Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011892

Physical Location & Seq

Genomic Coordinates Forward (+)

18034935 .. 18037041

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGACTTCGTTAGCACGAATCTCTAAAAGAAGCATAACATCGGCTGTTTCATCGAATCTGATTCGGCGTTACTTCGCCGCGGAAGCAGTAGCGGTGGCGACGACGGAAACACCTAAACCGAAATCGCAGGTGACGCCGTCGCCGGATCGGGTAAAATGGGACTACAGAGGCCAGAGACAGATAATTCCTCTGGGACAGTGGCTACCGAAGGTAGCTGTAGATGCTTACGTGGCACCTAACGTTGTGTTGGCTGGTCAGGTCACCGTCTGGGACGGCTCGTCTGTATGGAACGGTGCCGTTTTGAGAGGAGATCTTAATAAGATCACCGTTGGATTCTGCTCAAATGTCCAGGAACGGTGTGTTGTTCATGCTGCGTGGTCGTCGCCTACAGGATTACCAGCACAAACATTGATCGATAGGTACGTGACAGTTGGTGCATACAGTCTTTTAAGATCATGCACTATCGAACCAGAATGCATCATCGGGCAACACTCAATCCTAATGGAAGGTTCACTGGTCGAAACCCGCTCAATCCTAGAAGCTGGTTCTGTTTTACCACCTGGCAGAAGAATCCCATCTGGTGAACTATGGGGAGGCAATCCAGCAAGGTTTATTCGAACACTCACCAATGAAGAAACCTTAGAGATCCCGAAACTTGCTGTTGCCATTAACCACCTAAGTGGAGATTACTTCTCAGAGTTCTTGCCTTACTCAACTATCTATCTAGAGGTTGAGAAGTTCAAGAAATCCCTTGGAATCGCCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009853 GO:0009987 GO:0010033 GO:0010228 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070469 GO:0097305 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

256

Amino Acids

27.96

Weight (kDa)

8.88

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48680 AT5G63510 AT5G63510
fragaria_vesca	FvH4_5g08540
malus_domestica	MD06G1140000.v1.1 MD14G1155400.v1.1
prunus_persica	Prupe.5G149300_v2.0.a1
pyrus_communis	pycom06g13030 pycom14g12910
rosa_chinensis	RchiOBHm_Chr7g0189861
rosa_laevigata	RLG00000004581
rosa_multiflora	Rmu_sc0000512.1_g000019
rosa_roxburghii	Rroxscaffold_3G00265080
rosa_rugosa	Rorug06G0500300
rosa_samantha	Rh7AG105700 Rh7BG108500 Rh7CG110500 Rh7DG108800
rosa_wichuraiana	Rw7G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	121
Acc36I	ACCTGC	1 cut(s)	121
AccB1I	GGYRCC	2 cut(s)	235, 296
AccBSI	CCGCTC	1 cut(s)	531
AccII	CGCG	1 cut(s)	83
AciI	CCGC	4 cut(s)	81, 83, 95, 529
AclI	AACGTT	1 cut(s)	243
AclWI	GGATC	2 cut(s)	156, 643
AcyI	GRCGYC	1 cut(s)	137
AfaI	GTAC	1 cut(s)	425
AgsI	TTSAA	1 cut(s)	745
AhdI	GACNNNNNGTC	1 cut(s)	280
AjnI	CCWGG	2 cut(s)	351, 562
AleI	CACNNNNGTG	1 cut(s)	681
AluBI	AGCT	2 cut(s)	218, 545
AluI	AGCT	2 cut(s)	218, 545
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	2 cut(s)	156, 643
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	1 cut(s)	374
AsuHPI	GGTGA	5 cut(s)	145, 256, 319, 596, 619
AsuII	TTCGAA	1 cut(s)	619
BanI	GGYRCC	2 cut(s)	235, 296
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	586
BceAI	ACGGC	3 cut(s)	124, 284, 292
BciT130I	CCWGG	2 cut(s)	353, 564
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	3 cut(s)	539, 728, 769
BfmI	CTRYAG	3 cut(s)	166, 219, 390
BfuAI	ACCTGC	1 cut(s)	121
BglII	AGATCT	1 cut(s)	313
BisI	GCNGC	2 cut(s)	81, 375
BlsI	GCNGC	2 cut(s)	82, 376
Bme1390I	CCNGG	2 cut(s)	353, 564
BmeRI	GACNNNNNGTC	1 cut(s)	280
BmiI	GGNNCC	2 cut(s)	237, 298
BmrFI	CCNGG	2 cut(s)	353, 564
BmsI	GCATC	2 cut(s)	214, 489
Bpu14I	TTCGAA	1 cut(s)	619
Bsa29I	ATCGAT	1 cut(s)	417
BsaAI	YACGTR	2 cut(s)	232, 427
BsaHI	GRCGYC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	81, 754
Bse1I	ACTGG	1 cut(s)	522
BseBI	CCWGG	2 cut(s)	353, 564
BseCI	ATCGAT	1 cut(s)	417
BseDI	CCNNGG	2 cut(s)	81, 754
BseMII	CTCAG	1 cut(s)	711
BseNI	ACTGG	1 cut(s)	522
BseRI	GAGGAG	1 cut(s)	324
BseXI	GCAGC	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	2 cut(s)	235, 296
BshVI	ATCGAT	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	3 cut(s)	176, 210, 287
BsmAI	GTCTC	1 cut(s)	172
BsmFI	GGGAC	3 cut(s)	176, 210, 287
BsmI	GAATGC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	619
Bsp143I	GATC	6 cut(s)	148, 313, 324, 414, 455, 648
BspACI	CCGC	4 cut(s)	81, 83, 95, 529
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	710
BspDI	ATCGAT	1 cut(s)	417
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	2 cut(s)	237, 298
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	2 cut(s)	156, 643
BspT104I	TTCGAA	1 cut(s)	619
BspT107I	GGYRCC	2 cut(s)	235, 296
BsrBI	CCGCTC	1 cut(s)	531
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	2 cut(s)	81, 754
BssMI	GATC	6 cut(s)	148, 313, 324, 414, 455, 648
BssNI	GRCGYC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	754
Bst2UI	CCWGG	2 cut(s)	353, 564
Bst4CI	ACNGT	7 cut(s)	201, 268, 296, 331, 360, 433, 446
BstACI	GRCGYC	1 cut(s)	137
BstBAI	YACGTR	2 cut(s)	232, 427
BstBI	TTCGAA	1 cut(s)	619
BstDEI	CTNAG	3 cut(s)	643, 680, 697
BstDSI	CCRYGG	1 cut(s)	81
BstEII	GGTNACC	1 cut(s)	262
BstFNI	CGCG	1 cut(s)	83
BstKTI	GATC	6 cut(s)	151, 316, 327, 417, 458, 651
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	6 cut(s)	148, 313, 324, 414, 455, 648
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 136, 224, 233
BstNI	CCWGG	2 cut(s)	353, 564
BstPI	GGTNACC	1 cut(s)	262
BstSCI	CCNGG	2 cut(s)	351, 562
BstSFI	CTRYAG	3 cut(s)	166, 219, 390
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	2 cut(s)	313, 648
BstXI	CCANNNNNNTGG	1 cut(s)	683
BstYI	RGATCY	2 cut(s)	313, 648
Bsu15I	ATCGAT	1 cut(s)	417
BsuRI	GGCC	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	417
BtgI	CCRYGG	1 cut(s)	81
BtsIMutI	CAGTG	2 cut(s)	206, 515
BveI	ACCTGC	1 cut(s)	121
Cfr42I	CCGCGG	1 cut(s)	84
ClaI	ATCGAT	1 cut(s)	417
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	2 cut(s)	371, 459
CviJI	RGCY	7 cut(s)	47, 174, 205, 218, 254, 279, 545
CviKI_1	RGCY	7 cut(s)	47, 174, 205, 218, 254, 279, 545
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	3 cut(s)	643, 680, 697
DpnI	GATC	6 cut(s)	150, 315, 326, 416, 457, 650
DpnII	GATC	6 cut(s)	148, 313, 324, 414, 455, 648
DriI	GACNNNNNGTC	1 cut(s)	280
Eam1105I	GACNNNNNGTC	1 cut(s)	280
Eco130I	CCWWGG	1 cut(s)	754
Eco91I	GGTNACC	1 cut(s)	262
EcoO65I	GGTNACC	1 cut(s)	262
EcoRII	CCWGG	2 cut(s)	351, 562
EcoT14I	CCWWGG	1 cut(s)	754
EcoT22I	ATGCAT	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	2 cut(s)	374, 462
FaiI	YATR	6 cut(s)	38, 289, 372, 442, 460, 592
FaqI	GGGAC	3 cut(s)	176, 210, 287
FatI	CATG	2 cut(s)	370, 458
FauI	CCCGC	1 cut(s)	536
Fnu4HI	GCNGC	2 cut(s)	81, 375
Fsp4HI	GCNGC	2 cut(s)	81, 375
FspBI	CTAG	3 cut(s)	539, 728, 769
GluI	GCNGC	2 cut(s)	81, 375
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	137
Hin1II	CATG	2 cut(s)	374, 462
HinfI	GANTC	6 cut(s)	21, 58, 64, 336, 573, 759
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	5 cut(s)	145, 256, 319, 596, 619
Hpy166II	GTNNAC	2 cut(s)	515, 587
Hpy188I	TCNGA	2 cut(s)	63, 700
Hpy188III	TCNNGA	3 cut(s)	652, 728, 745
Hpy8I	GTNNAC	2 cut(s)	515, 587
Hpy99I	CGWCG	4 cut(s)	106, 109, 145, 388
HpyAV	CCTTC	2 cut(s)	205, 503
HpyCH4III	ACNGT	7 cut(s)	201, 268, 296, 331, 360, 433, 446
HpyCH4IV	ACGT	3 cut(s)	231, 243, 426
HpyCH4V	TGCA	3 cut(s)	440, 462, 480
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 136, 224, 233
HpyF3I	CTNAG	3 cut(s)	643, 680, 697
HpySE526I	ACGT	3 cut(s)	231, 243, 426
Hsp92I	GRCGYC	1 cut(s)	137
Hsp92II	CATG	2 cut(s)	374, 462
KspI	CCGCGG	1 cut(s)	84
Kzo9I	GATC	6 cut(s)	148, 313, 324, 414, 455, 648
Lsp1109I	GCAGC	1 cut(s)	361
LweI	GCATC	2 cut(s)	214, 489
MaeI	CTAG	3 cut(s)	539, 728, 769
MaeII	ACGT	3 cut(s)	231, 243, 426
MaeIII	GTNAC	4 cut(s)	71, 133, 262, 427
MalI	GATC	6 cut(s)	150, 315, 326, 416, 457, 650
MbiI	CCGCTC	1 cut(s)	531
MboI	GATC	6 cut(s)	148, 313, 324, 414, 455, 648
MboII	GAAGA	2 cut(s)	582, 647
MflI	RGATCY	2 cut(s)	313, 648
MluCI	AATT	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	5 cut(s)	164, 201, 302, 590, 724
Mph1103I	ATGCAT	1 cut(s)	482
MseI	TTAA	3 cut(s)	318, 452, 672
MslI	CAYNNNNRTG	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	353, 564
Mva1269I	GAATGC	1 cut(s)	482
MvaI	CCWGG	2 cut(s)	353, 564
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	4 cut(s)	86, 136, 224, 233
NdeII	GATC	6 cut(s)	148, 313, 324, 414, 455, 648
NlaIII	CATG	2 cut(s)	374, 462
NlaIV	GGNNCC	2 cut(s)	237, 298
NmuCI	GTSAC	3 cut(s)	133, 262, 427
NsiI	ATGCAT	1 cut(s)	482
NspV	TTCGAA	1 cut(s)	619
OliI	CACNNNNGTG	1 cut(s)	681
PaqCI	CACCTGC	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	423
PctI	GAATGC	1 cut(s)	482
PfeI	GAWTC	6 cut(s)	21, 58, 64, 336, 573, 759
PflFI	GACNNNGTC	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	82, 376
Ppu21I	YACGTR	2 cut(s)	232, 427
Psp1406I	AACGTT	1 cut(s)	243
Psp6I	CCWGG	2 cut(s)	351, 562
PspEI	GGTNACC	1 cut(s)	262
PspGI	CCWGG	2 cut(s)	351, 562
PspN4I	GGNNCC	2 cut(s)	237, 298
PsuI	RGATCY	2 cut(s)	313, 648
PsyI	GACNNNGTC	1 cut(s)	139
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	681
SacII	CCGCGG	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	318, 452, 672
SatI	GCNGC	2 cut(s)	81, 375
Sau3AI	GATC	6 cut(s)	148, 313, 324, 414, 455, 648
ScrFI	CCNGG	2 cut(s)	353, 564
SfaNI	GCATC	2 cut(s)	214, 489
SfcI	CTRYAG	3 cut(s)	166, 219, 390
Sfr303I	CCGCGG	1 cut(s)	84
SfuI	TTCGAA	1 cut(s)	619
SgrBI	CCGCGG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	681
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	4 cut(s)	81, 83, 95, 529
SspMI	CTAG	3 cut(s)	539, 728, 769
StyD4I	CCNGG	2 cut(s)	351, 562
StyI	CCWWGG	1 cut(s)	754
TaaI	ACNGT	7 cut(s)	201, 268, 296, 331, 360, 433, 446
TaiI	ACGT	3 cut(s)	234, 246, 429
TaqI	TCGA	5 cut(s)	56, 417, 468, 522, 619
TasI	AATT	1 cut(s)	186
TauI	GCSGC	1 cut(s)	83
TfiI	GAWTC	6 cut(s)	21, 58, 64, 336, 573, 759
Tru1I	TTAA	3 cut(s)	318, 452, 672
Tru9I	TTAA	3 cut(s)	318, 452, 672
TscAI	CASTG	2 cut(s)	206, 522
TseFI	GTSAC	3 cut(s)	133, 262, 427
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	3 cut(s)	133, 262, 427
TspDTI	ATGAA	3 cut(s)	42, 359, 648
TspGWI	ACGGA	1 cut(s)	122
TspRI	CASTG	2 cut(s)	206, 522
Tth111I	GACNNNGTC	1 cut(s)	139
XbaI	TCTAGA	1 cut(s)	727
XspI	CTAG	3 cut(s)	539, 728, 769
Zsp2I	ATGCAT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.