
MspI	CCGG	4 cut(s)	77, 94, 201, 258
MspR9I	CCNGG	2 cut(s)	78, 201
MvnI	CGCG	3 cut(s)	22, 242, 376
MwoI	GCNNNNNNNGC	6 cut(s)	65, 183, 192, 201, 210, 631
NciI	CCSGG	2 cut(s)	78, 201
NdeI	CATATG	1 cut(s)	606
NdeII	GATC	7 cut(s)	82, 135, 142, 237, 270, 324, 365
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	5 cut(s)	84, 117, 262, 442, 725
PagI	TCATGA	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	3 cut(s)	175, 246, 421
PfeI	GAWTC	1 cut(s)	217
PflMI	CCANNNNNTGG	1 cut(s)	554
PkrI	GCNGC	4 cut(s)	50, 75, 375, 743
PspN4I	GGNNCC	5 cut(s)	84, 117, 262, 442, 725
PspPI	GGNCC	3 cut(s)	53, 483, 724
PstNI	CAGNNNCTG	1 cut(s)	273
PsuI	RGATCY	3 cut(s)	82, 135, 270
RsaI	GTAC	1 cut(s)	885
RsaNI	GTAC	1 cut(s)	884
RseI	CAYNNNNRTG	2 cut(s)	609, 663
SalI	GTCGAC	1 cut(s)	13
SaqAI	TTAA	4 cut(s)	6, 512, 561, 836
SatI	GCNGC	4 cut(s)	49, 74, 374, 742
Sau3AI	GATC	7 cut(s)	82, 135, 142, 237, 270, 324, 365
Sau96I	GGNCC	3 cut(s)	53, 483, 724
ScrFI	CCNGG	2 cut(s)	78, 201
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	1 cut(s)	753
SinI	GGWCC	2 cut(s)	53, 724
SmiMI	CAYNNNNRTG	2 cut(s)	609, 663
SmlI	CTYRAG	1 cut(s)	511
SmoI	CTYRAG	1 cut(s)	511
Sse9I	AATT	2 cut(s)	582, 861
SsiI	CCGC	7 cut(s)	34, 48, 51, 246, 371, 374, 742
SspMI	CTAG	1 cut(s)	759
StyD4I	CCNGG	2 cut(s)	76, 199
TaaI	ACNGT	4 cut(s)	209, 265, 359, 522
TaiI	ACGT	5 cut(s)	175, 255, 401, 427, 574
TaqI	TCGA	5 cut(s)	14, 157, 169, 421, 436
TasI	AATT	2 cut(s)	582, 861
TatI	WGTACW	1 cut(s)	883
TauI	GCSGC	3 cut(s)	51, 376, 744
TfiI	GAWTC	1 cut(s)	217
Tru1I	TTAA	4 cut(s)	6, 512, 561, 836
Tru9I	TTAA	4 cut(s)	6, 512, 561, 836
TscAI	CASTG	1 cut(s)	525
TseI	GCWGC	1 cut(s)	73
TspDTI	ATGAA	3 cut(s)	57, 165, 623
TspGWI	ACGGA	2 cut(s)	128, 737
TspRI	CASTG	1 cut(s)	525
Van91I	CCANNNNNTGG	1 cut(s)	554
Vha464I	CTTAAG	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	53, 724
XmiI	GTMKAC	2 cut(s)	14, 181
XspI	CTAG	1 cut(s)	759
ZraI	GACGTC	4 cut(s)	173, 253, 399, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.