Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

56730091 .. 56732045

Gene Structure 1955 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG378700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGCTCCGGCAAAAACTCCAAAGAGAGGTTCATTGAATTAGGCATAAATTTTTGTGCAGATAAGGTGTTTGATGAGATGCTTGAGAGGTCAAGTGACTCTGCATCTACTTGCAGCCTAGTTGAACCTGGTAGTGCTGCGAAAAGAGTGGCTGGTGCTAATTCAAATTCAACAATGATGAGACAATGTTCATGTTTAGAGAAGCCAAGACGTCCTTATGAGAAGGAACATTTGGATGTTGAGCTGAAGCTTGTTGGAGAATATGGGCTTCGGCGCAAGAGGGACTTGTGGAGGGTCCAGTATGCTTTGAGCCGCATCCGTAATGCTGCTAGGGAACTTCTTACTCTGGACAAGAAAAATCCTCGCCGTATCTTTAGACCCAGTTGTGGTTATGTTTTATTTTGTTTAATGTGCTTATGGGAGGTTGTCCTAATTGGAAAAAAAGTGTTGTGGTTGTACTTTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

155

Amino Acids

17.93

Weight (kDa)

9.35

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	214
AciI	CCGC	1 cut(s)	313
AcsI	RAATTY	2 cut(s)	49, 166
AcuI	CTGAAG	1 cut(s)	266
AcyI	GRCGYC	1 cut(s)	211
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	2 cut(s)	27, 386
AgsI	TTSAA	4 cut(s)	38, 125, 165, 171
AjnI	CCWGG	1 cut(s)	127
AjuI	GAANNNNNNNTTGG	4 cut(s)	14, 46, 215, 247
AluBI	AGCT	3 cut(s)	6, 244, 250
AluI	AGCT	3 cut(s)	6, 244, 250
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	175
ApeKI	GCWGC	3 cut(s)	114, 137, 326
ApoI	RAATTY	2 cut(s)	49, 166
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	1 cut(s)	295
AvaII	GGWCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	3 cut(s)	124, 126, 313
BceAI	ACGGC	1 cut(s)	351
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	2 cut(s)	119, 330
BisI	GCNGC	4 cut(s)	115, 138, 313, 327
BlsI	GCNGC	4 cut(s)	116, 139, 314, 328
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	129
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	3 cut(s)	69, 113, 324
BmuI	ACTGGG	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	211
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 386
Bse1I	ACTGG	2 cut(s)	298, 381
BseBI	CCWGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	241, 315
BseLI	CCNNNNNNNGG	2 cut(s)	27, 386
BseNI	ACTGG	2 cut(s)	298, 381
BseXI	GCAGC	3 cut(s)	124, 126, 313
BsgI	GTGCAG	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	2 cut(s)	27, 386
BsmAI	GTCTC	1 cut(s)	175
BsmFI	GGGAC	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	296
BsrI	ACTGG	2 cut(s)	298, 381
BssNI	GRCGYC	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	241, 315
BstHHI	GCGC	1 cut(s)	276
BstMAI	GTCTC	1 cut(s)	175
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	124, 126, 313
BtsCI	GGATG	2 cut(s)	241, 315
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	1 cut(s)	295
CsiI	ACCWGGT	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	1 cut(s)	192
CviJI	RGCY	8 cut(s)	6, 117, 152, 205, 244, 250, 268, 312
CviKI_1	RGCY	8 cut(s)	6, 117, 152, 205, 244, 250, 268, 312
CviQI	GTAC	1 cut(s)	457
Ecl136II	GAGCTC	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	6
EcoRII	CCWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	8
FaeI	CATG	1 cut(s)	195
FaiI	YATR	7 cut(s)	47, 193, 219, 264, 303, 393, 418
FalI	AAGNNNNNCTT	4 cut(s)	199, 231, 269, 301
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	191
Fnu4HI	GCNGC	4 cut(s)	115, 138, 313, 327
FokI	GGATG	2 cut(s)	248, 302
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	115, 138, 313, 327
FspBI	CTAG	2 cut(s)	119, 330
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	4 cut(s)	115, 138, 313, 327
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	1 cut(s)	276
Hin1I	GRCGYC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	195
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	347
HpyAV	CCTTC	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	3 cut(s)	59, 104, 114
HpySE526I	ACGT	1 cut(s)	211
Hsp92I	GRCGYC	1 cut(s)	211
Hsp92II	CATG	1 cut(s)	195
HspAI	GCGC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	11
LpnPI	CCDG	7 cut(s)	22, 114, 138, 141, 311, 332, 394
Lsp1109I	GCAGC	3 cut(s)	124, 126, 313
LweI	GCATC	3 cut(s)	69, 113, 324
MabI	ACCWGGT	1 cut(s)	127
MaeI	CTAG	2 cut(s)	119, 330
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	5 cut(s)	38, 49, 160, 166, 432
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	6 cut(s)	21, 81, 273, 285, 372, 415
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	234
MspI	CCGG	1 cut(s)	9
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NlaIII	CATG	1 cut(s)	195
NlaIV	GGNNCC	1 cut(s)	296
NmuCI	GTSAC	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	116, 139, 314, 328
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	8
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	1 cut(s)	295
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
RseI	CAYNNNNRTG	1 cut(s)	234
SacI	GAGCTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	4 cut(s)	115, 138, 313, 327
Sau96I	GGNCC	1 cut(s)	295
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	9 cut(s)	8, 32, 69, 92, 130, 214, 246, 252, 426
SexAI	ACCWGGT	1 cut(s)	127
SfaNI	GCATC	3 cut(s)	69, 113, 324
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	5 cut(s)	38, 49, 160, 166, 432
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	2 cut(s)	119, 330
SstI	GAGCTC	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	127
TaiI	ACGT	1 cut(s)	214
TasI	AATT	5 cut(s)	38, 49, 160, 166, 432
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	315
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	3 cut(s)	114, 137, 326
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	22, 180
TspGWI	ACGGA	1 cut(s)	308
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	2 cut(s)	49, 166
XspI	CTAG	2 cut(s)	119, 330
ZraI	GACGTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.