Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

37231085 .. 37233499

Gene Structure 2415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGCGACTCCGCTACGCTCCGTCGCTTCGTTTCTCGGTCTCGGTGCTGCCGTGGGAAAGTAACGTGAGGATCAGGTCAAGGAGGGGATCGTTAGCTATTCTCGTTGGTATGTCAAGGGAATGTGAAGTTAACATTGGGACAGTGATGAGACAATGTTCATTTTTAGAGAAGCCAAGACGTCCTTATGAGAAGGAACATTTGGATGTTGAGCTGAAGCTTGTTGGAGAATATGGGCTTCGGCGCAAGAGGGACTTGTGGAGGGTCCAAGATGCTTTGAGCCGCATCCGTAATGCTGCTAGGGAACTTCTTACTTTGGACAAGAAAATCCTCGCCGTATCTTTAGACCCAGTTGTGGTTATGTTTTATTTTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0042788 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071944 GO:0080090 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

124

Amino Acids

14.56

Weight (kDa)

10.31

Isoelectric Point (pI)

61.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	181
AciI	CCGC	2 cut(s)	10, 280
AclWI	GGATC	2 cut(s)	77, 94
AcuI	CTGAAG	1 cut(s)	233
AcyI	GRCGYC	1 cut(s)	178
AfiI	CCNNNNNNNGG	1 cut(s)	352
AjuI	GAANNNNNNNTTGG	4 cut(s)	117, 149, 182, 214
AluBI	AGCT	3 cut(s)	95, 211, 217
AluI	AGCT	3 cut(s)	95, 211, 217
Alw26I	GTCTC	2 cut(s)	43, 142
AlwI	GGATC	2 cut(s)	77, 94
ApeKI	GCWGC	2 cut(s)	46, 293
AspLEI	GCGC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	262
AvaII	GGWCC	1 cut(s)	262
BbvI	GCAGC	2 cut(s)	33, 280
BceAI	ACGGC	2 cut(s)	34, 317
BcoDI	GTCTC	2 cut(s)	43, 142
BfaI	CTAG	1 cut(s)	297
BisI	GCNGC	3 cut(s)	47, 280, 294
BlsI	GCNGC	3 cut(s)	48, 281, 295
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	341
BmsI	GCATC	2 cut(s)	259, 291
BmuI	ACTGGG	1 cut(s)	341
BsaHI	GRCGYC	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse1I	ACTGG	1 cut(s)	347
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	2 cut(s)	208, 282
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseNI	ACTGG	1 cut(s)	347
BseXI	GCAGC	2 cut(s)	33, 280
BslFI	GGGAC	2 cut(s)	151, 263
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	2 cut(s)	43, 142
BsmFI	GGGAC	2 cut(s)	151, 263
Bso31I	GGTCTC	1 cut(s)	43
Bsp143I	GATC	2 cut(s)	69, 86
BspACI	CCGC	2 cut(s)	10, 280
BspLI	GGNNCC	1 cut(s)	263
BspPI	GGATC	2 cut(s)	77, 94
BspTNI	GGTCTC	1 cut(s)	43
BsrI	ACTGG	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	69, 86
BssNI	GRCGYC	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	142
BstACI	GRCGYC	1 cut(s)	178
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	2 cut(s)	208, 282
BstHHI	GCGC	1 cut(s)	243
BstKTI	GATC	2 cut(s)	72, 89
BstMAI	GTCTC	2 cut(s)	43, 142
BstMBI	GATC	2 cut(s)	69, 86
BstV1I	GCAGC	2 cut(s)	33, 280
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	2 cut(s)	208, 282
BtsIMutI	CAGTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	243
Cfr13I	GGNCC	1 cut(s)	262
CviJI	RGCY	6 cut(s)	95, 172, 211, 217, 235, 279
CviKI_1	RGCY	6 cut(s)	95, 172, 211, 217, 235, 279
DpnI	GATC	2 cut(s)	71, 88
DpnII	GATC	2 cut(s)	69, 86
Eco31I	GGTCTC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	233
FaiI	YATR	4 cut(s)	110, 186, 231, 359
FalI	AAGNNNNNCTT	4 cut(s)	166, 198, 236, 268
FaqI	GGGAC	2 cut(s)	151, 263
Fnu4HI	GCNGC	3 cut(s)	47, 280, 294
FokI	GGATG	2 cut(s)	215, 269
Fsp4HI	GCNGC	3 cut(s)	47, 280, 294
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	242
GluI	GCNGC	3 cut(s)	47, 280, 294
HhaI	GCGC	1 cut(s)	243
Hin1I	GRCGYC	1 cut(s)	178
Hin6I	GCGC	1 cut(s)	241
HinP1I	GCGC	1 cut(s)	241
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	1 cut(s)	6
HpaI	GTTAAC	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	130
Hpy8I	GTNNAC	1 cut(s)	130
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	63, 178
HpySE526I	ACGT	2 cut(s)	63, 178
Hsp92I	GRCGYC	1 cut(s)	178
HspAI	GCGC	1 cut(s)	241
KspAI	GTTAAC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	69, 86
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	2 cut(s)	58, 360
Lsp1109I	GCAGC	2 cut(s)	33, 280
LweI	GCATC	2 cut(s)	259, 291
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	2 cut(s)	63, 178
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	2 cut(s)	71, 88
MboI	GATC	2 cut(s)	69, 86
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	5 cut(s)	60, 75, 240, 252, 338
MseI	TTAA	2 cut(s)	129, 373
MslI	CAYNNNNRTG	1 cut(s)	201
NdeII	GATC	2 cut(s)	69, 86
NlaIV	GGNNCC	1 cut(s)	263
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PkrI	GCNGC	3 cut(s)	48, 281, 295
PspN4I	GGNNCC	1 cut(s)	263
PspPI	GGNCC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	201
SaqAI	TTAA	2 cut(s)	129, 373
SatI	GCNGC	3 cut(s)	47, 280, 294
Sau3AI	GATC	2 cut(s)	69, 86
Sau96I	GGNCC	1 cut(s)	262
SetI	ASST	6 cut(s)	66, 77, 97, 181, 213, 219
SfaNI	GCATC	2 cut(s)	259, 291
SinI	GGWCC	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	201
SsiI	CCGC	2 cut(s)	10, 280
SspMI	CTAG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	66, 181
TaqII	GACCGA	1 cut(s)	25
TauI	GCSGC	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	129, 373
Tru9I	TTAA	2 cut(s)	129, 373
TscAI	CASTG	1 cut(s)	147
TseI	GCWGC	2 cut(s)	46, 293
TspDTI	ATGAA	1 cut(s)	147
TspGWI	ACGGA	2 cut(s)	9, 275
TspRI	CASTG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	262
XspI	CTAG	1 cut(s)	297
ZraI	GACGTC	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.