Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

29430736 .. 29432000

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG241300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTTTGGAAGTTGGAGGCCTCTGTTTGGAATAACTTGCAGGAAGTTTTCCTCAAAATATCTTATGGGAATGTGTACTATTCTGTTGGTATTTCAAGGGAATGTGAAGTTAACATTGGGACAGTTCACTCAAAGACCACAAACCAAGCTTCGACGATGTTCAGTGATGAGACAATGTTCATGTTTAGAGAAGCCAAGACGTCCTTATGAGAAGGAACATTTGGATGTTGAGCTGAAGCTTGTTGGAGAATATGAGCTTCGGCGCAAGAGGGACTTGTGGAGGGTCCAGTATGCTGTGAGCCGCATCTGTAATGCTGCTAGGGAACTTCTTACTCTGGACAAGAAAAATCCTCGCCGTATCTTTAGACCCAGTTGTGGTTATGTTTTATTTTGTTTAATGTGCTTATGGGAGGTTGTCCTAATTGGAAAAAGTGTTGTGGTTGTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

149

Amino Acids

17.58

Weight (kDa)

9.97

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	202
AciI	CCGC	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	199
AfaI	GTAC	2 cut(s)	76, 444
AfiI	CCNNNNNNNGG	2 cut(s)	26, 374
AgsI	TTSAA	1 cut(s)	95
AjuI	GAANNNNNNNTTGG	4 cut(s)	98, 130, 203, 235
AluBI	AGCT	4 cut(s)	148, 232, 238, 256
AluI	AGCT	4 cut(s)	148, 232, 238, 256
Alw26I	GTCTC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	314
AspLEI	GCGC	1 cut(s)	264
AspS9I	GGNCC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	283
BbvI	GCAGC	1 cut(s)	301
BceAI	ACGGC	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	163
BfaI	CTAG	1 cut(s)	318
BisI	GCNGC	2 cut(s)	301, 315
BlsI	GCNGC	2 cut(s)	302, 316
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	284
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	1 cut(s)	312
BmuI	ACTGGG	1 cut(s)	363
BsaHI	GRCGYC	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 374
Bse1I	ACTGG	2 cut(s)	286, 369
BseGI	GGATG	1 cut(s)	229
BseLI	CCNNNNNNNGG	2 cut(s)	26, 374
BseNI	ACTGG	2 cut(s)	286, 369
BseXI	GCAGC	1 cut(s)	301
BshFI	GGCC	1 cut(s)	19
BslFI	GGGAC	2 cut(s)	132, 284
BslI	CCNNNNNNNGG	2 cut(s)	26, 374
BsmAI	GTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	132, 284
BsnI	GGCC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	301
BspANI	GGCC	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	286, 369
BssNI	GRCGYC	1 cut(s)	199
Bst4CI	ACNGT	1 cut(s)	123
BstACI	GRCGYC	1 cut(s)	199
BstF5I	GGATG	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	264
BstMAI	GTCTC	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	19
BtsCI	GGATG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	168
CfoI	GCGC	1 cut(s)	264
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	75, 443
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	7 cut(s)	19, 148, 193, 232, 238, 256, 300
CviKI_1	RGCY	7 cut(s)	19, 148, 193, 232, 238, 256, 300
CviQI	GTAC	2 cut(s)	75, 443
Eco147I	AGGCCT	1 cut(s)	19
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	254
FaeI	CATG	1 cut(s)	183
FaiI	YATR	8 cut(s)	65, 181, 207, 252, 291, 381, 406, 448
FalI	AAGNNNNNCTT	4 cut(s)	187, 219, 257, 289
FaqI	GGGAC	2 cut(s)	132, 284
FatI	CATG	1 cut(s)	179
Fnu4HI	GCNGC	2 cut(s)	301, 315
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	301, 315
FspBI	CTAG	1 cut(s)	318
GlaI	GCGC	1 cut(s)	263
GluI	GCNGC	2 cut(s)	301, 315
HaeIII	GGCC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	264
Hin1I	GRCGYC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	262
HinP1I	GCGC	1 cut(s)	262
HincII	GTYRAC	1 cut(s)	111
HindII	GTYRAC	1 cut(s)	111
HindIII	AAGCTT	2 cut(s)	146, 236
HpaI	GTTAAC	1 cut(s)	111
Hpy166II	GTNNAC	3 cut(s)	75, 111, 126
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	3 cut(s)	75, 111, 126
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	1 cut(s)	123
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	39
HpySE526I	ACGT	1 cut(s)	199
Hsp92I	GRCGYC	1 cut(s)	199
Hsp92II	CATG	1 cut(s)	183
HspAI	GCGC	1 cut(s)	262
KspAI	GTTAAC	1 cut(s)	111
LpnPI	CCDG	4 cut(s)	25, 299, 320, 382
Lsp1109I	GCAGC	1 cut(s)	301
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	1 cut(s)	318
MaeII	ACGT	1 cut(s)	199
MluCI	AATT	1 cut(s)	420
MmeI	TCCRAC	1 cut(s)	223
MnlI	CCTC	7 cut(s)	9, 30, 61, 261, 273, 360, 403
MseI	TTAA	2 cut(s)	110, 395
MslI	CAYNNNNRTG	1 cut(s)	222
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	1 cut(s)	284
PceI	AGGCCT	1 cut(s)	19
PkrI	GCNGC	2 cut(s)	302, 316
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	283
RsaI	GTAC	2 cut(s)	76, 444
RsaNI	GTAC	2 cut(s)	75, 443
RseI	CAYNNNNRTG	1 cut(s)	222
SaqAI	TTAA	2 cut(s)	110, 395
SatI	GCNGC	2 cut(s)	301, 315
Sau96I	GGNCC	1 cut(s)	283
SetI	ASST	6 cut(s)	150, 202, 234, 240, 258, 414
SfaNI	GCATC	1 cut(s)	312
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	1 cut(s)	420
SseBI	AGGCCT	1 cut(s)	19
SsiI	CCGC	1 cut(s)	301
SspMI	CTAG	1 cut(s)	318
StuI	AGGCCT	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	123
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	1 cut(s)	151
TasI	AATT	1 cut(s)	420
TatI	WGTACW	2 cut(s)	74, 442
TauI	GCSGC	1 cut(s)	303
Tru1I	TTAA	2 cut(s)	110, 395
Tru9I	TTAA	2 cut(s)	110, 395
TscAI	CASTG	1 cut(s)	168
TseI	GCWGC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	168
TspRI	CASTG	1 cut(s)	168
VpaK11BI	GGWCC	1 cut(s)	283
XspI	CTAG	1 cut(s)	318
ZraI	GACGTC	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.