Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Forward (+)

28073195 .. 28074805

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGCAACTCGTGGATCCGGAGATAATGAAAATCCGGATGGTCTCGGAGGAGATCATCCATTGCTCGAGGAGCAGAGCACCTCGTCACTCCTCCGTTATCTCCTCAATCCTCAACAAGCTCAAGAATGTAGTGATGAGACAATGTTCATGTTTAGAGAAGCCAAGACGTCCGTATGAGAAGGAACATTTGGATGTTGAGCTGAAGCTTGTTGGAGAATATGGGCTTCGGCGCAAGAGGGACTTGTGGAGGGTCCAGTATGCTTTGAGCCGCATCCGTAATGCGCTAGGGAACTTCTTACTCGGACAAGAAAAATCCTCGCCGTATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

109

Amino Acids

12.84

Weight (kDa)

9.89

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	169
AccIII	TCCGGA	2 cut(s)	16, 33
AciI	CCGC	1 cut(s)	268
AclWI	GGATC	2 cut(s)	8, 21
AcuI	CTGAAG	1 cut(s)	221
AcyI	GRCGYC	1 cut(s)	166
AjuI	GAANNNNNNNTTGG	2 cut(s)	170, 202
AluBI	AGCT	3 cut(s)	118, 199, 205
AluI	AGCT	3 cut(s)	118, 199, 205
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	46, 130
AlwI	GGATC	2 cut(s)	8, 21
Ama87I	CYCGRG	1 cut(s)	64
Aor13HI	TCCGGA	2 cut(s)	16, 33
AspLEI	GCGC	2 cut(s)	231, 283
AspS9I	GGNCC	1 cut(s)	250
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	250
BamHI	GGATCC	1 cut(s)	13
BauI	CACGAG	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	46, 130
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	1 cut(s)	268
BlsI	GCNGC	1 cut(s)	269
Bme18I	GGWCC	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	250
BmiI	GGNNCC	2 cut(s)	15, 251
BmsI	GCATC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	46
BsaWI	WCCGGW	2 cut(s)	16, 33
Bse1I	ACTGG	1 cut(s)	253
Bse3DI	GCAATG	1 cut(s)	58
BseAI	TCCGGA	2 cut(s)	16, 33
BseGI	GGATG	4 cut(s)	42, 54, 196, 270
BseMI	GCAATG	1 cut(s)	58
BseNI	ACTGG	1 cut(s)	253
BseRI	GAGGAG	4 cut(s)	62, 79, 82, 91
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	17, 34
BslFI	GGGAC	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	46, 130
BsmFI	GGGAC	1 cut(s)	251
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp13I	TCCGGA	2 cut(s)	16, 33
Bsp143I	GATC	2 cut(s)	13, 51
BspACI	CCGC	1 cut(s)	268
BspEI	TCCGGA	2 cut(s)	16, 33
BspLI	GGNNCC	2 cut(s)	15, 251
BspPI	GGATC	2 cut(s)	8, 21
BspTNI	GGTCTC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	58
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	2 cut(s)	13, 51
BssNI	GRCGYC	1 cut(s)	166
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
BstACI	GRCGYC	1 cut(s)	166
BstF5I	GGATG	4 cut(s)	42, 54, 196, 270
BstHHI	GCGC	2 cut(s)	231, 283
BstKTI	GATC	2 cut(s)	16, 54
BstMAI	GTCTC	2 cut(s)	46, 130
BstMBI	GATC	2 cut(s)	13, 51
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtsCI	GGATG	4 cut(s)	42, 54, 196, 270
CfoI	GCGC	2 cut(s)	231, 283
Cfr13I	GGNCC	1 cut(s)	250
CviAII	CATG	1 cut(s)	147
CviJI	RGCY	6 cut(s)	118, 160, 199, 205, 223, 267
CviKI_1	RGCY	6 cut(s)	118, 160, 199, 205, 223, 267
DpnI	GATC	2 cut(s)	15, 53
DpnII	GATC	2 cut(s)	13, 51
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	64
FaeI	CATG	1 cut(s)	150
FaiI	YATR	4 cut(s)	148, 174, 219, 258
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FaqI	GGGAC	1 cut(s)	251
FatI	CATG	1 cut(s)	146
Fnu4HI	GCNGC	1 cut(s)	268
FokI	GGATG	4 cut(s)	41, 49, 203, 257
Fsp4HI	GCNGC	1 cut(s)	268
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	2 cut(s)	230, 282
GluI	GCNGC	1 cut(s)	268
HapII	CCGG	2 cut(s)	17, 34
HhaI	GCGC	2 cut(s)	231, 283
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	1 cut(s)	150
Hin6I	GCGC	2 cut(s)	229, 281
HinP1I	GCGC	2 cut(s)	229, 281
HindIII	AAGCTT	1 cut(s)	203
HpaII	CCGG	2 cut(s)	17, 34
Hpy188I	TCNGA	2 cut(s)	46, 302
Hpy188III	TCNNGA	3 cut(s)	17, 34, 121
HpyAV	CCTTC	1 cut(s)	172
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	166
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	1 cut(s)	150
HspAI	GCGC	2 cut(s)	229, 281
Kpn2I	TCCGGA	2 cut(s)	16, 33
Kzo9I	GATC	2 cut(s)	13, 51
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	3 cut(s)	30, 47, 266
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	15, 53
MboI	GATC	2 cut(s)	13, 51
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	79
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	9 cut(s)	40, 60, 90, 100, 112, 119, 228, 240, 325
MroI	TCCGGA	2 cut(s)	16, 33
MslI	CAYNNNNRTG	1 cut(s)	189
MspI	CCGG	2 cut(s)	17, 34
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	2 cut(s)	13, 51
NlaIII	CATG	1 cut(s)	150
NlaIV	GGNNCC	2 cut(s)	15, 251
NmuCI	GTSAC	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	15, 251
PspPI	GGNCC	1 cut(s)	250
PspXI	VCTCGAGB	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	189
SatI	GCNGC	1 cut(s)	268
Sau3AI	GATC	2 cut(s)	13, 51
Sau96I	GGNCC	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	5 cut(s)	82, 120, 169, 201, 207
SfaNI	GCATC	1 cut(s)	279
Sfr274I	CTCGAG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	250
SlaI	CTCGAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	2 cut(s)	64, 119
SmoI	CTYRAG	2 cut(s)	64, 119
SsiI	CCGC	1 cut(s)	268
SspMI	CTAG	1 cut(s)	284
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	65
TauI	GCSGC	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	41, 135
TspGWI	ACGGA	3 cut(s)	82, 159, 263
VpaK11BI	GGWCC	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	64
XspI	CTAG	1 cut(s)	284
ZraI	GACGTC	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.