Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015922

Physical Location & Seq

Genomic Coordinates Reverse (-)

15581665 .. 15582560

Gene Structure 896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G189700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAATCTATCAACATCTTCAAAGGCTATGGCAAAGTAAACCCAGACCAACTTGAAGATCAAACTCAAACCTCAAACCCAAAATCCCCCAAACCCCAAAAGCCCATCTTTTCCATTCTCACCATCTCAGCCCTCATCTGCTTGACCTTGGTGATCGGCCTCCTGCTCGCAGCTCTCATCCACGTGTCCAACTCCGAGTCCCCTTCTCTCTCCAACTCCAACTCGGCCGAGTCAGCCATCAAAACCATCTGCAACGTGACTCGGTACCCCAACTCGTGCTTCACCTCCATCTCCTCCCTCAACACCTCTCCAAAGCCCGACCCAGAAACCATTTTCAAGCTCTCTCTCGAAATCTCCGTCGCCGAGCTCTCAAACGTCTCGTCTCTGTTGAATACGATGAACTCCGATCCCGCGACGCGGGACTGCGTGGATCAGCTCGAGGACGCGCTGAGTCGGCTCAACGACTCGGTTTCGGCGATGGGACAGAAGGCGTTGACCGTGGCTAAAGTCAACGACATACAGACGTGGATAAGCAGCGCTGTGACAGATCAAGAGACGTGCTTGGATGGGTTGGAAGAGATGGGATCAACGGCTGTGGATAAAGTGAAGAGCAAGATGAAGAGGTCCATGGAGTGCACCAGCAACAGCTTAGCCATTGTGGCTAATTTCAAGGCCATTCTTGACAAATTCCACATACCCCTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0030054 GO:0030234 GO:0030599 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046910 GO:0050790 GO:0051722 GO:0051723 GO:0052689 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

236

Amino Acids

25.38

Weight (kDa)

5.24

Isoelectric Point (pI)

34.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47670
fragaria_vesca	FvH4_5g15211
malus_domestica	MD06G1191000.v1.1
prunus_persica	Prupe.5G189700_v2.0.a1
pyrus_communis	pycom06g16930
rosa_chinensis	RchiOBHm_Chr7g0180951
rosa_laevigata	RLG00000005222
rosa_multiflora	Rmu_co8153612.1_g000001 Rmu_sc0028417.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272390
rosa_rugosa	Rorug06G0437900
rosa_samantha	Rh7AG039300 Rh7BG038600 Rh7CG040300
rosa_wichuraiana	Rw7G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	264
AccII	CGCG	3 cut(s)	413, 418, 446
AciI	CCGC	2 cut(s)	411, 418
AclWI	GGATC	3 cut(s)	401, 438, 592
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	686
AcvI	CACGTG	1 cut(s)	184
AfaI	GTAC	1 cut(s)	266
AfeI	AGCGCT	1 cut(s)	538
AfiI	CCNNNNNNNGG	1 cut(s)	417
AflIII	ACRYGT	1 cut(s)	183
AgsI	TTSAA	5 cut(s)	22, 56, 337, 391, 670
AjiI	CACGTC	2 cut(s)	525, 558
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	5 cut(s)	173, 340, 367, 436, 648
AluI	AGCT	5 cut(s)	173, 340, 367, 436, 648
Alw21I	GWGCWC	2 cut(s)	369, 638
Alw26I	GTCTC	3 cut(s)	382, 387, 548
Alw44I	GTGCAC	1 cut(s)	634
AlwI	GGATC	3 cut(s)	401, 438, 592
Ama87I	CYCGRG	1 cut(s)	437
Aor51HI	AGCGCT	1 cut(s)	538
AoxI	GGCC	3 cut(s)	157, 225, 672
ApaLI	GTGCAC	1 cut(s)	634
ApeKI	GCWGC	2 cut(s)	170, 534
ApoI	RAATTY	1 cut(s)	686
ArsI	GACNNNNNNTTYG	4 cut(s)	342, 365, 374, 397
Asp718I	GGTACC	1 cut(s)	264
AspLEI	GCGC	2 cut(s)	448, 539
AspS9I	GGNCC	1 cut(s)	624
AsuHPI	GGTGA	3 cut(s)	112, 163, 274
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	624
BaeGI	GKGCMC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	369
BauI	CACGAG	1 cut(s)	274
BbrPI	CACGTG	1 cut(s)	184
Bbv12I	GWGCWC	2 cut(s)	369, 638
BbvI	GCAGC	2 cut(s)	182, 546
BccI	CCATC	8 cut(s)	113, 131, 245, 254, 296, 472, 560, 574
BceAI	ACGGC	1 cut(s)	606
BcoDI	GTCTC	3 cut(s)	382, 387, 548
BfoI	RGCGCY	1 cut(s)	540
BglI	GCCNNNNNGGC	1 cut(s)	659
BisI	GCNGC	2 cut(s)	171, 535
BlpI	GCTNAGC	1 cut(s)	649
BlsI	GCNGC	2 cut(s)	172, 536
Bme18I	GGWCC	1 cut(s)	624
BmeT110I	CYCGRG	1 cut(s)	437
BmgBI	CACGTC	2 cut(s)	525, 558
BmgT120I	GGNCC	1 cut(s)	624
BmiI	GGNNCC	1 cut(s)	266
Bpu1102I	GCTNAGC	1 cut(s)	649
BsaAI	YACGTR	1 cut(s)	184
BsaJI	CCNNGG	3 cut(s)	147, 498, 627
Bsc4I	CCNNNNNNNGG	1 cut(s)	417
BseDI	CCNNGG	3 cut(s)	147, 498, 627
BseGI	GGATG	2 cut(s)	177, 571
BseLI	CCNNNNNNNGG	1 cut(s)	417
BseMII	CTCAG	2 cut(s)	141, 440
BseRI	GAGGAG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	638
BseX3I	CGGCCG	1 cut(s)	225
BseXI	GCAGC	2 cut(s)	182, 546
Bsh1236I	CGCG	3 cut(s)	413, 418, 446
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	3 cut(s)	159, 227, 674
BshNI	GGYRCC	1 cut(s)	264
BsiEI	CGRYCG	1 cut(s)	228
BsiHKAI	GWGCWC	2 cut(s)	369, 638
BsiHKCI	CYCGRG	1 cut(s)	437
BslFI	GGGAC	3 cut(s)	184, 434, 495
BslI	CCNNNNNNNGG	1 cut(s)	417
BsmAI	GTCTC	3 cut(s)	382, 387, 548
BsmBI	CGTCTC	3 cut(s)	382, 387, 548
BsmFI	GGGAC	3 cut(s)	184, 434, 495
BsnI	GGCC	3 cut(s)	159, 227, 674
BsoBI	CYCGRG	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	369, 638
Bsp143I	GATC	6 cut(s)	58, 153, 406, 430, 547, 584
Bsp1720I	GCTNAGC	1 cut(s)	649
Bsp19I	CCATGG	1 cut(s)	627
BspACI	CCGC	2 cut(s)	411, 418
BspANI	GGCC	3 cut(s)	159, 227, 674
BspCNI	CTCAG	2 cut(s)	140, 441
BspFNI	CGCG	3 cut(s)	413, 418, 446
BspLI	GGNNCC	1 cut(s)	266
BspPI	GGATC	3 cut(s)	401, 438, 592
BspQI	GCTCTTC	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	264
BssECI	CCNNGG	3 cut(s)	147, 498, 627
BssMI	GATC	6 cut(s)	58, 153, 406, 430, 547, 584
BssSI	CACGAG	1 cut(s)	274
BssT1I	CCWWGG	2 cut(s)	147, 627
Bst2BI	CACGAG	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	499
Bst6I	CTCTTC	3 cut(s)	570, 602, 614
BstBAI	YACGTR	1 cut(s)	184
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	3 cut(s)	127, 449, 649
BstDSI	CCRYGG	2 cut(s)	498, 627
BstF5I	GGATG	2 cut(s)	177, 571
BstFNI	CGCG	3 cut(s)	413, 418, 446
BstH2I	RGCGCY	1 cut(s)	540
BstHHI	GCGC	2 cut(s)	448, 539
BstKTI	GATC	6 cut(s)	61, 156, 409, 433, 550, 587
BstMAI	GTCTC	3 cut(s)	382, 387, 548
BstMBI	GATC	6 cut(s)	58, 153, 406, 430, 547, 584
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 454, 659
BstSLI	GKGCMC	1 cut(s)	638
BstUI	CGCG	3 cut(s)	413, 418, 446
BstV1I	GCAGC	2 cut(s)	182, 546
BstZI	CGGCCG	1 cut(s)	225
BsuRI	GGCC	3 cut(s)	159, 227, 674
BtgI	CCRYGG	2 cut(s)	498, 627
BtgZI	GCGATG	1 cut(s)	491
BtrI	CACGTC	2 cut(s)	525, 558
BtsCI	GGATG	2 cut(s)	177, 571
Cac8I	GCNNGC	1 cut(s)	168
CfoI	GCGC	2 cut(s)	448, 539
Cfr13I	GGNCC	1 cut(s)	624
CseI	GACGC	2 cut(s)	424, 452
Csp6I	GTAC	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviAII	CATG	1 cut(s)	628
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	3 cut(s)	127, 449, 649
DpnI	GATC	6 cut(s)	60, 155, 408, 432, 549, 586
DpnII	GATC	6 cut(s)	58, 153, 406, 430, 547, 584
EaeI	YGGCCR	1 cut(s)	225
EagI	CGGCCG	1 cut(s)	225
Eam1104I	CTCTTC	3 cut(s)	570, 602, 614
EarI	CTCTTC	3 cut(s)	570, 602, 614
Ecl136II	GAGCTC	1 cut(s)	367
EclXI	CGGCCG	1 cut(s)	225
Eco130I	CCWWGG	2 cut(s)	147, 627
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	624
Eco47III	AGCGCT	1 cut(s)	538
Eco52I	CGGCCG	1 cut(s)	225
Eco53kI	GAGCTC	1 cut(s)	367
Eco72I	CACGTG	1 cut(s)	184
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	367
EcoT14I	CCWWGG	2 cut(s)	147, 627
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	2 cut(s)	147, 627
Esp3I	CGTCTC	3 cut(s)	382, 387, 548
FaeI	CATG	1 cut(s)	631
FaiI	YATR	4 cut(s)	30, 518, 629, 695
FalI	AAGNNNNNCTT	2 cut(s)	92, 124
FaqI	GGGAC	3 cut(s)	184, 434, 495
FatI	CATG	1 cut(s)	627
FauI	CCCGC	2 cut(s)	411, 418
Fnu4HI	GCNGC	2 cut(s)	171, 535
FokI	GGATG	2 cut(s)	164, 578
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	2 cut(s)	171, 535
GlaI	GCGC	2 cut(s)	447, 538
GluI	GCNGC	2 cut(s)	171, 535
HaeII	RGCGCY	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	159, 227, 674
HgaI	GACGC	2 cut(s)	424, 452
HhaI	GCGC	2 cut(s)	448, 539
Hin1II	CATG	1 cut(s)	631
Hin6I	GCGC	2 cut(s)	446, 537
HinP1I	GCGC	2 cut(s)	446, 537
HincII	GTYRAC	2 cut(s)	495, 511
HindII	GTYRAC	2 cut(s)	495, 511
HinfI	GANTC	6 cut(s)	5, 197, 230, 259, 451, 464
HphI	GGTGA	3 cut(s)	112, 163, 274
Hpy166II	GTNNAC	4 cut(s)	40, 495, 511, 636
Hpy188I	TCNGA	2 cut(s)	196, 406
Hpy188III	TCNNGA	3 cut(s)	347, 551, 680
Hpy8I	GTNNAC	4 cut(s)	40, 495, 511, 636
Hpy99I	CGWCG	2 cut(s)	362, 418
HpyAV	CCTTC	2 cut(s)	213, 481
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	5 cut(s)	183, 255, 375, 524, 557
HpyCH4V	TGCA	2 cut(s)	252, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 454, 659
HpyF3I	CTNAG	3 cut(s)	127, 449, 649
HpySE526I	ACGT	5 cut(s)	183, 255, 375, 524, 557
Hsp92II	CATG	1 cut(s)	631
HspAI	GCGC	2 cut(s)	446, 537
KpnI	GGTACC	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	58, 153, 406, 430, 547, 584
LguI	GCTCTTC	1 cut(s)	602
LpnPI	CCDG	4 cut(s)	57, 176, 336, 652
Lsp1109I	GCAGC	2 cut(s)	182, 546
MaeII	ACGT	5 cut(s)	183, 255, 375, 524, 557
MaeIII	GTNAC	2 cut(s)	256, 541
MalI	GATC	6 cut(s)	60, 155, 408, 432, 549, 586
MboI	GATC	6 cut(s)	58, 153, 406, 430, 547, 584
MboII	GAAGA	5 cut(s)	10, 68, 587, 619, 631
MhlI	GDGCHC	2 cut(s)	369, 638
MluCI	AATT	2 cut(s)	664, 686
MlyI	GAGTC	5 cut(s)	206, 239, 253, 458, 460
MmeI	TCCRAC	4 cut(s)	213, 237, 243, 552
MnlI	CCTC	9 cut(s)	82, 143, 170, 295, 304, 308, 316, 433, 615
MslI	CAYNNNNRTG	1 cut(s)	182
MvnI	CGCG	3 cut(s)	413, 418, 446
MwoI	GCNNNNNNNGC	3 cut(s)	233, 454, 659
NcoI	CCATGG	1 cut(s)	627
NdeII	GATC	6 cut(s)	58, 153, 406, 430, 547, 584
NlaIII	CATG	1 cut(s)	631
NlaIV	GGNNCC	1 cut(s)	266
NmeAIII	GCCGAG	3 cut(s)	203, 253, 388
NmuCI	GTSAC	2 cut(s)	256, 541
PaeR7I	CTCGAG	1 cut(s)	437
PciSI	GCTCTTC	1 cut(s)	602
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 473
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	172, 536
PleI	GAGTC	5 cut(s)	205, 238, 253, 458, 459
PmaCI	CACGTG	1 cut(s)	184
PmlI	CACGTG	1 cut(s)	184
PpsI	GAGTC	5 cut(s)	205, 238, 253, 458, 459
Ppu21I	YACGTR	1 cut(s)	184
Psp124BI	GAGCTC	1 cut(s)	369
PspCI	CACGTG	1 cut(s)	184
PspN4I	GGNNCC	1 cut(s)	266
PspPI	GGNCC	1 cut(s)	624
PspXI	VCTCGAGB	1 cut(s)	437
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	1 cut(s)	182
SacI	GAGCTC	1 cut(s)	369
SapI	GCTCTTC	1 cut(s)	602
SatI	GCNGC	2 cut(s)	171, 535
Sau3AI	GATC	6 cut(s)	58, 153, 406, 430, 547, 584
Sau96I	GGNCC	1 cut(s)	624
SchI	GAGTC	5 cut(s)	206, 239, 253, 458, 460
SduI	GDGCHC	2 cut(s)	369, 638
Sfr274I	CTCGAG	1 cut(s)	437
SinI	GGWCC	1 cut(s)	624
SlaI	CTCGAG	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	2 cut(s)	664, 686
SsiI	CCGC	2 cut(s)	411, 418
SstI	GAGCTC	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	147, 627
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	5 cut(s)	186, 258, 378, 527, 560
TaqI	TCGA	2 cut(s)	348, 438
TasI	AATT	2 cut(s)	664, 686
TfiI	GAWTC	1 cut(s)	5
TseFI	GTSAC	2 cut(s)	256, 541
TseI	GCWGC	2 cut(s)	170, 534
Tsp45I	GTSAC	2 cut(s)	256, 541
TspDTI	ATGAA	2 cut(s)	413, 632
TspGWI	ACGGA	1 cut(s)	346
VneI	GTGCAC	1 cut(s)	634
VpaK11BI	GGWCC	1 cut(s)	624
XapI	RAATTY	1 cut(s)	686
XhoI	CTCGAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.