Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0015922

Physical Location & Seq

Genomic Coordinates Reverse (-)

21041384 .. 21042414

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16930.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTCGGGGCACAAACTATACTCAATCTCAATAGTCATCGGCCCATTAAACCTTCCTTCTCCAAAACTTCATCCAAAACCCCAAAACCAGAGCAGACAAATGGAATCCATCAACCACCTCAAAGGCTATGGCAAAGTCAACCTAGAAACCCTTGAAAACCCAAAACCCCAAAAACCCATCTCCTCCGCCCTCGCCATCTTCGCCGTCATCTGCCTGACTCTAGTGATCACCCTCGCGATCGCCGCCTTCATCCACGAATCCATCACCGAGTCATCCGACGAGTCCCAACCCCAATCCGTCTCCAACTCGGCCGAGTCAACCATCAAAACCGTCTGCAACGTGACGCGCTACCCCGACTCGTGCTTCACTTCCATATCCGCCCTCAACCGTTCTCCAAACCCCGACCCAGAAGCCATTTTCAAGCTCTCCCTTGAAATCTCCGCCGCCGAGCTCTCCCGCCTCTTGGCGTTGTTCAAGACCGTGAACTCCGATCCGGCGACTCAGGACTGCGTTTCTCAGCTGGAGGAAGCGATAAGCCGGGTCAACGACTCGGCGTCGGCGATGAGGGTGGACCCGGGAGAGAAGGCGTTGACTGAAGACAAAGTGAAGGACATACAGACGTGGATAAGCAGCGCGGTGACGGATCAGGAGACGTGCTTGGATGGTTTGGAGGAGATGGGATCGACGGCCGTGGAGGCGGTCAAGAGCGAGATGAATAAGTCAAAGGTGTACAGCAGCAACAGTTTGGCAATTGTGGCCAACTTCAAGGGCATTCTTGACAAGTTCAATATTCCCCTCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0030054 GO:0030234 GO:0030599 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046910 GO:0050790 GO:0051722 GO:0051723 GO:0052689 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

268

Amino Acids

28.93

Weight (kDa)

5.32

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47670
fragaria_vesca	FvH4_5g15211
malus_domestica	MD06G1191000.v1.1
prunus_persica	Prupe.5G189700_v2.0.a1
pyrus_communis	pycom06g16930
rosa_chinensis	RchiOBHm_Chr7g0180951
rosa_laevigata	RLG00000005222
rosa_multiflora	Rmu_co8153612.1_g000001 Rmu_sc0028417.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272390
rosa_rugosa	Rorug06G0437900
rosa_samantha	Rh7AG039300 Rh7BG038600 Rh7CG040300
rosa_wichuraiana	Rw7G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	236, 346, 635
AciI	CCGC	8 cut(s)	186, 243, 378, 441, 444, 457, 635, 698
AclWI	GGATC	3 cut(s)	485, 651, 688
AcoI	YGGCCR	3 cut(s)	309, 687, 756
AcuI	CTGAAG	1 cut(s)	615
AcyI	GRCGYC	1 cut(s)	554
AfaI	GTAC	1 cut(s)	731
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgsI	TTSAA	6 cut(s)	155, 421, 434, 475, 766, 787
AhdI	GACNNNNNGTC	1 cut(s)	553
AjiI	CACGTC	2 cut(s)	621, 654
AluBI	AGCT	3 cut(s)	424, 451, 520
AluI	AGCT	3 cut(s)	424, 451, 520
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	304, 644
AlwI	GGATC	3 cut(s)	485, 651, 688
Ama87I	CYCGRG	1 cut(s)	574
AoxI	GGCC	4 cut(s)	40, 309, 687, 756
ApeKI	GCWGC	2 cut(s)	630, 735
AsiSI	GCGATCGC	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	348, 635
AspS9I	GGNCC	2 cut(s)	41, 571
AsuC2I	CCSGG	3 cut(s)	539, 575, 576
AsuHPI	GGTGA	3 cut(s)	220, 256, 649
AvaI	CYCGRG	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	571
BaeGI	GKGCMC	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	453
BauI	CACGAG	1 cut(s)	358
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	2 cut(s)	642, 747
BccI	CCATC	7 cut(s)	116, 185, 203, 269, 329, 656, 670
BceAI	ACGGC	3 cut(s)	188, 674, 702
BclI	TGATCA	1 cut(s)	225
BcnI	CCSGG	3 cut(s)	539, 575, 576
BcoDI	GTCTC	2 cut(s)	304, 644
BfaI	CTAG	2 cut(s)	143, 221
BglI	GCCNNNNNGGC	1 cut(s)	695
BisI	GCNGC	4 cut(s)	243, 444, 631, 736
BlsI	GCNGC	4 cut(s)	244, 445, 632, 737
Bme1390I	CCNGG	3 cut(s)	539, 575, 576
Bme18I	GGWCC	1 cut(s)	571
BmeRI	GACNNNNNGTC	1 cut(s)	553
BmeT110I	CYCGRG	1 cut(s)	574
BmgBI	CACGTC	2 cut(s)	621, 654
BmgT120I	GGNCC	2 cut(s)	41, 571
BmiI	GGNNCC	1 cut(s)	573
BmrFI	CCNGG	3 cut(s)	539, 575, 576
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	542
BpuMI	CCSGG	3 cut(s)	539, 575, 576
BsaHI	GRCGYC	1 cut(s)	554
BsaJI	CCNNGG	2 cut(s)	574, 690
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
BseDI	CCNNGG	2 cut(s)	574, 690
BseGI	GGATG	4 cut(s)	70, 249, 272, 667
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMII	CTCAG	2 cut(s)	515, 530
BseRI	GAGGAG	2 cut(s)	172, 686
BseSI	GKGCMC	1 cut(s)	12
BseX3I	CGGCCG	2 cut(s)	309, 687
BseXI	GCAGC	2 cut(s)	642, 747
Bsh1236I	CGCG	3 cut(s)	236, 346, 635
Bsh1285I	CGRYCG	3 cut(s)	240, 312, 690
BshFI	GGCC	4 cut(s)	42, 311, 689, 758
BsiEI	CGRYCG	3 cut(s)	240, 312, 690
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	574
BsiSI	CCGG	3 cut(s)	494, 538, 575
BslFI	GGGAC	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	463
BsmAI	GTCTC	2 cut(s)	304, 644
BsmBI	CGTCTC	2 cut(s)	304, 644
BsmFI	GGGAC	1 cut(s)	268
BsmI	GAATGC	1 cut(s)	771
BsnI	GGCC	4 cut(s)	42, 311, 689, 758
BsoBI	CYCGRG	1 cut(s)	574
Bsp1286I	GDGCHC	2 cut(s)	12, 453
Bsp1407I	TGTACA	1 cut(s)	729
Bsp143I	GATC	5 cut(s)	225, 237, 490, 643, 680
Bsp68I	TCGCGA	1 cut(s)	236
BspACI	CCGC	8 cut(s)	186, 243, 378, 441, 444, 457, 635, 698
BspANI	GGCC	4 cut(s)	42, 311, 689, 758
BspCNI	CTCAG	2 cut(s)	514, 529
BspFNI	CGCG	3 cut(s)	236, 346, 635
BspLI	GGNNCC	1 cut(s)	573
BspPI	GGATC	3 cut(s)	485, 651, 688
BsrGI	TGTACA	1 cut(s)	729
BssECI	CCNNGG	2 cut(s)	574, 690
BssMI	GATC	5 cut(s)	225, 237, 490, 643, 680
BssNI	GRCGYC	1 cut(s)	554
BssSI	CACGAG	1 cut(s)	358
Bst2BI	CACGAG	1 cut(s)	358
Bst4CI	ACNGT	4 cut(s)	331, 389, 481, 743
BstACI	GRCGYC	1 cut(s)	554
BstAUI	TGTACA	1 cut(s)	729
BstDEI	CTNAG	2 cut(s)	501, 516
BstDSI	CCRYGG	1 cut(s)	690
BstF5I	GGATG	4 cut(s)	70, 249, 272, 667
BstFNI	CGCG	3 cut(s)	236, 346, 635
BstHHI	GCGC	2 cut(s)	348, 635
BstKTI	GATC	5 cut(s)	228, 240, 493, 646, 683
BstMAI	GTCTC	2 cut(s)	304, 644
BstMBI	GATC	5 cut(s)	225, 237, 490, 643, 680
BstMCI	CGRYCG	3 cut(s)	240, 312, 690
BstMWI	GCNNNNNNNGC	4 cut(s)	200, 242, 695, 755
BstSCI	CCNGG	3 cut(s)	537, 573, 574
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	3 cut(s)	236, 346, 635
BstV1I	GCAGC	2 cut(s)	642, 747
BstV2I	GAAGAC	1 cut(s)	603
BstZI	CGGCCG	2 cut(s)	309, 687
BsuRI	GGCC	4 cut(s)	42, 311, 689, 758
BtgI	CCRYGG	1 cut(s)	690
BtgZI	GCGATG	1 cut(s)	575
BtrI	CACGTC	2 cut(s)	621, 654
BtsCI	GGATG	4 cut(s)	70, 249, 272, 667
BtuMI	TCGCGA	1 cut(s)	236
CfoI	GCGC	2 cut(s)	348, 635
Cfr13I	GGNCC	2 cut(s)	41, 571
Cfr9I	CCCGGG	1 cut(s)	574
CseI	GACGC	2 cut(s)	352, 543
Csp6I	GTAC	1 cut(s)	730
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	2 cut(s)	501, 516
DpnI	GATC	5 cut(s)	227, 239, 492, 645, 682
DpnII	GATC	5 cut(s)	225, 237, 490, 643, 680
DriI	GACNNNNNGTC	1 cut(s)	553
EaeI	YGGCCR	3 cut(s)	309, 687, 756
EagI	CGGCCG	2 cut(s)	309, 687
Eam1105I	GACNNNNNGTC	1 cut(s)	553
EciI	GGCGGA	3 cut(s)	175, 367, 430
Ecl136II	GAGCTC	1 cut(s)	451
EclXI	CGGCCG	2 cut(s)	309, 687
Eco24I	GRGCYC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	571
Eco52I	CGGCCG	2 cut(s)	309, 687
Eco53kI	GAGCTC	1 cut(s)	451
Eco57I	CTGAAG	1 cut(s)	615
Eco88I	CYCGRG	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	453
Esp3I	CGTCTC	2 cut(s)	304, 644
FaiI	YATR	4 cut(s)	19, 129, 374, 614
FaqI	GGGAC	1 cut(s)	268
FauI	CCCGC	1 cut(s)	464
FbaI	TGATCA	1 cut(s)	225
Fnu4HI	GCNGC	4 cut(s)	243, 444, 631, 736
FokI	GGATG	4 cut(s)	57, 236, 259, 674
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	4 cut(s)	243, 444, 631, 736
FspBI	CTAG	2 cut(s)	143, 221
GlaI	GCGC	2 cut(s)	347, 634
GluI	GCNGC	4 cut(s)	243, 444, 631, 736
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	4 cut(s)	42, 311, 689, 758
HapII	CCGG	3 cut(s)	494, 538, 575
HgaI	GACGC	2 cut(s)	352, 543
HhaI	GCGC	2 cut(s)	348, 635
Hin1I	GRCGYC	1 cut(s)	554
Hin6I	GCGC	2 cut(s)	346, 633
HinP1I	GCGC	2 cut(s)	346, 633
HincII	GTYRAC	4 cut(s)	139, 318, 544, 591
HindII	GTYRAC	4 cut(s)	139, 318, 544, 591
HinfI	GANTC	9 cut(s)	104, 217, 257, 269, 281, 314, 356, 499, 548
HpaII	CCGG	3 cut(s)	494, 538, 575
HphI	GGTGA	3 cut(s)	220, 256, 649
Hpy166II	GTNNAC	7 cut(s)	139, 318, 484, 544, 571, 591, 730
Hpy188I	TCNGA	2 cut(s)	277, 490
Hpy188III	TCNNGA	6 cut(s)	235, 475, 503, 647, 703, 776
Hpy8I	GTNNAC	7 cut(s)	139, 318, 484, 544, 571, 591, 730
Hpy99I	CGWCG	3 cut(s)	281, 559, 688
HpyAV	CCTTC	5 cut(s)	62, 66, 256, 577, 601
HpyCH4III	ACNGT	4 cut(s)	331, 389, 481, 743
HpyCH4IV	ACGT	3 cut(s)	339, 620, 653
HpyCH4V	TGCA	1 cut(s)	336
HpyF10VI	GCNNNNNNNGC	4 cut(s)	200, 242, 695, 755
HpyF3I	CTNAG	2 cut(s)	501, 516
HpySE526I	ACGT	3 cut(s)	339, 620, 653
Hsp92I	GRCGYC	1 cut(s)	554
HspAI	GCGC	2 cut(s)	346, 633
Ksp22I	TGATCA	1 cut(s)	225
Kzo9I	GATC	5 cut(s)	225, 237, 490, 643, 680
LpnPI	CCDG	9 cut(s)	101, 227, 420, 488, 506, 507, 551, 588, 632
Lsp1109I	GCAGC	2 cut(s)	642, 747
MaeI	CTAG	2 cut(s)	143, 221
MaeII	ACGT	3 cut(s)	339, 620, 653
MaeIII	GTNAC	2 cut(s)	340, 637
MalI	GATC	5 cut(s)	227, 239, 492, 645, 682
MboI	GATC	5 cut(s)	225, 237, 490, 643, 680
MboII	GAAGA	2 cut(s)	190, 608
MfeI	CAATTG	1 cut(s)	750
MhlI	GDGCHC	2 cut(s)	12, 453
MlsI	TGGCCA	1 cut(s)	758
MluCI	AATT	1 cut(s)	750
MluNI	TGGCCA	1 cut(s)	758
MlyI	GAGTC	7 cut(s)	211, 278, 290, 323, 350, 493, 542
MmeI	TCCRAC	2 cut(s)	300, 327
Mox20I	TGGCCA	1 cut(s)	758
MscI	TGGCCA	1 cut(s)	758
MseI	TTAA	1 cut(s)	47
Msp20I	TGGCCA	1 cut(s)	758
MspA1I	CMGCKG	1 cut(s)	520
MspI	CCGG	3 cut(s)	494, 538, 575
MspR9I	CCNGG	3 cut(s)	539, 575, 576
MunI	CAATTG	1 cut(s)	750
Mva1269I	GAATGC	1 cut(s)	771
MvnI	CGCG	3 cut(s)	236, 346, 635
MwoI	GCNNNNNNNGC	4 cut(s)	200, 242, 695, 755
NciI	CCSGG	3 cut(s)	539, 575, 576
NdeII	GATC	5 cut(s)	225, 237, 490, 643, 680
NlaIV	GGNNCC	1 cut(s)	573
NmeAIII	GCCGAG	4 cut(s)	287, 337, 472, 530
NmuCI	GTSAC	2 cut(s)	340, 637
NruI	TCGCGA	1 cut(s)	236
PcsI	WCGNNNNNNNCGW	1 cut(s)	557
PctI	GAATGC	1 cut(s)	771
PfeI	GAWTC	2 cut(s)	104, 257
PkrI	GCNGC	4 cut(s)	244, 445, 632, 737
Ple19I	CGATCG	1 cut(s)	240
PleI	GAGTC	7 cut(s)	211, 277, 289, 322, 350, 493, 542
PpsI	GAGTC	7 cut(s)	211, 277, 289, 322, 350, 493, 542
Psp124BI	GAGCTC	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	573
PspPI	GGNCC	2 cut(s)	41, 571
PvuI	CGATCG	1 cut(s)	240
PvuII	CAGCTG	1 cut(s)	520
RgaI	GCGATCGC	1 cut(s)	240
RruI	TCGCGA	1 cut(s)	236
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
SacI	GAGCTC	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	47
SatI	GCNGC	4 cut(s)	243, 444, 631, 736
Sau3AI	GATC	5 cut(s)	225, 237, 490, 643, 680
Sau96I	GGNCC	2 cut(s)	41, 571
SchI	GAGTC	7 cut(s)	211, 278, 290, 323, 350, 493, 542
ScrFI	CCNGG	3 cut(s)	539, 575, 576
SduI	GDGCHC	2 cut(s)	12, 453
SfaAI	GCGATCGC	1 cut(s)	240
SgfI	GCGATCGC	1 cut(s)	240
SinI	GGWCC	1 cut(s)	571
SmaI	CCCGGG	1 cut(s)	576
Sse9I	AATT	1 cut(s)	750
SsiI	CCGC	8 cut(s)	186, 243, 378, 441, 444, 457, 635, 698
SspI	AATATT	1 cut(s)	790
SspMI	CTAG	2 cut(s)	143, 221
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	3 cut(s)	537, 573, 574
TaaI	ACNGT	4 cut(s)	331, 389, 481, 743
TaiI	ACGT	3 cut(s)	342, 623, 656
TaqI	TCGA	1 cut(s)	683
TasI	AATT	1 cut(s)	750
TatI	WGTACW	1 cut(s)	729
TauI	GCSGC	2 cut(s)	245, 446
TfiI	GAWTC	2 cut(s)	104, 257
Tru1I	TTAA	1 cut(s)	47
Tru9I	TTAA	1 cut(s)	47
TseFI	GTSAC	2 cut(s)	340, 637
TseI	GCWGC	2 cut(s)	630, 735
Tsp45I	GTSAC	2 cut(s)	340, 637
TspDTI	ATGAA	3 cut(s)	59, 238, 728
TspGWI	ACGGA	2 cut(s)	286, 656
TspMI	CCCGGG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	571
XmaI	CCCGGG	1 cut(s)	574
XspI	CTAG	2 cut(s)	143, 221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.