Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004248.1

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

25233 .. 34619

Gene Structure 9387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004248.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

atgcaattcgtggatatggagataatgaaaatccagatggtctcggaggagatcagccatcgctcccggagcagagcacctagtcactcctctgctatctcctcaatcctcgacaagctcaagaatgtagagaagccaagacgtccttatgagaaggaacatttggatgttgagctgaagcttgttggagaatatgggcttcggcgcaagagggacttgtggagggtccagtatgctttgagccgcatcagtaatgctgctagggaacttcttactccggagaagaaaaatcctcgccttgtctttagacccagttgtgatatttttcgcccctttgtgggatataaagaagtgaggcttgtgatcaaagagtccaaacttcgtggtggtgatccccttatcctttgttttgtggattttgtaaatccagcctgtgctgcaactgccatgagtgctttgcaaggttataaaatggatgaacacaaccccgattctaactacttgcggctgcagttttctcgattcccaggtccaagatctggacatggaacccataatatttttcgcccctttgtgggatataaagaagtgaggcttgtgatcaaagagtccaaacttcgtggtggtgatccccttatcctttgttttgtggattttgtaaatccagcctgtgctgcaactgccatgagtgctttgcaaggttataaaatggatgaacacaaccccgattctaactacttgcggctgcagttttctcgattcccaggtccaaggtctggacatggaacccgtagtaagagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

267

Amino Acids

30.63

Weight (kDa)

9.8

Isoelectric Point (pI)

59.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	468, 705
AatII	GACGTC	1 cut(s)	145
AccB7I	CCANNNNNTGG	2 cut(s)	539, 776
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	3 cut(s)	244, 505, 742
AclWI	GGATC	2 cut(s)	386, 623
AcuI	CTGAAG	1 cut(s)	197
AcyI	GRCGYC	1 cut(s)	142
AfiI	CCNNNNNNNGG	6 cut(s)	337, 338, 539, 574, 575, 776
AjnI	CCWGG	2 cut(s)	526, 763
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AluBI	AGCT	3 cut(s)	118, 175, 181
AluI	AGCT	3 cut(s)	118, 175, 181
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	2 cut(s)	386, 623
Aor13HI	TCCGGA	1 cut(s)	277
ApeKI	GCWGC	5 cut(s)	257, 437, 508, 674, 745
AspLEI	GCGC	1 cut(s)	207
AspS9I	GGNCC	3 cut(s)	226, 530, 767
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	401, 638
AvaII	GGWCC	3 cut(s)	226, 530, 767
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	5 cut(s)	244, 424, 495, 661, 732
BccI	CCATC	2 cut(s)	31, 66
BcgI	CGANNNNNNTGC	4 cut(s)	500, 534, 737, 771
BciT130I	CCWGG	2 cut(s)	528, 765
BclI	TGATCA	2 cut(s)	363, 600
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	2 cut(s)	81, 261
BfmI	CTRYAG	2 cut(s)	509, 746
BglII	AGATCT	1 cut(s)	536
BisI	GCNGC	8 cut(s)	244, 258, 438, 506, 509, 675, 743, 746
BlsI	GCNGC	8 cut(s)	245, 259, 439, 507, 510, 676, 744, 747
Bme1390I	CCNGG	3 cut(s)	67, 528, 765
Bme18I	GGWCC	3 cut(s)	226, 530, 767
BmgT120I	GGNCC	3 cut(s)	226, 530, 767
BmiI	GGNNCC	3 cut(s)	227, 550, 787
BmrFI	CCNGG	3 cut(s)	67, 528, 765
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	255
BmuI	ACTGGG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	67
BsaHI	GRCGYC	1 cut(s)	142
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	3 cut(s)	526, 763, 770
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	6 cut(s)	337, 338, 539, 574, 575, 776
Bse1I	ACTGG	2 cut(s)	229, 312
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	2 cut(s)	528, 765
BseDI	CCNNGG	3 cut(s)	526, 763, 770
BseGI	GGATG	3 cut(s)	172, 481, 718
BseLI	CCNNNNNNNGG	6 cut(s)	337, 338, 539, 574, 575, 776
BseNI	ACTGG	2 cut(s)	229, 312
BseRI	GAGGAG	3 cut(s)	62, 79, 91
BseXI	GCAGC	5 cut(s)	244, 424, 495, 661, 732
BsiHKAI	GWGCWC	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	67, 278
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	6 cut(s)	337, 338, 539, 574, 575, 776
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	227
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	6 cut(s)	51, 363, 391, 536, 600, 628
BspACI	CCGC	3 cut(s)	244, 505, 742
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	227, 550, 787
BspMAI	CTGCAG	2 cut(s)	513, 750
BspPI	GGATC	2 cut(s)	386, 623
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	229, 312
BssECI	CCNNGG	3 cut(s)	526, 763, 770
BssMI	GATC	6 cut(s)	51, 363, 391, 536, 600, 628
BssNI	GRCGYC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	770
Bst2UI	CCWGG	2 cut(s)	528, 765
BstACI	GRCGYC	1 cut(s)	142
BstF5I	GGATG	3 cut(s)	172, 481, 718
BstHHI	GCGC	1 cut(s)	207
BstKTI	GATC	6 cut(s)	54, 366, 394, 539, 603, 631
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	6 cut(s)	51, 363, 391, 536, 600, 628
BstMWI	GCNNNNNNNGC	7 cut(s)	69, 437, 443, 452, 674, 680, 689
BstNI	CCWGG	2 cut(s)	528, 765
BstSCI	CCNGG	3 cut(s)	65, 526, 763
BstSFI	CTRYAG	2 cut(s)	509, 746
BstV1I	GCAGC	5 cut(s)	244, 424, 495, 661, 732
BstX2I	RGATCY	1 cut(s)	536
BstYI	RGATCY	1 cut(s)	536
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	3 cut(s)	172, 481, 718
CfoI	GCGC	1 cut(s)	207
Cfr13I	GGNCC	3 cut(s)	226, 530, 767
CspCI	CAANNNNNGTGG	4 cut(s)	364, 399, 601, 636
CviAII	CATG	4 cut(s)	448, 545, 685, 782
DpnI	GATC	6 cut(s)	53, 365, 393, 538, 602, 630
DpnII	GATC	6 cut(s)	51, 363, 391, 536, 600, 628
Eco130I	CCWWGG	1 cut(s)	770
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	3 cut(s)	226, 530, 767
Eco57I	CTGAAG	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	526, 763
EcoT14I	CCWWGG	1 cut(s)	770
ErhI	CCWWGG	1 cut(s)	770
FaeI	CATG	4 cut(s)	451, 548, 688, 785
FalI	AAGNNNNNCTT	8 cut(s)	130, 162, 200, 232, 342, 374, 579, 611
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	4 cut(s)	447, 544, 684, 781
FbaI	TGATCA	2 cut(s)	363, 600
Fnu4HI	GCNGC	8 cut(s)	244, 258, 438, 506, 509, 675, 743, 746
FokI	GGATG	3 cut(s)	179, 488, 725
Fsp4HI	GCNGC	8 cut(s)	244, 258, 438, 506, 509, 675, 743, 746
FspBI	CTAG	2 cut(s)	81, 261
GlaI	GCGC	1 cut(s)	206
GluI	GCNGC	8 cut(s)	244, 258, 438, 506, 509, 675, 743, 746
HapII	CCGG	2 cut(s)	67, 278
HhaI	GCGC	1 cut(s)	207
Hin1I	GRCGYC	1 cut(s)	142
Hin1II	CATG	4 cut(s)	451, 548, 688, 785
Hin6I	GCGC	1 cut(s)	205
HinP1I	GCGC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	179
HinfI	GANTC	6 cut(s)	371, 491, 522, 608, 728, 759
HpaII	CCGG	2 cut(s)	67, 278
HphI	GGTGA	2 cut(s)	401, 638
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	7 cut(s)	34, 121, 278, 519, 540, 756, 777
HpyAV	CCTTC	1 cut(s)	148
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	7 cut(s)	4, 440, 460, 511, 677, 697, 748
HpyF10VI	GCNNNNNNNGC	7 cut(s)	69, 437, 443, 452, 674, 680, 689
HpySE526I	ACGT	1 cut(s)	142
Hsp92I	GRCGYC	1 cut(s)	142
Hsp92II	CATG	4 cut(s)	451, 548, 688, 785
HspAI	GCGC	1 cut(s)	205
Kpn2I	TCCGGA	1 cut(s)	277
Ksp22I	TGATCA	2 cut(s)	363, 600
Kzo9I	GATC	6 cut(s)	51, 363, 391, 536, 600, 628
LmnI	GCTCC	2 cut(s)	68, 69
Lsp1109I	GCAGC	5 cut(s)	244, 424, 495, 661, 732
LweI	GCATC	1 cut(s)	255
MaeI	CTAG	2 cut(s)	81, 261
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	6 cut(s)	53, 365, 393, 538, 602, 630
MboI	GATC	6 cut(s)	51, 363, 391, 536, 600, 628
MboII	GAAGA	1 cut(s)	295
MflI	RGATCY	1 cut(s)	536
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	380, 617
MmeI	TCCRAC	1 cut(s)	166
MnlI	CCTC	9 cut(s)	40, 100, 112, 119, 204, 216, 303, 348, 585
MroI	TCCGGA	1 cut(s)	277
MslI	CAYNNNNRTG	1 cut(s)	165
MspI	CCGG	2 cut(s)	67, 278
MspR9I	CCNGG	3 cut(s)	67, 528, 765
MvaI	CCWGG	2 cut(s)	528, 765
MwoI	GCNNNNNNNGC	7 cut(s)	69, 437, 443, 452, 674, 680, 689
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	6 cut(s)	51, 363, 391, 536, 600, 628
NlaIII	CATG	4 cut(s)	451, 548, 688, 785
NlaIV	GGNNCC	3 cut(s)	227, 550, 787
NmuCI	GTSAC	1 cut(s)	83
PfeI	GAWTC	4 cut(s)	491, 522, 728, 759
PflMI	CCANNNNNTGG	2 cut(s)	539, 776
PfoI	TCCNGGA	1 cut(s)	65
PkrI	GCNGC	8 cut(s)	245, 259, 439, 507, 510, 676, 744, 747
PleI	GAGTC	2 cut(s)	379, 616
PpsI	GAGTC	2 cut(s)	379, 616
PsiI	TTATAA	2 cut(s)	468, 705
Psp6I	CCWGG	2 cut(s)	526, 763
PspGI	CCWGG	2 cut(s)	526, 763
PspN4I	GGNNCC	3 cut(s)	227, 550, 787
PspPI	GGNCC	3 cut(s)	226, 530, 767
PstI	CTGCAG	2 cut(s)	513, 750
PsuI	RGATCY	1 cut(s)	536
RseI	CAYNNNNRTG	1 cut(s)	165
SatI	GCNGC	8 cut(s)	244, 258, 438, 506, 509, 675, 743, 746
Sau3AI	GATC	6 cut(s)	51, 363, 391, 536, 600, 628
Sau96I	GGNCC	3 cut(s)	226, 530, 767
SchI	GAGTC	2 cut(s)	380, 617
ScrFI	CCNGG	3 cut(s)	67, 528, 765
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	2 cut(s)	509, 746
SinI	GGWCC	3 cut(s)	226, 530, 767
SmiMI	CAYNNNNRTG	1 cut(s)	165
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	3 cut(s)	244, 505, 742
SspI	AATATT	1 cut(s)	559
SspMI	CTAG	2 cut(s)	81, 261
StyD4I	CCNGG	3 cut(s)	65, 526, 763
StyI	CCWWGG	1 cut(s)	770
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	3 cut(s)	111, 520, 757
TasI	AATT	1 cut(s)	5
TauI	GCSGC	3 cut(s)	246, 508, 745
TfiI	GAWTC	4 cut(s)	491, 522, 728, 759
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	5 cut(s)	257, 437, 508, 674, 745
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	41, 492, 729
Van91I	CCANNNNNTGG	2 cut(s)	539, 776
VpaK11BI	GGWCC	3 cut(s)	226, 530, 767
XspI	CTAG	2 cut(s)	81, 261
ZraI	GACGTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.