Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

8934978 .. 8935382

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22763

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGAGACAATGTTCATGTTTAGAGAAGCCAAGACGTCCTTATGAGAAGGAACATTCGGATGTTGAGCTGAAGCTTGTTGGAGAATATGGGCTTCGGCACAAGAGGGACTTGTGGAGGGTCCAGTATGCTTTGAGCCGCATCCGTAATGCTGCTAGGGAACTTCTTACTTTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071944 GO:0080090 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

58

Amino Acids

7.03

Weight (kDa)

9.44

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	37
AciI	CCGC	1 cut(s)	136
AcuI	CTGAAG	1 cut(s)	89
AcyI	GRCGYC	1 cut(s)	34
AluBI	AGCT	2 cut(s)	67, 73
AluI	AGCT	2 cut(s)	67, 73
ApeKI	GCWGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	153, 175
BisI	GCNGC	2 cut(s)	136, 150
BlsI	GCNGC	2 cut(s)	137, 151
Bme18I	GGWCC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	119
BmsI	GCATC	1 cut(s)	147
BsaHI	GRCGYC	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	121
BseGI	GGATG	2 cut(s)	64, 138
BseNI	ACTGG	1 cut(s)	121
BseXI	GCAGC	1 cut(s)	136
BslFI	GGGAC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	119
BspACI	CCGC	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	34
BstACI	GRCGYC	1 cut(s)	34
BstF5I	GGATG	2 cut(s)	64, 138
BstV1I	GCAGC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	64, 138
Cfr13I	GGNCC	1 cut(s)	118
CviAII	CATG	1 cut(s)	15
CviJI	RGCY	5 cut(s)	28, 67, 73, 91, 135
CviKI_1	RGCY	5 cut(s)	28, 67, 73, 91, 135
Eco47I	GGWCC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	89
FaeI	CATG	1 cut(s)	18
FaiI	YATR	4 cut(s)	16, 42, 87, 126
FalI	AAGNNNNNCTT	4 cut(s)	22, 54, 92, 124
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	136, 150
FokI	GGATG	2 cut(s)	71, 125
Fsp4HI	GCNGC	2 cut(s)	136, 150
FspBI	CTAG	2 cut(s)	153, 175
GluI	GCNGC	2 cut(s)	136, 150
Hin1I	GRCGYC	1 cut(s)	34
Hin1II	CATG	1 cut(s)	18
HindIII	AAGCTT	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	34
HpySE526I	ACGT	1 cut(s)	34
Hsp92I	GRCGYC	1 cut(s)	34
Hsp92II	CATG	1 cut(s)	18
LpnPI	CCDG	1 cut(s)	134
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	2 cut(s)	153, 175
MaeII	ACGT	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	2 cut(s)	96, 108
MslI	CAYNNNNRTG	1 cut(s)	57
NlaIII	CATG	1 cut(s)	18
NlaIV	GGNNCC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	137, 151
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	57
SatI	GCNGC	2 cut(s)	136, 150
Sau96I	GGNCC	1 cut(s)	118
SetI	ASST	3 cut(s)	37, 69, 75
SfaNI	GCATC	1 cut(s)	147
SgeI	CNNG	7 cut(s)	27, 42, 86, 112, 121, 133, 165
SinI	GGWCC	1 cut(s)	118
SmiMI	CAYNNNNRTG	1 cut(s)	57
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	2 cut(s)	153, 175
TaiI	ACGT	1 cut(s)	37
TauI	GCSGC	1 cut(s)	138
TseI	GCWGC	1 cut(s)	149
TspGWI	ACGGA	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	118
XspI	CTAG	2 cut(s)	153, 175
ZraI	GACGTC	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.