Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8153612.1

Orthogroup ID

OG0015922

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 647

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8153612.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 647 bp

ctcagaagatcccccaaccacccaaaaggccaatcatcaacgctcttgtcatctcagcaatagtcggcttgacctttgtgatcggcctcatgctcgcagctctcatccatgaatccactgccgagccaatcgacgagtccccatccctctccagctctgccgagtcaaccatcaaaatcgtctgcaacgtgactcggtaccccgagtcttgcttcacctccatttcctccctcaacagctctcctaaaccagaccctgagtccatcctcaagctctctctccaagtctccatttccgagctttcccatctctcttcggtgttgaagaccatgaactccgatgccgccatccgtgactgccgggaccaggtggaggacgcgttgagtcagctcgatgactcggtgtcggcaatggtggtgggcaaagcgttgactgaagcaaaggtcaaggacgtccagacgtggataagtagtgcggtgacggaccaagagacgtgcttggatggtttggaagagatgggatcagctagtgttgatgaagtgaagaagaagataaagaagtcgatggacttcaccagcaacagcttagccattgtggctaatttcaaggccattcttgacaggtttagccacattccactccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0030054 GO:0030234 GO:0030599 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046910 GO:0050790 GO:0051722 GO:0051723 GO:0052689 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

214

Amino Acids

23.05

Weight (kDa)

5.11

Isoelectric Point (pI)

36.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47670
fragaria_vesca	FvH4_5g15211
malus_domestica	MD06G1191000.v1.1
prunus_persica	Prupe.5G189700_v2.0.a1
pyrus_communis	pycom06g16930
rosa_chinensis	RchiOBHm_Chr7g0180951
rosa_laevigata	RLG00000005222
rosa_multiflora	Rmu_co8153612.1_g000001 Rmu_sc0028417.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272390
rosa_rugosa	Rorug06G0437900
rosa_samantha	Rh7AG039300 Rh7BG038600 Rh7CG040300
rosa_wichuraiana	Rw7G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	455
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AccII	CGCG	1 cut(s)	379
AciI	CCGC	2 cut(s)	344, 475
AclWI	GGATC	2 cut(s)	3, 528
AcuI	CTGAAG	1 cut(s)	455
AcyI	GRCGYC	1 cut(s)	452
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	366, 372
AflIII	ACRYGT	1 cut(s)	377
AgsI	TTSAA	2 cut(s)	324, 606
AhdI	GACNNNNNGTC	2 cut(s)	258, 402
AjiI	CACGTC	2 cut(s)	461, 494
AjnI	CCWGG	1 cut(s)	365
AluBI	AGCT	8 cut(s)	100, 155, 239, 273, 300, 390, 526, 584
AluI	AGCT	8 cut(s)	100, 155, 239, 273, 300, 390, 526, 584
Alw26I	GTCTC	2 cut(s)	291, 484
AlwI	GGATC	2 cut(s)	3, 528
AlwNI	CAGNNNCTG	1 cut(s)	256
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	3 cut(s)	28, 84, 608
ApeKI	GCWGC	1 cut(s)	97
Asp718I	GGTACC	1 cut(s)	197
AspS9I	GGNCC	2 cut(s)	363, 483
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	3 cut(s)	207, 489, 564
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	2 cut(s)	363, 483
BanI	GGYRCC	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	8 cut(s)	150, 178, 271, 314, 355, 496, 510, 558
BciT130I	CCWGG	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	2 cut(s)	291, 484
BfaI	CTAG	1 cut(s)	527
BglI	GCCNNNNNGGC	1 cut(s)	595
BisI	GCNGC	2 cut(s)	98, 344
BlpI	GCTNAGC	1 cut(s)	585
BlsI	GCNGC	2 cut(s)	99, 345
Bme1390I	CCNGG	2 cut(s)	361, 367
Bme18I	GGWCC	2 cut(s)	363, 483
BmeRI	GACNNNNNGTC	2 cut(s)	258, 402
BmeT110I	CYCGRG	1 cut(s)	202
BmgBI	CACGTC	2 cut(s)	461, 494
BmgT120I	GGNCC	2 cut(s)	363, 483
BmiI	GGNNCC	2 cut(s)	199, 364
BmrFI	CCNGG	2 cut(s)	361, 367
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	585
BpuEI	CTTGAG	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	361
BsaHI	GRCGYC	1 cut(s)	452
BsaXI	ACNNNNNCTCC	2 cut(s)	364, 394
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 372
Bse3DI	GCAATG	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	367
BseGI	GGATG	5 cut(s)	104, 142, 263, 347, 507
BseLI	CCNNNNNNNGG	2 cut(s)	366, 372
BseMI	GCAATG	1 cut(s)	416
BseMII	CTCAG	3 cut(s)	16, 68, 248
BseXI	GCAGC	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	30, 86, 610
BshNI	GGYRCC	1 cut(s)	197
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	360
BslFI	GGGAC	2 cut(s)	123, 376
BslI	CCNNNNNNNGG	2 cut(s)	366, 372
BsmAI	GTCTC	2 cut(s)	291, 484
BsmBI	CGTCTC	1 cut(s)	484
BsmFI	GGGAC	2 cut(s)	123, 376
BsnI	GGCC	3 cut(s)	30, 86, 610
BsoBI	CYCGRG	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	8, 80, 520
Bsp1720I	GCTNAGC	1 cut(s)	585
BspACI	CCGC	2 cut(s)	344, 475
BspANI	GGCC	3 cut(s)	30, 86, 610
BspCNI	CTCAG	3 cut(s)	15, 67, 249
BspFNI	CGCG	1 cut(s)	379
BspLI	GGNNCC	2 cut(s)	199, 364
BspPI	GGATC	2 cut(s)	3, 528
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	416
BssMI	GATC	3 cut(s)	8, 80, 520
BssNI	GRCGYC	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	367
Bst6I	CTCTTC	2 cut(s)	318, 506
BstACI	GRCGYC	1 cut(s)	452
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	4 cut(s)	2, 54, 257, 585
BstF5I	GGATG	5 cut(s)	104, 142, 263, 347, 507
BstFNI	CGCG	1 cut(s)	379
BstKTI	GATC	3 cut(s)	11, 83, 523
BstMAI	GTCTC	2 cut(s)	291, 484
BstMBI	GATC	3 cut(s)	8, 80, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	595
BstNI	CCWGG	1 cut(s)	367
BstSCI	CCNGG	2 cut(s)	359, 365
BstUI	CGCG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	109
BstV2I	GAAGAC	1 cut(s)	331
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	30, 86, 610
BtrI	CACGTC	2 cut(s)	461, 494
BtsCI	GGATG	5 cut(s)	104, 142, 263, 347, 507
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	116
Cac8I	GCNNGC	1 cut(s)	95
CaiI	CAGNNNCTG	1 cut(s)	256
Cfr13I	GGNCC	2 cut(s)	363, 483
CseI	GACGC	1 cut(s)	385
CsiI	ACCWGGT	1 cut(s)	365
Csp6I	GTAC	1 cut(s)	198
CspCI	CAANNNNNGTGG	2 cut(s)	398, 433
CviAII	CATG	3 cut(s)	90, 109, 330
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	4 cut(s)	2, 54, 257, 585
DpnI	GATC	3 cut(s)	10, 82, 522
DpnII	GATC	3 cut(s)	8, 80, 520
DriI	GACNNNNNGTC	2 cut(s)	258, 402
Eam1104I	CTCTTC	2 cut(s)	318, 506
Eam1105I	GACNNNNNGTC	2 cut(s)	258, 402
EarI	CTCTTC	2 cut(s)	318, 506
Eco47I	GGWCC	2 cut(s)	363, 483
Eco57I	CTGAAG	1 cut(s)	455
Eco88I	CYCGRG	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	365
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	3 cut(s)	93, 112, 333
FaiI	YATR	3 cut(s)	91, 110, 331
FaqI	GGGAC	2 cut(s)	123, 376
FatI	CATG	3 cut(s)	89, 108, 329
Fnu4HI	GCNGC	2 cut(s)	98, 344
FokI	GGATG	5 cut(s)	91, 129, 250, 334, 514
Fsp4HI	GCNGC	2 cut(s)	98, 344
FspBI	CTAG	1 cut(s)	527
GluI	GCNGC	2 cut(s)	98, 344
GsuI	CTGGAG	1 cut(s)	135
HaeIII	GGCC	3 cut(s)	30, 86, 610
HapII	CCGG	1 cut(s)	360
HgaI	GACGC	1 cut(s)	385
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	3 cut(s)	93, 112, 333
HincII	GTYRAC	2 cut(s)	167, 431
HindII	GTYRAC	2 cut(s)	167, 431
HinfI	GANTC	8 cut(s)	112, 136, 163, 192, 205, 259, 384, 397
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	3 cut(s)	207, 489, 564
Hpy166II	GTNNAC	2 cut(s)	167, 431
Hpy188I	TCNGA	3 cut(s)	5, 297, 339
Hpy188III	TCNNGA	2 cut(s)	456, 616
Hpy8I	GTNNAC	2 cut(s)	167, 431
Hpy99I	CGWCG	1 cut(s)	136
HpyCH4IV	ACGT	4 cut(s)	188, 452, 460, 493
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	595
HpyF3I	CTNAG	4 cut(s)	2, 54, 257, 585
HpySE526I	ACGT	4 cut(s)	188, 452, 460, 493
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	3 cut(s)	93, 112, 333
KpnI	GGTACC	1 cut(s)	201
Kzo9I	GATC	3 cut(s)	8, 80, 520
LpnPI	CCDG	9 cut(s)	165, 263, 269, 352, 373, 379, 469, 588, 606
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	1 cut(s)	330
MabI	ACCWGGT	1 cut(s)	365
MaeI	CTAG	1 cut(s)	527
MaeII	ACGT	4 cut(s)	188, 452, 460, 493
MaeIII	GTNAC	3 cut(s)	189, 352, 477
MalI	GATC	3 cut(s)	10, 82, 522
MboI	GATC	3 cut(s)	8, 80, 520
MboII	GAAGA	7 cut(s)	18, 305, 336, 523, 555, 558, 561
MflI	RGATCY	1 cut(s)	8
MluCI	AATT	1 cut(s)	600
MluI	ACGCGT	1 cut(s)	377
MlyI	GAGTC	7 cut(s)	145, 172, 186, 214, 268, 391, 393
MnlI	CCTC	7 cut(s)	97, 157, 228, 237, 241, 277, 366
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	2 cut(s)	361, 367
MvaI	CCWGG	1 cut(s)	367
MvnI	CGCG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	595
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	3 cut(s)	8, 80, 520
NlaIII	CATG	3 cut(s)	93, 112, 333
NlaIV	GGNNCC	2 cut(s)	199, 364
NmeAIII	GCCGAG	2 cut(s)	147, 186
NmuCI	GTSAC	3 cut(s)	189, 352, 477
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	2 cut(s)	99, 345
PleI	GAGTC	7 cut(s)	144, 171, 186, 213, 267, 391, 392
PpsI	GAGTC	7 cut(s)	144, 171, 186, 213, 267, 391, 392
Psp6I	CCWGG	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	365
PspN4I	GGNNCC	2 cut(s)	199, 364
PspPI	GGNCC	2 cut(s)	363, 483
PstNI	CAGNNNCTG	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SatI	GCNGC	2 cut(s)	98, 344
Sau3AI	GATC	3 cut(s)	8, 80, 520
Sau96I	GGNCC	2 cut(s)	363, 483
SchI	GAGTC	7 cut(s)	145, 172, 186, 214, 268, 391, 393
ScrFI	CCNGG	2 cut(s)	361, 367
SexAI	ACCWGGT	1 cut(s)	365
SfaNI	GCATC	1 cut(s)	330
SinI	GGWCC	2 cut(s)	363, 483
SmlI	CTYRAG	1 cut(s)	268
SmoI	CTYRAG	1 cut(s)	268
Sse9I	AATT	1 cut(s)	600
SsiI	CCGC	2 cut(s)	344, 475
SspMI	CTAG	1 cut(s)	527
StyD4I	CCNGG	2 cut(s)	359, 365
TaiI	ACGT	4 cut(s)	191, 455, 463, 496
TaqI	TCGA	3 cut(s)	131, 392, 562
TasI	AATT	1 cut(s)	600
TauI	GCSGC	1 cut(s)	346
TfiI	GAWTC	1 cut(s)	112
TscAI	CASTG	1 cut(s)	123
TseFI	GTSAC	3 cut(s)	189, 352, 477
TseI	GCWGC	1 cut(s)	97
Tsp45I	GTSAC	3 cut(s)	189, 352, 477
TspDTI	ATGAA	3 cut(s)	125, 346, 551
TspGWI	ACGGA	2 cut(s)	340, 496
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	2 cut(s)	363, 483
XspI	CTAG	1 cut(s)	527
ZraI	GACGTC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.