Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

51587901 .. 51589946

Gene Structure 2046 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0368200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGCAGCAGAGCGCTCCGGCGTCGTTTCTTCCAAATAGAGGAGGACAAGACTTTGATCTCGGACGAGACGGTGGTGAGTTGGCCAAAAACGTGTCCGGTTTTGATTCTTTTTGGTTGGGCTTGAAGTCGACGGTTATTGTCGGTATCAGGCTTGCAGACGCGATCAATGGAGAGCGGTGGCCGTCGCCGGCCAAATCAAATCCCAGAGGAACGCCGACGTACGCCGACGTGCGCGAGGTCTACGACAGGTCGTTGAAGTTGGACGACGAGCTCCGCGACCTGGACGCCATGAACGCTGAGTTGACTCTGGTCCGGAACGACATCGAGGACTTGAGCACGTCGCGGATGGAGTTCGCGACTGAGTTGAGGACGATCCAAGGAGAGATTGAGAGGGCTCACTCCGACGAGTCTAAGCAAATCGAAGCCATTAGAGACGAAATTGAGACTTTGAAGCTGGAGATTGAGAAAGGAATAAAATTGAGACTCCAGATCCGAGTTCTGGAGTCGAGATCGGGTTTGGGGCGACAATTTGCAGCAGATGCAGTAGTTTCTCTTTTTTGTGGACATGGTGGTTTCCTTCTGCAGGTTCGGGTAGTTGATGTTGTCTGGGCGATGGGGTCGAAGGATGACGTCTGCTGGAGCGACATCGTTCGCTTTGGAGGCCTGGAATCGAATGGAGATGACCGTGGAGTGGGGTTGGACTTCTGGTGTTTTGACGGTGGCGGCAGGTTTGTCGGAGGTGACCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

249

Amino Acids

27.48

Weight (kDa)

4.7

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	633
Acc36I	ACCTGC	2 cut(s)	574, 717
AccBSI	CCGCTC	1 cut(s)	175
AccI	GTMKAC	2 cut(s)	128, 240
AccII	CGCG	5 cut(s)	161, 234, 276, 343, 356
AccIII	TCCGGA	1 cut(s)	312
AciI	CCGC	4 cut(s)	175, 274, 343, 723
AclWI	GGATC	2 cut(s)	367, 484
AcoI	YGGCCR	3 cut(s)	81, 179, 189
AcyI	GRCGYC	3 cut(s)	20, 285, 630
AfaI	GTAC	1 cut(s)	221
AfeI	AGCGCT	1 cut(s)	13
AfiI	CCNNNNNNNGG	5 cut(s)	38, 280, 499, 583, 691
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	124, 256, 451
AjiI	CACGTC	2 cut(s)	229, 339
AjnI	CCWGG	2 cut(s)	279, 663
AluBI	AGCT	2 cut(s)	271, 454
AluI	AGCT	2 cut(s)	271, 454
Alw21I	GWGCWC	2 cut(s)	273, 338
Alw26I	GTCTC	4 cut(s)	60, 426, 437, 475
AlwI	GGATC	2 cut(s)	367, 484
Aor13HI	TCCGGA	1 cut(s)	312
Aor51HI	AGCGCT	1 cut(s)	13
AoxI	GGCC	4 cut(s)	81, 179, 189, 661
ApeKI	GCWGC	2 cut(s)	4, 533
AspLEI	GCGC	2 cut(s)	14, 234
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	86
AvaII	GGWCC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	83
BanII	GRGCYC	2 cut(s)	273, 397
Bbv12I	GWGCWC	2 cut(s)	273, 338
BbvI	GCAGC	2 cut(s)	16, 545
BccI	CCATC	2 cut(s)	340, 607
BceAI	ACGGC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	715, 749
BciT130I	CCWGG	2 cut(s)	281, 665
BcoDI	GTCTC	4 cut(s)	60, 426, 437, 475
BfmI	CTRYAG	1 cut(s)	581
BfoI	RGCGCY	1 cut(s)	15
BfuAI	ACCTGC	2 cut(s)	574, 717
BisI	GCNGC	3 cut(s)	5, 534, 724
BlsI	GCNGC	3 cut(s)	6, 535, 725
Bme1390I	CCNGG	2 cut(s)	281, 665
Bme18I	GGWCC	1 cut(s)	310
BmgBI	CACGTC	2 cut(s)	229, 339
BmgT120I	GGNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	281, 665
BmsI	GCATC	1 cut(s)	529
BoxI	GACNNNNGTC	1 cut(s)	308
BpmI	CTGGAG	4 cut(s)	470, 476, 521, 658
BpuEI	CTTGAG	1 cut(s)	352
BsaHI	GRCGYC	3 cut(s)	20, 285, 630
BsaJI	CCNNGG	2 cut(s)	376, 685
BsaWI	WCCGGW	2 cut(s)	95, 312
Bsc4I	CCNNNNNNNGG	5 cut(s)	38, 280, 499, 583, 691
Bse118I	RCCGGY	1 cut(s)	187
BseAI	TCCGGA	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	281, 665
BseDI	CCNNGG	2 cut(s)	376, 685
BseGI	GGATG	2 cut(s)	351, 631
BseLI	CCNNNNNNNGG	5 cut(s)	38, 280, 499, 583, 691
BseMII	CTCAG	2 cut(s)	288, 351
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	2 cut(s)	16, 545
Bsh1236I	CGCG	5 cut(s)	161, 234, 276, 343, 356
BshFI	GGCC	4 cut(s)	83, 181, 191, 663
BsiHKAI	GWGCWC	2 cut(s)	273, 338
BsiSI	CCGG	4 cut(s)	17, 96, 188, 313
BsiWI	CGTACG	1 cut(s)	219
BslI	CCNNNNNNNGG	5 cut(s)	38, 280, 499, 583, 691
BsmAI	GTCTC	4 cut(s)	60, 426, 437, 475
BsmBI	CGTCTC	2 cut(s)	60, 426
BsnI	GGCC	4 cut(s)	83, 181, 191, 663
Bsp1286I	GDGCHC	3 cut(s)	273, 338, 397
Bsp13I	TCCGGA	1 cut(s)	312
Bsp143I	GATC	5 cut(s)	55, 162, 372, 489, 509
Bsp68I	TCGCGA	1 cut(s)	356
BspACI	CCGC	4 cut(s)	175, 274, 343, 723
BspANI	GGCC	4 cut(s)	83, 181, 191, 663
BspCNI	CTCAG	2 cut(s)	289, 352
BspEI	TCCGGA	1 cut(s)	312
BspFNI	CGCG	5 cut(s)	161, 234, 276, 343, 356
BspMAI	CTGCAG	1 cut(s)	585
BspMI	ACCTGC	2 cut(s)	574, 717
BspPI	GGATC	2 cut(s)	367, 484
BsrBI	CCGCTC	1 cut(s)	175
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	376, 685
BssMI	GATC	5 cut(s)	55, 162, 372, 489, 509
BssNI	GRCGYC	3 cut(s)	20, 285, 630
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	2 cut(s)	281, 665
Bst4CI	ACNGT	4 cut(s)	71, 133, 686, 719
BstACI	GRCGYC	3 cut(s)	20, 285, 630
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	153, 189
BstDEI	CTNAG	3 cut(s)	297, 360, 411
BstDSI	CCRYGG	1 cut(s)	685
BstEII	GGTNACC	1 cut(s)	740
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	351, 631
BstFNI	CGCG	5 cut(s)	161, 234, 276, 343, 356
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	2 cut(s)	14, 234
BstKTI	GATC	5 cut(s)	58, 165, 375, 492, 512
BstMAI	GTCTC	4 cut(s)	60, 426, 437, 475
BstMBI	GATC	5 cut(s)	55, 162, 372, 489, 509
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 539, 660
BstNI	CCWGG	2 cut(s)	281, 665
BstPAI	GACNNNNGTC	1 cut(s)	308
BstPI	GGTNACC	1 cut(s)	740
BstSCI	CCNGG	2 cut(s)	279, 663
BstSFI	CTRYAG	1 cut(s)	581
BstUI	CGCG	5 cut(s)	161, 234, 276, 343, 356
BstV1I	GCAGC	2 cut(s)	16, 545
BstX2I	RGATCY	1 cut(s)	489
BstYI	RGATCY	1 cut(s)	489
BsuRI	GGCC	4 cut(s)	83, 181, 191, 663
BtgI	CCRYGG	1 cut(s)	685
BtgZI	GCGATG	1 cut(s)	626
BtrI	CACGTC	2 cut(s)	229, 339
BtsCI	GGATG	2 cut(s)	351, 631
BtuMI	TCGCGA	1 cut(s)	356
BveI	ACCTGC	2 cut(s)	574, 717
Cac8I	GCNNGC	2 cut(s)	153, 189
CfoI	GCGC	2 cut(s)	14, 234
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	310
CseI	GACGC	3 cut(s)	9, 167, 293
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	2 cut(s)	289, 566
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	3 cut(s)	297, 360, 411
DpnI	GATC	5 cut(s)	57, 164, 374, 491, 511
DpnII	GATC	5 cut(s)	55, 162, 372, 489, 509
EaeI	YGGCCR	3 cut(s)	81, 179, 189
Ecl136II	GAGCTC	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	376
Eco147I	AGGCCT	1 cut(s)	663
Eco24I	GRGCYC	2 cut(s)	273, 397
Eco47I	GGWCC	1 cut(s)	310
Eco47III	AGCGCT	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	271
Eco91I	GGTNACC	1 cut(s)	740
EcoICRI	GAGCTC	1 cut(s)	271
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	740
EcoRII	CCWGG	2 cut(s)	279, 663
EcoT14I	CCWWGG	1 cut(s)	376
EcoT38I	GRGCYC	2 cut(s)	273, 397
ErhI	CCWWGG	1 cut(s)	376
Esp3I	CGTCTC	2 cut(s)	60, 426
FaeI	CATG	2 cut(s)	292, 569
FaiI	YATR	2 cut(s)	290, 567
FatI	CATG	2 cut(s)	288, 565
FblI	GTMKAC	2 cut(s)	128, 240
Fnu4HI	GCNGC	3 cut(s)	5, 534, 724
FokI	GGATG	2 cut(s)	358, 638
FriOI	GRGCYC	2 cut(s)	273, 397
Fsp4HI	GCNGC	3 cut(s)	5, 534, 724
GlaI	GCGC	2 cut(s)	13, 233
GluI	GCNGC	3 cut(s)	5, 534, 724
GsuI	CTGGAG	4 cut(s)	470, 476, 521, 658
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	4 cut(s)	83, 181, 191, 663
HapII	CCGG	4 cut(s)	17, 96, 188, 313
HgaI	GACGC	3 cut(s)	9, 167, 293
HhaI	GCGC	2 cut(s)	14, 234
Hin1I	GRCGYC	3 cut(s)	20, 285, 630
Hin1II	CATG	2 cut(s)	292, 569
Hin6I	GCGC	2 cut(s)	12, 232
HinP1I	GCGC	2 cut(s)	12, 232
HincII	GTYRAC	2 cut(s)	129, 303
HindII	GTYRAC	2 cut(s)	129, 303
HinfI	GANTC	6 cut(s)	104, 304, 407, 483, 503, 668
HpaII	CCGG	4 cut(s)	17, 96, 188, 313
HphI	GGTGA	1 cut(s)	86
Hpy166II	GTNNAC	4 cut(s)	129, 241, 303, 563
Hpy188I	TCNGA	4 cut(s)	62, 403, 494, 737
Hpy188III	TCNNGA	5 cut(s)	313, 355, 487, 500, 507
Hpy8I	GTNNAC	4 cut(s)	129, 241, 303, 563
Hpy99I	CGWCG	8 cut(s)	25, 133, 187, 220, 230, 269, 343, 407
HpyAV	CCTTC	2 cut(s)	587, 616
HpyCH4III	ACNGT	4 cut(s)	71, 133, 686, 719
HpyCH4IV	ACGT	5 cut(s)	90, 218, 228, 338, 630
HpyCH4V	TGCA	5 cut(s)	4, 155, 533, 542, 583
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 539, 660
HpyF3I	CTNAG	3 cut(s)	297, 360, 411
HpySE526I	ACGT	5 cut(s)	90, 218, 228, 338, 630
Hsp92I	GRCGYC	3 cut(s)	20, 285, 630
Hsp92II	CATG	2 cut(s)	292, 569
HspAI	GCGC	2 cut(s)	12, 232
Kpn2I	TCCGGA	1 cut(s)	312
KroI	GCCGGC	1 cut(s)	187
KroNI	GCCGGC	1 cut(s)	189
Kzo9I	GATC	5 cut(s)	55, 162, 372, 489, 509
LmnI	GCTCC	3 cut(s)	19, 276, 639
Lsp1109I	GCAGC	2 cut(s)	16, 545
LweI	GCATC	1 cut(s)	529
MaeII	ACGT	5 cut(s)	90, 218, 228, 338, 630
MaeIII	GTNAC	1 cut(s)	740
MalI	GATC	5 cut(s)	57, 164, 374, 491, 511
MbiI	CCGCTC	1 cut(s)	175
MboI	GATC	5 cut(s)	55, 162, 372, 489, 509
MboII	GAAGA	1 cut(s)	20
MflI	RGATCY	1 cut(s)	489
MhlI	GDGCHC	3 cut(s)	273, 338, 397
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	3 cut(s)	438, 476, 527
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	4 cut(s)	298, 416, 477, 512
MmeI	TCCRAC	4 cut(s)	240, 426, 678, 715
MnlI	CCTC	9 cut(s)	32, 35, 200, 229, 319, 360, 384, 653, 731
Mox20I	TGGCCA	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	312
MroNI	GCCGGC	1 cut(s)	187
MscI	TGGCCA	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	83
MspI	CCGG	4 cut(s)	17, 96, 188, 313
MspR9I	CCNGG	2 cut(s)	281, 665
MvaI	CCWGG	2 cut(s)	281, 665
MvnI	CGCG	5 cut(s)	161, 234, 276, 343, 356
MwoI	GCNNNNNNNGC	3 cut(s)	293, 539, 660
NaeI	GCCGGC	1 cut(s)	189
NdeII	GATC	5 cut(s)	55, 162, 372, 489, 509
NgoMIV	GCCGGC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	292, 569
NmuCI	GTSAC	1 cut(s)	740
NruI	TCGCGA	1 cut(s)	356
PceI	AGGCCT	1 cut(s)	663
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PdiI	GCCGGC	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	104, 668
Pfl23II	CGTACG	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	6, 535, 725
PleI	GAGTC	4 cut(s)	298, 415, 477, 511
PpsI	GAGTC	4 cut(s)	298, 415, 477, 511
PshAI	GACNNNNGTC	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	279, 663
PspEI	GGTNACC	1 cut(s)	740
PspGI	CCWGG	2 cut(s)	279, 663
PspLI	CGTACG	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	585
PsuI	RGATCY	1 cut(s)	489
RruI	TCGCGA	1 cut(s)	356
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
SacI	GAGCTC	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	127
SatI	GCNGC	3 cut(s)	5, 534, 724
Sau3AI	GATC	5 cut(s)	55, 162, 372, 489, 509
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	4 cut(s)	298, 416, 477, 512
ScrFI	CCNGG	2 cut(s)	281, 665
SduI	GDGCHC	3 cut(s)	273, 338, 397
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	581
SinI	GGWCC	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	3 cut(s)	438, 476, 527
SseBI	AGGCCT	1 cut(s)	663
SsiI	CCGC	4 cut(s)	175, 274, 343, 723
SstI	GAGCTC	1 cut(s)	273
StuI	AGGCCT	1 cut(s)	663
StyD4I	CCNGG	2 cut(s)	279, 663
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	4 cut(s)	71, 133, 686, 719
TaiI	ACGT	5 cut(s)	93, 221, 231, 341, 633
TaqI	TCGA	6 cut(s)	128, 324, 420, 506, 620, 671
TasI	AATT	3 cut(s)	438, 476, 527
TauI	GCSGC	1 cut(s)	726
TfiI	GAWTC	2 cut(s)	104, 668
TseFI	GTSAC	1 cut(s)	740
TseI	GCWGC	2 cut(s)	4, 533
Tsp45I	GTSAC	1 cut(s)	740
TspDTI	ATGAA	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	310
XagI	CCTNNNNNAGG	1 cut(s)	581
XmiI	GTMKAC	2 cut(s)	128, 240
ZraI	GACGTC	1 cut(s)	631

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.