Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015922

Physical Location & Seq

Genomic Coordinates Forward (+)

8588726 .. 8589622

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g15211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGTTTTCCTTTGTGAGCTGTTGCACATCATCAATCTGCTTCTCGAGTACTCAATCGCCACAAGTCATCGACCCAACAACACCAATCTTCTTCTGCCTTTGCCAAACCCCAAAACCAGAAATGGACTCCATCAACGTTCCCAAAGGCTACGGCAAGGTAAACCCAGAACACCACCTAGAAGTCCAAGCTCAGAAGATCCCTCAACTCCCCAAAAGGCCGATCATCTCCACCCTTGTCATCTCAGCAATAGCCGGCCTGACCTTGGTGATCGGCCTCATGCTCGTAGCTCTCATCCATAAATCCACCACCGAGCCAATCGACGAGTCTCCATCCCTCTCCACCTCCGCCGAGTCAACCATCAAAACCGTCTGCAATGTCACTCTGTACCCTGAGCCTTGCTACACCTCCATCTCCTCCCTCAACAGCTCTCCTAAACCAGACCCACAATCCATCCTCAAGCTCTCTCTCCAAGTCTCCATTTCCGAGCTTTCCCAACTCTCTTTGGTGCTGAAGACCATGAACTCGGATGCGGCGGTCCGTGACTGCCGGGACCAGGTGGAGGACGCGCTGAGCCAGCTCAATGACTCGGTGTCGGCAATGGTGGTGGGAGAAGGGTTGACTGAAGCAAAGGTCAAGGACGTCCAGACGTGGGTGAGTAGTGCGGTGACGGATCAGGAGACGTGCTTGGATGGTTTGGAAGAGATGGGATCAGCGAGTGTTGATGATGTGAAGAAGAAGATGAGGAAGTCGATGGAGTTCACCAGCAACAGCTTAGCCATTGTGGCTAATTTCGACAAGTTTAGCCACATTCCACTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0008150 GO:0009506 GO:0012505 GO:0016020 GO:0016787 GO:0016788 GO:0030054 GO:0030234 GO:0030599 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046910 GO:0050790 GO:0051722 GO:0051723 GO:0052689 GO:0055044 GO:0065007 GO:0065009 GO:0071944 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PMEI

Protein Analysis

274

Amino Acids

29.56

Weight (kDa)

5.04

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMEI	PF04043	119 - 260	1.6e-33	Plant invertase/pectin methylesterase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47670
fragaria_vesca	FvH4_5g15211
malus_domestica	MD06G1191000.v1.1
prunus_persica	Prupe.5G189700_v2.0.a1
pyrus_communis	pycom06g16930
rosa_chinensis	RchiOBHm_Chr7g0180951
rosa_laevigata	RLG00000005222
rosa_multiflora	Rmu_co8153612.1_g000001 Rmu_sc0028417.1_g000005
rosa_roxburghii	Rroxscaffold_3G00272390
rosa_rugosa	Rorug06G0437900
rosa_samantha	Rh7AG039300 Rh7BG038600 Rh7CG040300
rosa_wichuraiana	Rw7G003220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	642
AccII	CGCG	1 cut(s)	566
AciI	CCGC	4 cut(s)	345, 530, 533, 662
AclI	AACGTT	1 cut(s)	135
AclWI	GGATC	3 cut(s)	190, 678, 715
AcuI	CTGAAG	2 cut(s)	530, 642
AcyI	GRCGYC	1 cut(s)	639
AfaI	GTAC	2 cut(s)	49, 386
AfiI	CCNNNNNNNGG	4 cut(s)	262, 553, 559, 649
AhdI	GACNNNNNGTC	1 cut(s)	589
AjiI	CACGTC	2 cut(s)	648, 681
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	8 cut(s)	18, 188, 287, 426, 460, 487, 577, 771
AluI	AGCT	8 cut(s)	18, 188, 287, 426, 460, 487, 577, 771
Alw26I	GTCTC	3 cut(s)	330, 478, 671
AlwI	GGATC	3 cut(s)	190, 678, 715
Ama87I	CYCGRG	1 cut(s)	43
AoxI	GGCC	3 cut(s)	215, 253, 271
AspLEI	GCGC	1 cut(s)	568
AspS9I	GGNCC	2 cut(s)	535, 550
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	4 cut(s)	277, 664, 676, 751
AvaI	CYCGRG	1 cut(s)	43
AvaII	GGWCC	2 cut(s)	535, 550
BbsI	GAAGAC	1 cut(s)	518
BccI	CCATC	8 cut(s)	137, 337, 365, 416, 458, 683, 697, 745
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	554
BcnI	CCSGG	1 cut(s)	548
BcoDI	GTCTC	3 cut(s)	330, 478, 671
BfaI	CTAG	1 cut(s)	176
BglI	GCCNNNNNGGC	1 cut(s)	782
BisI	GCNGC	1 cut(s)	531
BlpI	GCTNAGC	2 cut(s)	569, 772
BlsI	GCNGC	1 cut(s)	532
BmcAI	AGTACT	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	548, 554
Bme18I	GGWCC	2 cut(s)	535, 550
BmeRI	GACNNNNNGTC	1 cut(s)	589
BmeT110I	CYCGRG	1 cut(s)	43
BmgBI	CACGTC	2 cut(s)	648, 681
BmgT120I	GGNCC	2 cut(s)	535, 550
BmiI	GGNNCC	1 cut(s)	551
BmrFI	CCNGG	2 cut(s)	548, 554
BmsI	GCATC	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu1102I	GCTNAGC	2 cut(s)	569, 772
BpuEI	CTTGAG	1 cut(s)	440
BpuMI	CCSGG	1 cut(s)	548
BsaHI	GRCGYC	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	4 cut(s)	262, 553, 559, 649
Bse118I	RCCGGY	1 cut(s)	251
Bse3DI	GCAATG	2 cut(s)	379, 603
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	1 cut(s)	261
BseGI	GGATG	5 cut(s)	291, 329, 450, 532, 694
BseLI	CCNNNNNNNGG	4 cut(s)	262, 553, 559, 649
BseMI	GCAATG	2 cut(s)	379, 603
BseMII	CTCAG	4 cut(s)	203, 255, 381, 560
BseRI	GAGGAG	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	566
BshFI	GGCC	3 cut(s)	217, 255, 273
BsiHKCI	CYCGRG	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	252, 547
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	4 cut(s)	262, 553, 559, 649
BsmAI	GTCTC	3 cut(s)	330, 478, 671
BsmBI	CGTCTC	1 cut(s)	671
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	3 cut(s)	217, 255, 273
BsoBI	CYCGRG	1 cut(s)	43
Bsp143I	GATC	5 cut(s)	195, 219, 267, 670, 707
Bsp1720I	GCTNAGC	2 cut(s)	569, 772
BspACI	CCGC	4 cut(s)	345, 530, 533, 662
BspANI	GGCC	3 cut(s)	217, 255, 273
BspCNI	CTCAG	4 cut(s)	202, 254, 382, 561
BspFNI	CGCG	1 cut(s)	566
BspLI	GGNNCC	1 cut(s)	551
BspPI	GGATC	3 cut(s)	190, 678, 715
BsrDI	GCAATG	2 cut(s)	379, 603
BsrFI	RCCGGY	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	1 cut(s)	261
BssMI	GATC	5 cut(s)	195, 219, 267, 670, 707
BssNI	GRCGYC	1 cut(s)	639
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	1 cut(s)	367
Bst6I	CTCTTC	1 cut(s)	693
BstACI	GRCGYC	1 cut(s)	639
BstC8I	GCNNGC	2 cut(s)	253, 575
BstDEI	CTNAG	5 cut(s)	189, 241, 390, 569, 772
BstF5I	GGATG	5 cut(s)	291, 329, 450, 532, 694
BstFNI	CGCG	1 cut(s)	566
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	5 cut(s)	198, 222, 270, 673, 710
BstMAI	GTCTC	3 cut(s)	330, 478, 671
BstMBI	GATC	5 cut(s)	195, 219, 267, 670, 707
BstMWI	GCNNNNNNNGC	2 cut(s)	574, 782
BstNI	CCWGG	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	546, 552
BstUI	CGCG	1 cut(s)	566
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	1 cut(s)	195
BstYI	RGATCY	1 cut(s)	195
BsuRI	GGCC	3 cut(s)	217, 255, 273
BtrI	CACGTC	2 cut(s)	648, 681
BtsCI	GGATG	5 cut(s)	291, 329, 450, 532, 694
Cac8I	GCNNGC	2 cut(s)	253, 575
CfoI	GCGC	1 cut(s)	568
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	2 cut(s)	535, 550
CpoI	CGGWCCG	1 cut(s)	535
CseI	GACGC	1 cut(s)	572
CsiI	ACCWGGT	1 cut(s)	552
Csp6I	GTAC	2 cut(s)	48, 385
CspCI	CAANNNNNGTGG	2 cut(s)	585, 620
CspI	CGGWCCG	1 cut(s)	535
CviAII	CATG	2 cut(s)	277, 517
CviQI	GTAC	2 cut(s)	48, 385
DdeI	CTNAG	5 cut(s)	189, 241, 390, 569, 772
DpnI	GATC	5 cut(s)	197, 221, 269, 672, 709
DpnII	GATC	5 cut(s)	195, 219, 267, 670, 707
DriI	GACNNNNNGTC	1 cut(s)	589
Eam1104I	CTCTTC	1 cut(s)	693
Eam1105I	GACNNNNNGTC	1 cut(s)	589
EarI	CTCTTC	1 cut(s)	693
EciI	GGCGGA	1 cut(s)	334
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	2 cut(s)	535, 550
Eco57I	CTGAAG	2 cut(s)	530, 642
Eco88I	CYCGRG	1 cut(s)	43
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	671
FaeI	CATG	2 cut(s)	280, 520
FaiI	YATR	3 cut(s)	278, 297, 518
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	2 cut(s)	276, 516
Fnu4HI	GCNGC	1 cut(s)	531
FokI	GGATG	5 cut(s)	278, 316, 437, 539, 701
Fsp4HI	GCNGC	1 cut(s)	531
FspBI	CTAG	1 cut(s)	176
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	217, 255, 273
HapII	CCGG	2 cut(s)	252, 547
HgaI	GACGC	1 cut(s)	572
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	1 cut(s)	639
Hin1II	CATG	2 cut(s)	280, 520
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HincII	GTYRAC	2 cut(s)	354, 618
HindII	GTYRAC	2 cut(s)	354, 618
HinfI	GANTC	4 cut(s)	125, 323, 350, 584
HpaII	CCGG	2 cut(s)	252, 547
HphI	GGTGA	4 cut(s)	277, 664, 676, 751
Hpy166II	GTNNAC	4 cut(s)	160, 354, 618, 759
Hpy188I	TCNGA	3 cut(s)	192, 484, 526
Hpy188III	TCNNGA	3 cut(s)	43, 643, 674
Hpy8I	GTNNAC	4 cut(s)	160, 354, 618, 759
Hpy99I	CGWCG	1 cut(s)	323
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	1 cut(s)	367
HpyCH4IV	ACGT	4 cut(s)	135, 639, 647, 680
HpyCH4V	TGCA	2 cut(s)	24, 372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	574, 782
HpyF3I	CTNAG	5 cut(s)	189, 241, 390, 569, 772
HpySE526I	ACGT	4 cut(s)	135, 639, 647, 680
Hsp92I	GRCGYC	1 cut(s)	639
Hsp92II	CATG	2 cut(s)	280, 520
HspAI	GCGC	1 cut(s)	566
KroI	GCCGGC	1 cut(s)	251
KroNI	GCCGGC	1 cut(s)	253
Kzo9I	GATC	5 cut(s)	195, 219, 267, 670, 707
LweI	GCATC	1 cut(s)	517
MabI	ACCWGGT	1 cut(s)	552
MaeI	CTAG	1 cut(s)	176
MaeII	ACGT	4 cut(s)	135, 639, 647, 680
MaeIII	GTNAC	3 cut(s)	376, 539, 664
MalI	GATC	5 cut(s)	197, 221, 269, 672, 709
MboI	GATC	5 cut(s)	195, 219, 267, 670, 707
MboII	GAAGA	8 cut(s)	79, 82, 205, 523, 710, 742, 745, 748
MflI	RGATCY	1 cut(s)	195
MluCI	AATT	1 cut(s)	787
MlyI	GAGTC	4 cut(s)	119, 332, 359, 578
MroNI	GCCGGC	1 cut(s)	251
MspI	CCGG	2 cut(s)	252, 547
MspR9I	CCNGG	2 cut(s)	548, 554
MvaI	CCWGG	1 cut(s)	554
MvnI	CGCG	1 cut(s)	566
MwoI	GCNNNNNNNGC	2 cut(s)	574, 782
NaeI	GCCGGC	1 cut(s)	253
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	5 cut(s)	195, 219, 267, 670, 707
NgoMIV	GCCGGC	1 cut(s)	251
NlaIII	CATG	2 cut(s)	280, 520
NlaIV	GGNNCC	1 cut(s)	551
NmeAIII	GCCGAG	1 cut(s)	373
NmuCI	GTSAC	3 cut(s)	376, 539, 664
PaeR7I	CTCGAG	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	532
PleI	GAGTC	4 cut(s)	119, 331, 358, 578
PpsI	GAGTC	4 cut(s)	119, 331, 358, 578
Psp1406I	AACGTT	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	1 cut(s)	551
PspPI	GGNCC	2 cut(s)	535, 550
PsuI	RGATCY	1 cut(s)	195
RsaI	GTAC	2 cut(s)	49, 386
RsaNI	GTAC	2 cut(s)	48, 385
Rsr2I	CGGWCCG	1 cut(s)	535
RsrII	CGGWCCG	1 cut(s)	535
SatI	GCNGC	1 cut(s)	531
Sau3AI	GATC	5 cut(s)	195, 219, 267, 670, 707
Sau96I	GGNCC	2 cut(s)	535, 550
ScaI	AGTACT	1 cut(s)	49
SchI	GAGTC	4 cut(s)	119, 332, 359, 578
ScrFI	CCNGG	2 cut(s)	548, 554
SexAI	ACCWGGT	1 cut(s)	552
SfaNI	GCATC	1 cut(s)	517
Sfr274I	CTCGAG	1 cut(s)	43
SinI	GGWCC	2 cut(s)	535, 550
SlaI	CTCGAG	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	43, 455
SmoI	CTYRAG	2 cut(s)	43, 455
Sse9I	AATT	1 cut(s)	787
SsiI	CCGC	4 cut(s)	345, 530, 533, 662
SspMI	CTAG	1 cut(s)	176
StyD4I	CCNGG	2 cut(s)	546, 552
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	1 cut(s)	367
TaiI	ACGT	4 cut(s)	138, 642, 650, 683
TaqI	TCGA	5 cut(s)	44, 69, 318, 749, 792
TasI	AATT	1 cut(s)	787
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	533
TseFI	GTSAC	3 cut(s)	376, 539, 664
Tsp45I	GTSAC	3 cut(s)	376, 539, 664
TspDTI	ATGAA	2 cut(s)	533, 806
TspGWI	ACGGA	2 cut(s)	527, 683
VpaK11BI	GGWCC	2 cut(s)	535, 550
XhoI	CTCGAG	1 cut(s)	43
XspI	CTAG	1 cut(s)	176
ZraI	GACGTC	1 cut(s)	640
ZrmI	AGTACT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.