Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0001270

Physical Location & Seq

Genomic Coordinates Reverse (-)

27526708 .. 27528408

Gene Structure 1701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG293300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGCAACTCGTGGATCTGGAGATAATGAAAATCCAGATGGTCTCGGAGGAGATCAGCCATCGCTCGAGGAGCAGAGCACCTCGTCACTCCTCCGCTATCTCTTCAATCCTCGACAAGCTCAAGAATGTAGCTATTCTGTTGGTATGTCAAGGGAATGTGAAGTTAACATTGGGACAGTTCACTCAAAGACCACAAACCAAGCTTCGACGATGTTCAGTGATGAGACAATGTTCATGTTTAGAGAAGCCAAGACGTCCTTATGAGAAGGAACATTTGGATGTTGAGCTGAAGCTTGTTGGAGAATATGGGCTTCGGCACAAGAGGGACTTGTGGAGGGTCCAGTATGCTTTGAGCCGCATCCGTAATGCTGCTAGGGAACTTCTTACTCTGGACAAGAAAAATCCTCGCCGTATCTTTAGACCCAGTTGTGGTTATGTTTTATTTTGTTTAATGTGCTTATGGGAGGTTGTCCTAATTGGAAAAAGTGTTGTGGTTGTACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006417 GO:0006450 GO:0008150 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0022626 GO:0022627 GO:0030054 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

167

Amino Acids

19.47

Weight (kDa)

10.04

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15200 AT5G15200 AT5G39850
fragaria_vesca	FvH4_5g15210 FvH4_6g48920
malus_domestica	MD09G1049700.v1.1 MD14G1197700.v1.1 MD17G1049900.v1.1
prunus_persica	Prupe.3G269100_v2.0.a1 Prupe.5G189800_v2.0.a1
pyrus_communis	pycom111g04070 pycom17g04480
rosa_chinensis	RchiOBHm_Chr2g0168731 RchiOBHm_Chr5g0015301 RchiOBHm_Chr6g0253821 RchiOBHm_Chr6g0256001 RchiOBHm_Chr6g0256021 RchiOBHm_Chr7g0180961
rosa_laevigata	RLG00000005221 RLG00000021805
rosa_multiflora	Rmu_sc0000084.1_g000039 Rmu_sc0002521.1_g000048 Rmu_sc0002611.1_g000002 Rmu_sc0004056.1_g000006 Rmu_sc0004248.1_g000003 Rmu_sc0006449.1_g000006 Rmu_sc0012935.1_g000005 Rmu_sc0028417.1_g000004
rosa_roxburghii	Rroxscaffold_2G00082730 Rroxscaffold_3G00272380 Rroxscaffold_5G00351620 Rroxscaffold_5G00357550
rosa_rugosa	Rorug02G0535100 Rorug05G0212100 Rorug06G0368200 Rorug06G0437900
rosa_samantha	Rh2AG378700 Rh2AG605900 Rh2BG618800 Rh2CG452500 Rh2CG586900 Rh2DG629300 Rh5AG241300 Rh5BG246300 Rh6CG218900 Rh6CG386300 Rh6DG157600 Rh7AG039400 Rh7BG038700 Rh7BG293300 Rh7CG040400 Rh7DG038800
rosa_wichuraiana	Rw2G050220 Rw5G038790 Rw7G003230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	256
AciI	CCGC	2 cut(s)	93, 355
AclWI	GGATC	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	308
AcyI	GRCGYC	1 cut(s)	253
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	105
AjuI	GAANNNNNNNTTGG	4 cut(s)	152, 184, 257, 289
AluBI	AGCT	5 cut(s)	118, 131, 202, 286, 292
AluI	AGCT	5 cut(s)	118, 131, 202, 286, 292
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	46, 217
AlwI	GGATC	1 cut(s)	21
Ama87I	CYCGRG	1 cut(s)	64
ApeKI	GCWGC	1 cut(s)	368
AspS9I	GGNCC	1 cut(s)	337
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	1 cut(s)	337
BauI	CACGAG	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	355
BccI	CCATC	2 cut(s)	31, 66
BceAI	ACGGC	1 cut(s)	393
BcoDI	GTCTC	2 cut(s)	46, 217
BfaI	CTAG	1 cut(s)	372
BisI	GCNGC	2 cut(s)	355, 369
BlsI	GCNGC	2 cut(s)	356, 370
Bme18I	GGWCC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	1 cut(s)	337
BmiI	GGNNCC	1 cut(s)	338
BmrI	ACTGGG	1 cut(s)	417
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	417
BpmI	CTGGAG	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	104
BsaHI	GRCGYC	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	428
Bse1I	ACTGG	2 cut(s)	340, 423
BseGI	GGATG	2 cut(s)	283, 357
BseLI	CCNNNNNNNGG	1 cut(s)	428
BseNI	ACTGG	2 cut(s)	340, 423
BseRI	GAGGAG	3 cut(s)	62, 79, 82
BseXI	GCAGC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	64
BslFI	GGGAC	2 cut(s)	186, 338
BslI	CCNNNNNNNGG	1 cut(s)	428
BsmAI	GTCTC	2 cut(s)	46, 217
BsmFI	GGGAC	2 cut(s)	186, 338
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	64
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	13, 51
BspACI	CCGC	2 cut(s)	93, 355
BspLI	GGNNCC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	21
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	340, 423
BssMI	GATC	2 cut(s)	13, 51
BssNI	GRCGYC	1 cut(s)	253
BssSI	CACGAG	1 cut(s)	8
Bst2BI	CACGAG	1 cut(s)	8
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	106
BstACI	GRCGYC	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	283, 357
BstKTI	GATC	2 cut(s)	16, 54
BstMAI	GTCTC	2 cut(s)	46, 217
BstMBI	GATC	2 cut(s)	13, 51
BstMWI	GCNNNNNNNGC	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	355
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	44
BtsCI	GGATG	2 cut(s)	283, 357
BtsIMutI	CAGTG	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	337
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	1 cut(s)	234
CviJI	RGCY	9 cut(s)	57, 118, 131, 202, 247, 286, 292, 310, 354
CviKI_1	RGCY	9 cut(s)	57, 118, 131, 202, 247, 286, 292, 310, 354
CviQI	GTAC	1 cut(s)	497
DpnI	GATC	2 cut(s)	15, 53
DpnII	GATC	2 cut(s)	13, 51
Eam1104I	CTCTTC	1 cut(s)	106
EarI	CTCTTC	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	337
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	64
FaeI	CATG	1 cut(s)	237
FaiI	YATR	7 cut(s)	145, 235, 261, 306, 345, 435, 460
FalI	AAGNNNNNCTT	4 cut(s)	241, 273, 311, 343
FaqI	GGGAC	2 cut(s)	186, 338
FatI	CATG	1 cut(s)	233
Fnu4HI	GCNGC	2 cut(s)	355, 369
FokI	GGATG	2 cut(s)	290, 344
Fsp4HI	GCNGC	2 cut(s)	355, 369
FspBI	CTAG	1 cut(s)	372
GluI	GCNGC	2 cut(s)	355, 369
GsuI	CTGGAG	1 cut(s)	38
Hin1I	GRCGYC	1 cut(s)	253
Hin1II	CATG	1 cut(s)	237
HincII	GTYRAC	1 cut(s)	165
HindII	GTYRAC	1 cut(s)	165
HindIII	AAGCTT	2 cut(s)	200, 290
HpaI	GTTAAC	1 cut(s)	165
Hpy166II	GTNNAC	2 cut(s)	165, 180
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	4 cut(s)	17, 34, 121, 389
Hpy8I	GTNNAC	2 cut(s)	165, 180
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	253
Hsp92I	GRCGYC	1 cut(s)	253
Hsp92II	CATG	1 cut(s)	237
KspAI	GTTAAC	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	13, 51
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	5 cut(s)	2, 47, 353, 374, 436
Lsp1109I	GCAGC	1 cut(s)	355
LweI	GCATC	1 cut(s)	366
MaeI	CTAG	1 cut(s)	372
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	15, 53
MboI	GATC	2 cut(s)	13, 51
MboII	GAAGA	1 cut(s)	93
MflI	RGATCY	1 cut(s)	13
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	1 cut(s)	474
MmeI	TCCRAC	1 cut(s)	277
MnlI	CCTC	9 cut(s)	40, 60, 90, 100, 119, 315, 327, 414, 457
MseI	TTAA	2 cut(s)	164, 449
MslI	CAYNNNNRTG	1 cut(s)	276
MwoI	GCNNNNNNNGC	1 cut(s)	69
NdeII	GATC	2 cut(s)	13, 51
NlaIII	CATG	1 cut(s)	237
NlaIV	GGNNCC	1 cut(s)	338
NmuCI	GTSAC	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	64
PkrI	GCNGC	2 cut(s)	356, 370
PspN4I	GGNNCC	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	337
PspXI	VCTCGAGB	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	164, 449
SatI	GCNGC	2 cut(s)	355, 369
Sau3AI	GATC	2 cut(s)	13, 51
Sau96I	GGNCC	1 cut(s)	337
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	8 cut(s)	82, 120, 133, 204, 256, 288, 294, 468
SfaNI	GCATC	1 cut(s)	366
Sfr274I	CTCGAG	1 cut(s)	64
SinI	GGWCC	1 cut(s)	337
SlaI	CTCGAG	1 cut(s)	64
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	2 cut(s)	64, 119
SmoI	CTYRAG	2 cut(s)	64, 119
Sse9I	AATT	1 cut(s)	474
SsiI	CCGC	2 cut(s)	93, 355
SspMI	CTAG	1 cut(s)	372
TaaI	ACNGT	1 cut(s)	177
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	65, 111, 205
TasI	AATT	1 cut(s)	474
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	1 cut(s)	357
Tru1I	TTAA	2 cut(s)	164, 449
Tru9I	TTAA	2 cut(s)	164, 449
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	2 cut(s)	41, 222
TspGWI	ACGGA	1 cut(s)	350
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	337
XhoI	CTCGAG	1 cut(s)	64
XspI	CTAG	1 cut(s)	372
ZraI	GACGTC	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.