Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

2472883 .. 2474921

Gene Structure 2039 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04070.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCCCGAAAAGGGCAAAGTCCAATCCAAAGGGTTTGCGTATAAAGCGAAACAAAGTGCCATTTGTGTCGTCCTCTTCTCTCAGAACTCGGCAGCGCGAGCCACCCCTCTCTCCCTCACTCTCCTTTCTGGATCTGACCTAGGGCTACCCAGCCATGGTGCACGTCGTCCATTACCGCAACTGTCAGATGGGAAGACTTTCAAGAAGCCACGTCGGCCTTATGAGAAAGAACGTTTGGATGCTGAGCTGAAGCTGGTTGGGGAATATGGACTCCGCGCAAAGAGGGAACTGTGGAGGGTTCAGTATTCTCTGAGTCGTATCCGTAATGCTGCCAGGGAACTCCTTACCCTGGATGAGAAAAATCCTCGCCGTATCTTTGAGGGTGAGGCTCTTCTTCGTAGGATGAACAGGTATGGGCTTCTGGATGAGAGCCAGAACAAGCTCGATTATGTGTTGGCTTTGACTGTGGAGAACTTTTTGGAGCGTCGTCTTCAAACCCTTGTGTTCAAAAGTGGTATGGCCAAGTCCATCCACCACGCCAGAGTTCTCATCAGGCAAAGGCACATCAGGGTCGGAAGGCAGTTGGTCAACATCCCATCTTTCATGGTGAGGGTTGACTCCCAGAAGCACATTGACTTTTCACTCACCAGTCCCCTCGGAGGTGGGCGCCCCGGAAGAGTGAAGAGAAGGAACCAGAAGGCCGCTGCCAAGAAGGCTGCTGGTGGTGATGGCGACGAAGAGGAAGAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

251

Amino Acids

28.33

Weight (kDa)

10.38

Isoelectric Point (pI)

56.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	666
AccII	CGCG	2 cut(s)	97, 276
AciI	CCGC	3 cut(s)	176, 274, 702
AclI	AACGTT	1 cut(s)	232
AclWI	GGATC	1 cut(s)	139
AcoI	YGGCCR	1 cut(s)	519
AcuI	CTGAAG	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	667
AfiI	CCNNNNNNNGG	4 cut(s)	11, 155, 349, 659
AgsI	TTSAA	3 cut(s)	202, 494, 508
AjiI	CACGTC	2 cut(s)	164, 212
AjnI	CCWGG	2 cut(s)	332, 348
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	3 cut(s)	247, 253, 442
AluI	AGCT	3 cut(s)	247, 253, 442
Alw21I	GWGCWC	1 cut(s)	163
Alw44I	GTGCAC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	139
AoxI	GGCC	3 cut(s)	215, 519, 699
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	4 cut(s)	92, 329, 704, 716
Asp700I	GAANNNNTTC	1 cut(s)	197
AspA2I	CCTAGG	1 cut(s)	139
AspLEI	GCGC	3 cut(s)	97, 278, 669
AsuC2I	CCSGG	1 cut(s)	672
AsuHPI	GGTGA	4 cut(s)	395, 619, 637, 737
AvrII	CCTAGG	1 cut(s)	139
BaeGI	GKGCMC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	666
BbsI	GAAGAC	2 cut(s)	200, 482
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	4 cut(s)	104, 316, 691, 703
BccI	CCATC	4 cut(s)	182, 536, 604, 722
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	2 cut(s)	334, 350
BciVI	GTATCC	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	672
BfaI	CTAG	1 cut(s)	140
BfoI	RGCGCY	1 cut(s)	670
BfuI	GTATCC	1 cut(s)	329
BglI	GCCNNNNNGGC	2 cut(s)	214, 713
BisI	GCNGC	5 cut(s)	93, 330, 702, 705, 717
BlnI	CCTAGG	1 cut(s)	139
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	5 cut(s)	94, 331, 703, 706, 718
Bme1390I	CCNGG	3 cut(s)	334, 350, 672
BmgBI	CACGTC	2 cut(s)	164, 212
BmiI	GGNNCC	2 cut(s)	668, 692
BmrFI	CCNGG	3 cut(s)	334, 350, 672
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	2 cut(s)	200, 482
Bpu1102I	GCTNAGC	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	667
BsaJI	CCNNGG	6 cut(s)	139, 154, 333, 348, 655, 670
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 155, 349, 659
Bse1I	ACTGG	1 cut(s)	648
BseBI	CCWGG	2 cut(s)	334, 350
BseDI	CCNNGG	6 cut(s)	139, 154, 333, 348, 655, 670
BseGI	GGATG	6 cut(s)	244, 358, 408, 430, 528, 591
BseLI	CCNNNNNNNGG	4 cut(s)	11, 155, 349, 659
BseMII	CTCAG	3 cut(s)	95, 234, 302
BseNI	ACTGG	1 cut(s)	648
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	4 cut(s)	104, 316, 691, 703
BseYI	CCCAGC	1 cut(s)	149
Bsh1236I	CGCG	2 cut(s)	97, 276
BshFI	GGCC	3 cut(s)	217, 521, 701
BshNI	GGYRCC	1 cut(s)	666
BsiHKAI	GWGCWC	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	636
BslI	CCNNNNNNNGG	4 cut(s)	11, 155, 349, 659
BsmFI	GGGAC	1 cut(s)	636
BsnI	GGCC	3 cut(s)	217, 521, 701
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	1 cut(s)	131
Bsp1720I	GCTNAGC	1 cut(s)	243
Bsp19I	CCATGG	1 cut(s)	154
BspACI	CCGC	3 cut(s)	176, 274, 702
BspANI	GGCC	3 cut(s)	217, 521, 701
BspCNI	CTCAG	3 cut(s)	94, 235, 303
BspFNI	CGCG	2 cut(s)	97, 276
BspLI	GGNNCC	2 cut(s)	668, 692
BspPI	GGATC	1 cut(s)	139
BspQI	GCTCTTC	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	666
BsrI	ACTGG	1 cut(s)	648
BssECI	CCNNGG	6 cut(s)	139, 154, 333, 348, 655, 670
BssMI	GATC	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	667
BssT1I	CCWWGG	2 cut(s)	139, 154
Bst2UI	CCWGG	2 cut(s)	334, 350
Bst4CI	ACNGT	3 cut(s)	183, 291, 466
Bst6I	CTCTTC	5 cut(s)	80, 396, 670, 677, 732
BstACI	GRCGYC	1 cut(s)	667
BstC8I	GCNNGC	1 cut(s)	99
BstDEI	CTNAG	3 cut(s)	81, 243, 311
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	6 cut(s)	244, 358, 408, 430, 528, 591
BstFNI	CGCG	2 cut(s)	97, 276
BstH2I	RGCGCY	1 cut(s)	670
BstHHI	GCGC	3 cut(s)	97, 278, 669
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 98, 214, 713
BstNI	CCWGG	2 cut(s)	334, 350
BstSCI	CCNGG	3 cut(s)	332, 348, 670
BstSLI	GKGCMC	1 cut(s)	163
BstUI	CGCG	2 cut(s)	97, 276
BstV1I	GCAGC	4 cut(s)	104, 316, 691, 703
BstV2I	GAAGAC	2 cut(s)	200, 482
BstX2I	RGATCY	1 cut(s)	131
BstYI	RGATCY	1 cut(s)	131
BsuI	GTATCC	1 cut(s)	329
BsuRI	GGCC	3 cut(s)	217, 521, 701
BtgI	CCRYGG	1 cut(s)	154
BtrI	CACGTC	2 cut(s)	164, 212
BtsCI	GGATG	6 cut(s)	244, 358, 408, 430, 528, 591
Cac8I	GCNNGC	1 cut(s)	99
CfoI	GCGC	3 cut(s)	97, 278, 669
CseI	GACGC	1 cut(s)	473
CviAII	CATG	2 cut(s)	155, 604
DdeI	CTNAG	3 cut(s)	81, 243, 311
DinI	GGCGCC	1 cut(s)	668
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
EaeI	YGGCCR	1 cut(s)	519
Eam1104I	CTCTTC	5 cut(s)	80, 396, 670, 677, 732
EarI	CTCTTC	5 cut(s)	80, 396, 670, 677, 732
Eco130I	CCWWGG	2 cut(s)	139, 154
Eco57I	CTGAAG	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	332, 348
EcoT14I	CCWWGG	2 cut(s)	139, 154
EgeI	GGCGCC	1 cut(s)	668
EheI	GGCGCC	1 cut(s)	668
ErhI	CCWWGG	2 cut(s)	139, 154
FaeI	CATG	2 cut(s)	158, 607
FaiI	YATR	8 cut(s)	42, 156, 222, 267, 414, 450, 518, 605
FaqI	GGGAC	1 cut(s)	636
FatI	CATG	2 cut(s)	154, 603
Fnu4HI	GCNGC	5 cut(s)	93, 330, 702, 705, 717
FokI	GGATG	6 cut(s)	251, 365, 415, 437, 515, 578
Fsp4HI	GCNGC	5 cut(s)	93, 330, 702, 705, 717
FspBI	CTAG	1 cut(s)	140
GlaI	GCGC	3 cut(s)	96, 277, 668
GluI	GCNGC	5 cut(s)	93, 330, 702, 705, 717
GsaI	CCCAGC	1 cut(s)	153
HaeII	RGCGCY	1 cut(s)	670
HaeIII	GGCC	3 cut(s)	217, 521, 701
HapII	CCGG	1 cut(s)	672
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	3 cut(s)	97, 278, 669
Hin1I	GRCGYC	1 cut(s)	667
Hin1II	CATG	2 cut(s)	158, 607
Hin6I	GCGC	3 cut(s)	95, 276, 667
HinP1I	GCGC	3 cut(s)	95, 276, 667
HincII	GTYRAC	2 cut(s)	589, 616
HindII	GTYRAC	2 cut(s)	589, 616
HinfI	GANTC	3 cut(s)	270, 313, 617
HpaII	CCGG	1 cut(s)	672
HphI	GGTGA	4 cut(s)	395, 619, 637, 737
Hpy166II	GTNNAC	3 cut(s)	161, 589, 616
Hpy188I	TCNGA	6 cut(s)	84, 136, 187, 312, 575, 659
Hpy188III	TCNNGA	3 cut(s)	129, 202, 422
Hpy8I	GTNNAC	3 cut(s)	161, 589, 616
Hpy99I	CGWCG	4 cut(s)	168, 216, 489, 737
HpyAV	CCTTC	4 cut(s)	570, 681, 691, 706
HpyCH4III	ACNGT	3 cut(s)	183, 291, 466
HpyCH4IV	ACGT	3 cut(s)	163, 211, 232
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 98, 214, 713
HpyF3I	CTNAG	3 cut(s)	81, 243, 311
HpySE526I	ACGT	3 cut(s)	163, 211, 232
Hsp92I	GRCGYC	1 cut(s)	667
Hsp92II	CATG	2 cut(s)	158, 607
HspAI	GCGC	3 cut(s)	95, 276, 667
KasI	GGCGCC	1 cut(s)	666
Kzo9I	GATC	1 cut(s)	131
LguI	GCTCTTC	1 cut(s)	396
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	4 cut(s)	104, 316, 691, 703
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	3 cut(s)	163, 211, 232
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	8 cut(s)	67, 205, 383, 386, 482, 687, 694, 749
MflI	RGATCY	1 cut(s)	131
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	521
MluNI	TGGCCA	1 cut(s)	521
Mly113I	GGCGCC	1 cut(s)	667
MlyI	GAGTC	3 cut(s)	264, 322, 611
MmeI	TCCRAC	1 cut(s)	553
Mox20I	TGGCCA	1 cut(s)	521
MroXI	GAANNNNTTC	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	521
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	1 cut(s)	672
MspR9I	CCNGG	3 cut(s)	334, 350, 672
MvaI	CCWGG	2 cut(s)	334, 350
MvnI	CGCG	2 cut(s)	97, 276
MwoI	GCNNNNNNNGC	4 cut(s)	44, 98, 214, 713
NarI	GGCGCC	1 cut(s)	667
NciI	CCSGG	1 cut(s)	672
NcoI	CCATGG	1 cut(s)	154
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	2 cut(s)	158, 607
NlaIV	GGNNCC	2 cut(s)	668, 692
NmeAIII	GCCGAG	1 cut(s)	68
PciSI	GCTCTTC	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	94, 331, 703, 706, 718
PleI	GAGTC	3 cut(s)	264, 321, 611
PluTI	GGCGCC	1 cut(s)	670
PpsI	GAGTC	3 cut(s)	264, 321, 611
Psp1406I	AACGTT	1 cut(s)	232
Psp6I	CCWGG	2 cut(s)	332, 348
PspFI	CCCAGC	1 cut(s)	149
PspGI	CCWGG	2 cut(s)	332, 348
PspN4I	GGNNCC	2 cut(s)	668, 692
PsuI	RGATCY	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	396
SatI	GCNGC	5 cut(s)	93, 330, 702, 705, 717
Sau3AI	GATC	1 cut(s)	131
SchI	GAGTC	3 cut(s)	264, 322, 611
ScrFI	CCNGG	3 cut(s)	334, 350, 672
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	9 cut(s)	141, 166, 214, 235, 249, 255, 413, 444, 664
SfaNI	GCATC	1 cut(s)	229
SfoI	GGCGCC	1 cut(s)	668
SsiI	CCGC	3 cut(s)	176, 274, 702
SspDI	GGCGCC	1 cut(s)	666
SspMI	CTAG	1 cut(s)	140
StyD4I	CCNGG	3 cut(s)	332, 348, 670
StyI	CCWWGG	2 cut(s)	139, 154
TaaI	ACNGT	3 cut(s)	183, 291, 466
TaiI	ACGT	3 cut(s)	166, 214, 235
TaqI	TCGA	1 cut(s)	444
TauI	GCSGC	1 cut(s)	704
TseI	GCWGC	4 cut(s)	92, 329, 704, 716
TspDTI	ATGAA	2 cut(s)	419, 592
TspGWI	ACGGA	1 cut(s)	311
VneI	GTGCAC	1 cut(s)	159
XmaJI	CCTAGG	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	197
XspI	CTAG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.