Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Forward (+)

23577577 .. 23579698

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG157600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCCAGCTATGGGACATTGCTTGTTGGAATCAATTATGAAACCATCTTGAGCTATTCTGTTGGTATTTCAAGGGAATGTGAAGTTAACATTGGGACAGGTTGTCAAACAACAACAAAATTCCAATTGGATTACTTCAGCGATTCTAGTTCACTCAAAGACCACAAACCAAGCTTCGACGATGTTCAGCCAAGACGTCCTTATGAGAAGGAACATTTGGATGTTGAGCTGAAGCTTGTTGGAGAATATGAGCTTCGGCACAAGAGGGACTTGTGGAGGGTCCAGTATGCTGTGAGCCGCATCTGTAATGCTGCTAGGGAACTTCTTACTCTGGACAAGAAAAATCCTCGCCTTTTGTCTTACGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

122

Amino Acids

14.12

Weight (kDa)

6.82

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	199
AciI	CCGC	1 cut(s)	298
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	119
AcuI	CTGAAG	2 cut(s)	121, 251
AcyI	GRCGYC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	72
AhdI	GACNNNNNGTC	1 cut(s)	102
AjuI	GAANNNNNNNTTGG	4 cut(s)	75, 107, 200, 232
AluBI	AGCT	6 cut(s)	9, 54, 174, 229, 235, 253
AluI	AGCT	6 cut(s)	9, 54, 174, 229, 235, 253
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	311
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	280
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	298
BccI	CCATC	1 cut(s)	53
BfaI	CTAG	2 cut(s)	147, 315
BisI	GCNGC	2 cut(s)	298, 312
BlsI	GCNGC	2 cut(s)	299, 313
Bme18I	GGWCC	1 cut(s)	280
BmeRI	GACNNNNNGTC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	280
BmiI	GGNNCC	1 cut(s)	281
BmsI	GCATC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	70
BsaHI	GRCGYC	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	17
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseMI	GCAATG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	1 cut(s)	5
BslFI	GGGAC	3 cut(s)	28, 109, 281
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmFI	GGGAC	3 cut(s)	28, 109, 281
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	1 cut(s)	298
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	281
BsrDI	GCAATG	1 cut(s)	17
BsrI	ACTGG	1 cut(s)	283
BssNI	GRCGYC	1 cut(s)	196
BstACI	GRCGYC	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	7
BstF5I	GGATG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	298
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	226
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	280
CviJI	RGCY	9 cut(s)	5, 9, 54, 174, 190, 229, 235, 253, 297
CviKI_1	RGCY	9 cut(s)	5, 9, 54, 174, 190, 229, 235, 253, 297
DriI	GACNNNNNGTC	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	3
Eam1105I	GACNNNNNGTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	280
Eco57I	CTGAAG	2 cut(s)	121, 251
FaiI	YATR	5 cut(s)	12, 39, 204, 249, 288
FalI	AAGNNNNNCTT	4 cut(s)	184, 216, 254, 286
FaqI	GGGAC	3 cut(s)	28, 109, 281
Fnu4HI	GCNGC	2 cut(s)	298, 312
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	2 cut(s)	298, 312
FspBI	CTAG	2 cut(s)	147, 315
GluI	GCNGC	2 cut(s)	298, 312
HaeIII	GGCC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	196
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
HindIII	AAGCTT	2 cut(s)	172, 233
HinfI	GANTC	2 cut(s)	30, 143
HpaI	GTTAAC	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	88, 152
Hpy188III	TCNNGA	2 cut(s)	49, 332
Hpy8I	GTNNAC	2 cut(s)	88, 152
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	1 cut(s)	202
HpyCH4IV	ACGT	2 cut(s)	196, 363
HpySE526I	ACGT	2 cut(s)	196, 363
Hsp92I	GRCGYC	1 cut(s)	196
KspAI	GTTAAC	1 cut(s)	88
LpnPI	CCDG	4 cut(s)	19, 84, 296, 317
Lsp1109I	GCAGC	1 cut(s)	298
LweI	GCATC	1 cut(s)	309
MaeI	CTAG	2 cut(s)	147, 315
MaeII	ACGT	2 cut(s)	196, 363
MfeI	CAATTG	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	34, 119, 125
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	7, 220
MnlI	CCTC	3 cut(s)	258, 270, 357
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	87
MslI	CAYNNNNRTG	1 cut(s)	219
Msp20I	TGGCCA	1 cut(s)	5
MunI	CAATTG	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	30, 143
PkrI	GCNGC	2 cut(s)	299, 313
PspN4I	GGNNCC	1 cut(s)	281
PspPI	GGNCC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	298, 312
Sau96I	GGNCC	1 cut(s)	280
SetI	ASST	9 cut(s)	11, 56, 103, 176, 199, 231, 237, 255, 366
SfaNI	GCATC	1 cut(s)	309
SinI	GGWCC	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	34, 119, 125
SsiI	CCGC	1 cut(s)	298
SspMI	CTAG	2 cut(s)	147, 315
TaiI	ACGT	2 cut(s)	199, 366
TaqI	TCGA	1 cut(s)	177
TasI	AATT	3 cut(s)	34, 119, 125
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	30, 143
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TseI	GCWGC	1 cut(s)	311
TspDTI	ATGAA	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	280
XapI	RAATTY	1 cut(s)	119
XspI	CTAG	2 cut(s)	147, 315
ZraI	GACGTC	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.