Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Forward (+)

83108268 .. 83110696

Gene Structure 2429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53636

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGTTCACGTCGTCTTCTACCGCAATTATGGAAAGACTTTCAAGAAGCCAAGACGTCCCTATGAGAAGGAACGTTTGGATGCTGAGCTGAAGCTTGTAGGAGAATATGGGCTTCGGTGCAAGAGGGAGTTGTGGAGGGTTCAGTATGCTTTGAGCCGCATCCGTAATGCTGCCAGGGAACTTCTTACCCTGGATGAGAAGAATCCTCGCCGTATCTTTGAGGGTGAGGCTCTTCTGCGCAGGATGAACAGGTTTGGGCTTCTGGAAGAGAGCCAGAACAAGCTCGATTACGTCCTTGCACTCACTGTTGAGAACTTCCTTGAGAGGCGTCTTCAGACCCAAGTGTTTAAATCTGGTATGGCCAAGTCCATCCATCACGCCAGGGTTCTCATCAGGCAAAGGCACATCAGGGTTGGAAGGCAGGTGGTGAACATTCCATCATTCATGGTGAGAATTGATTCTGAGAAGCACATCGACTTTGCCATCACAAGTCCCCTTGGAGGAGGCCGCCCCGGAAGAGTGAAGAGAAGGAACCAGAAGGCCGCTGCCAAGAAGGCAGCTGGTGGTGATGGAGACGAGGAAGATGAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

197

Amino Acids

23.03

Weight (kDa)

10.26

Isoelectric Point (pI)

56.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	8 - 108	5e-14	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	109 - 152	2.3e-12	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	412
AatII	GACGTC	1 cut(s)	58
Acc16I	TGCGCA	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	412
AciI	CCGC	4 cut(s)	22, 157, 508, 543
AclI	AACGTT	1 cut(s)	73
AcoI	YGGCCR	1 cut(s)	360
AcuI	CTGAAG	2 cut(s)	110, 317
AcyI	GRCGYC	2 cut(s)	55, 328
AfiI	CCNNNNNNNGG	1 cut(s)	500
AgsI	TTSAA	1 cut(s)	43
AjiI	CACGTC	1 cut(s)	10
AjnI	CCWGG	3 cut(s)	173, 189, 380
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	4 cut(s)	88, 94, 283, 560
AluI	AGCT	4 cut(s)	88, 94, 283, 560
Alw26I	GTCTC	1 cut(s)	567
AoxI	GGCC	3 cut(s)	360, 505, 540
ApeKI	GCWGC	3 cut(s)	170, 545, 557
Asp700I	GAANNNNTTC	1 cut(s)	457
AspLEI	GCGC	1 cut(s)	240
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	4 cut(s)	236, 439, 460, 578
BalI	TGGCCA	1 cut(s)	362
BbsI	GAAGAC	2 cut(s)	7, 323
BbvI	GCAGC	3 cut(s)	157, 532, 569
BccI	CCATC	5 cut(s)	377, 381, 445, 491, 563
BceAI	ACGGC	1 cut(s)	195
BciT130I	CCWGG	3 cut(s)	175, 191, 382
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	567
BfuAI	ACCTGC	1 cut(s)	412
BglI	GCCNNNNNGGC	1 cut(s)	554
BisI	GCNGC	6 cut(s)	157, 171, 508, 543, 546, 558
BlpI	GCTNAGC	1 cut(s)	84
BlsI	GCNGC	6 cut(s)	158, 172, 509, 544, 547, 559
Bme1390I	CCNGG	4 cut(s)	175, 191, 382, 513
BmgBI	CACGTC	1 cut(s)	10
BmiI	GGNNCC	1 cut(s)	533
BmrFI	CCNGG	4 cut(s)	175, 191, 382, 513
BmsI	GCATC	2 cut(s)	70, 168
BpiI	GAAGAC	2 cut(s)	7, 323
Bpu1102I	GCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	513
BsaHI	GRCGYC	2 cut(s)	55, 328
BsaJI	CCNNGG	5 cut(s)	174, 189, 381, 496, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	500
BseBI	CCWGG	3 cut(s)	175, 191, 382
BseDI	CCNNGG	5 cut(s)	174, 189, 381, 496, 511
BseGI	GGATG	5 cut(s)	85, 159, 199, 249, 369
BseLI	CCNNNNNNNGG	1 cut(s)	500
BseMII	CTCAG	2 cut(s)	75, 453
BseRI	GAGGAG	1 cut(s)	516
BseXI	GCAGC	3 cut(s)	157, 532, 569
BshFI	GGCC	3 cut(s)	362, 507, 542
BsiSI	CCGG	1 cut(s)	513
BslFI	GGGAC	2 cut(s)	42, 477
BslI	CCNNNNNNNGG	1 cut(s)	500
BsmAI	GTCTC	1 cut(s)	567
BsmBI	CGTCTC	1 cut(s)	567
BsmFI	GGGAC	2 cut(s)	42, 477
BsnI	GGCC	3 cut(s)	362, 507, 542
Bsp1720I	GCTNAGC	1 cut(s)	84
BspACI	CCGC	4 cut(s)	22, 157, 508, 543
BspANI	GGCC	3 cut(s)	362, 507, 542
BspCNI	CTCAG	2 cut(s)	76, 454
BspLI	GGNNCC	1 cut(s)	533
BspMI	ACCTGC	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	237
BssECI	CCNNGG	5 cut(s)	174, 189, 381, 496, 511
BssNI	GRCGYC	2 cut(s)	55, 328
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	3 cut(s)	175, 191, 382
Bst4CI	ACNGT	1 cut(s)	307
Bst6I	CTCTTC	4 cut(s)	237, 261, 511, 518
BstACI	GRCGYC	2 cut(s)	55, 328
BstDEI	CTNAG	2 cut(s)	84, 462
BstF5I	GGATG	5 cut(s)	85, 159, 199, 249, 369
BstHHI	GCGC	1 cut(s)	240
BstMAI	GTCTC	1 cut(s)	567
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNI	CCWGG	3 cut(s)	175, 191, 382
BstSCI	CCNGG	4 cut(s)	173, 189, 380, 511
BstV1I	GCAGC	3 cut(s)	157, 532, 569
BstV2I	GAAGAC	2 cut(s)	7, 323
BsuRI	GGCC	3 cut(s)	362, 507, 542
BtrI	CACGTC	1 cut(s)	10
BtsCI	GGATG	5 cut(s)	85, 159, 199, 249, 369
BtsIMutI	CAGTG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	412
CfoI	GCGC	1 cut(s)	240
CseI	GACGC	1 cut(s)	317
CviAII	CATG	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	84, 462
DraI	TTTAAA	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	360
Eam1104I	CTCTTC	4 cut(s)	237, 261, 511, 518
EarI	CTCTTC	4 cut(s)	237, 261, 511, 518
Eco130I	CCWWGG	1 cut(s)	496
Eco57I	CTGAAG	2 cut(s)	110, 317
EcoRII	CCWGG	3 cut(s)	173, 189, 380
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
Esp3I	CGTCTC	1 cut(s)	567
FaeI	CATG	1 cut(s)	448
FaiI	YATR	6 cut(s)	30, 63, 108, 147, 359, 446
FaqI	GGGAC	2 cut(s)	42, 477
FatI	CATG	1 cut(s)	444
Fnu4HI	GCNGC	6 cut(s)	157, 171, 508, 543, 546, 558
FokI	GGATG	5 cut(s)	92, 146, 206, 256, 356
Fsp4HI	GCNGC	6 cut(s)	157, 171, 508, 543, 546, 558
FspI	TGCGCA	1 cut(s)	239
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	6 cut(s)	157, 171, 508, 543, 546, 558
HaeIII	GGCC	3 cut(s)	362, 507, 542
HapII	CCGG	1 cut(s)	513
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	1 cut(s)	240
Hin1I	GRCGYC	2 cut(s)	55, 328
Hin1II	CATG	1 cut(s)	448
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	202, 458
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	4 cut(s)	236, 439, 460, 578
Hpy166II	GTNNAC	2 cut(s)	7, 430
Hpy188I	TCNGA	2 cut(s)	336, 463
Hpy188III	TCNNGA	2 cut(s)	43, 263
Hpy8I	GTNNAC	2 cut(s)	7, 430
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	5 cut(s)	61, 411, 522, 532, 547
HpyCH4III	ACNGT	1 cut(s)	307
HpyCH4IV	ACGT	4 cut(s)	9, 55, 73, 291
HpyCH4V	TGCA	2 cut(s)	120, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	2 cut(s)	84, 462
HpySE526I	ACGT	4 cut(s)	9, 55, 73, 291
Hsp92I	GRCGYC	2 cut(s)	55, 328
Hsp92II	CATG	1 cut(s)	448
HspAI	GCGC	1 cut(s)	238
LguI	GCTCTTC	1 cut(s)	237
Lsp1109I	GCAGC	3 cut(s)	157, 532, 569
LweI	GCATC	2 cut(s)	70, 168
MaeII	ACGT	4 cut(s)	9, 55, 73, 291
MboII	GAAGA	8 cut(s)	7, 211, 224, 278, 323, 528, 535, 593
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	2 cut(s)	25, 453
MluNI	TGGCCA	1 cut(s)	362
MmeI	TCCRAC	1 cut(s)	394
Mox20I	TGGCCA	1 cut(s)	362
MroXI	GAANNNNTTC	1 cut(s)	457
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	362
MspA1I	CMGCKG	2 cut(s)	545, 560
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	4 cut(s)	175, 191, 382, 513
MvaI	CCWGG	3 cut(s)	175, 191, 382
MwoI	GCNNNNNNNGC	1 cut(s)	554
NciI	CCSGG	1 cut(s)	513
NlaIII	CATG	1 cut(s)	448
NlaIV	GGNNCC	1 cut(s)	533
NsbI	TGCGCA	1 cut(s)	239
PaqCI	CACCTGC	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	237
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	2 cut(s)	202, 458
PkrI	GCNGC	6 cut(s)	158, 172, 509, 544, 547, 559
Psp1406I	AACGTT	1 cut(s)	73
Psp6I	CCWGG	3 cut(s)	173, 189, 380
PspGI	CCWGG	3 cut(s)	173, 189, 380
PspN4I	GGNNCC	1 cut(s)	533
PvuII	CAGCTG	1 cut(s)	560
SapI	GCTCTTC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	6 cut(s)	157, 171, 508, 543, 546, 558
ScrFI	CCNGG	4 cut(s)	175, 191, 382, 513
SfaNI	GCATC	2 cut(s)	70, 168
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	25, 453
SsiI	CCGC	4 cut(s)	22, 157, 508, 543
StyD4I	CCNGG	4 cut(s)	173, 189, 380, 511
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	307
TaiI	ACGT	4 cut(s)	12, 58, 76, 294
TaqI	TCGA	2 cut(s)	285, 474
TasI	AATT	2 cut(s)	25, 453
TauI	GCSGC	3 cut(s)	159, 510, 545
TfiI	GAWTC	2 cut(s)	202, 458
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	1 cut(s)	310
TseI	GCWGC	3 cut(s)	170, 545, 557
TspDTI	ATGAA	2 cut(s)	260, 433
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	457
ZraI	GACGTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.