Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0011892

Physical Location & Seq

Genomic Coordinates Reverse (-)

28415128 .. 28418552

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1140000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAAAGCCCCACCCGACTCGCCCACCTCGCTCTCTCCTCCATTTCCAGCTCCCACTCCCAAGCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTCCTCTCCAATGGCAGCAATAGCTCGCGTCTCCAGGAGAGCCTTAACCTCCTTCTCCAGCTCAGCCCAGCCATCCGCCTTCCACCGCACCTTCTCCGCCGAAGCAGCAAAAGCCGCGGCAATAACACCCTCGCCGGATCGGGTCAAGTGGGACTACAGAGGCCAGAGAAGGATAATTCCACTCGGCCAGTGGCTCCCGAAGATCGCCGTCGACGCATACGTGGCACCCAACGTGGTATTGGCGGGTCAGGTCACGGTCTGCGACGGAGCATCCGTTTGGCCCGGGTCGGTCCTCCGCGGGGATCTCAATAAGATCACCGTTGGATTCTGCTCCAATGTTCAGGAACGATGTGTCCTCCACGCCGCTTGGTCTTCACCCACAGGACTTCCAGCAGAGACATCCATTGAGAGGTTCGTGACTATTGGCGCATACAGTCTGTTGCGGTCCTGCACGATTGAGCCAGAATGCATTATCGGGCAACATTCAATCCTAATGGAAGGTTCCTTGGTGGAGACCCACGCTATTCTTGAAGCTGGATCTGTAGTTCCCCCAGGGAGGAGAATTCCAACTGGTGAACTTTGGGCTGGAAACCCGGCAAGGTTTGTCCGAACTCTGACACATGAAGAGACCTTGGAGATCCCCAAACTCGCGGTGGCGATAAATGATTTAAGCAAAGAATATTTCCAAGAATTCCTCCCTTACTCCACGGTATATTTGGAGGTTGAAAAGTTCAAGAAGTCTTTGGGGATTTCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009853 GO:0009987 GO:0010033 GO:0010228 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070469 GO:0097305 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

288

Amino Acids

30.95

Weight (kDa)

8.52

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48680 AT5G63510 AT5G63510
fragaria_vesca	FvH4_5g08540
malus_domestica	MD06G1140000.v1.1 MD14G1155400.v1.1
prunus_persica	Prupe.5G149300_v2.0.a1
pyrus_communis	pycom06g13030 pycom14g12910
rosa_chinensis	RchiOBHm_Chr7g0189861
rosa_laevigata	RLG00000004581
rosa_multiflora	Rmu_sc0000512.1_g000019
rosa_roxburghii	Rroxscaffold_3G00265080
rosa_rugosa	Rorug06G0500300
rosa_samantha	Rh7AG105700 Rh7BG108500 Rh7CG110500 Rh7DG108800
rosa_wichuraiana	Rw7G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	315
AccII	CGCG	4 cut(s)	132, 221, 402, 755
AclWI	GGATC	4 cut(s)	249, 414, 649, 736
AcoI	YGGCCR	1 cut(s)	289
AcsI	RAATTY	2 cut(s)	666, 794
AfiI	CCNNNNNNNGG	3 cut(s)	403, 513, 660
AgsI	TTSAA	4 cut(s)	591, 635, 830, 838
AjnI	CCWGG	2 cut(s)	137, 655
AloI	GAACNNNNNNTCC	4 cut(s)	441, 473, 633, 665
AluBI	AGCT	4 cut(s)	50, 128, 165, 638
AluI	AGCT	4 cut(s)	50, 128, 165, 638
Alw26I	GTCTC	4 cut(s)	139, 494, 611, 725
AlwI	GGATC	4 cut(s)	249, 414, 649, 736
Ama87I	CYCGRG	1 cut(s)	386
AoxI	GGCC	3 cut(s)	265, 289, 383
ApeKI	GCWGC	2 cut(s)	119, 209
ApoI	RAATTY	2 cut(s)	666, 794
AspLEI	GCGC	1 cut(s)	533
AspS9I	GGNCC	3 cut(s)	384, 394, 549
AsuC2I	CCSGG	3 cut(s)	387, 388, 698
AsuHPI	GGTGA	3 cut(s)	412, 471, 689
AvaI	CYCGRG	1 cut(s)	386
AvaII	GGWCC	2 cut(s)	394, 549
BanI	GGYRCC	1 cut(s)	328
BbsI	GAAGAC	1 cut(s)	468
BbvI	GCAGC	2 cut(s)	131, 221
BccI	CCATC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	296
BciT130I	CCWGG	2 cut(s)	139, 657
BcnI	CCSGG	3 cut(s)	387, 388, 698
BcoDI	GTCTC	4 cut(s)	139, 494, 611, 725
BfmI	CTRYAG	2 cut(s)	259, 645
BisI	GCNGC	5 cut(s)	120, 210, 219, 222, 468
BlpI	GCTNAGC	1 cut(s)	166
BlsI	GCNGC	5 cut(s)	121, 211, 220, 223, 469
Bme1390I	CCNGG	5 cut(s)	139, 387, 388, 657, 698
Bme18I	GGWCC	2 cut(s)	394, 549
BmeT110I	CYCGRG	1 cut(s)	386
BmgT120I	GGNCC	3 cut(s)	384, 394, 549
BmiI	GGNNCC	3 cut(s)	299, 330, 607
BmrFI	CCNGG	5 cut(s)	139, 387, 388, 657, 698
BmsI	GCATC	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	468
BpmI	CTGGAG	2 cut(s)	121, 145
Bpu1102I	GCTNAGC	1 cut(s)	166
BpuMI	CCSGG	3 cut(s)	387, 388, 698
BsaAI	YACGTR	1 cut(s)	325
BsaI	GGTCTC	2 cut(s)	611, 725
BsaJI	CCNNGG	8 cut(s)	219, 386, 400, 609, 655, 656, 735, 810
BsaXI	ACNNNNNCTCC	2 cut(s)	363, 393
Bsc4I	CCNNNNNNNGG	3 cut(s)	403, 513, 660
Bse1I	ACTGG	2 cut(s)	292, 679
BseBI	CCWGG	2 cut(s)	139, 657
BseDI	CCNNGG	8 cut(s)	219, 386, 400, 609, 655, 656, 735, 810
BseGI	GGATG	3 cut(s)	176, 374, 503
BseLI	CCNNNNNNNGG	3 cut(s)	403, 513, 660
BseMII	CTCAG	1 cut(s)	180
BseNI	ACTGG	2 cut(s)	292, 679
BseRI	GAGGAG	3 cut(s)	27, 97, 676
BseXI	GCAGC	2 cut(s)	131, 221
BseYI	CCCAGC	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	538
Bsh1236I	CGCG	4 cut(s)	132, 221, 402, 755
BshFI	GGCC	3 cut(s)	267, 291, 385
BshNI	GGYRCC	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	386
BsiSI	CCGG	3 cut(s)	239, 387, 698
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	3 cut(s)	403, 513, 660
BsmAI	GTCTC	4 cut(s)	139, 494, 611, 725
BsmBI	CGTCTC	1 cut(s)	139
BsmFI	GGGAC	1 cut(s)	269
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	3 cut(s)	267, 291, 385
Bso31I	GGTCTC	2 cut(s)	611, 725
BsoBI	CYCGRG	1 cut(s)	386
Bsp143I	GATC	6 cut(s)	241, 306, 406, 417, 641, 741
Bsp1720I	GCTNAGC	1 cut(s)	166
BspANI	GGCC	3 cut(s)	267, 291, 385
BspCNI	CTCAG	1 cut(s)	179
BspFNI	CGCG	4 cut(s)	132, 221, 402, 755
BspLI	GGNNCC	3 cut(s)	299, 330, 607
BspPI	GGATC	4 cut(s)	249, 414, 649, 736
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	2 cut(s)	611, 725
BsrI	ACTGG	2 cut(s)	292, 679
BssECI	CCNNGG	8 cut(s)	219, 386, 400, 609, 655, 656, 735, 810
BssMI	GATC	6 cut(s)	241, 306, 406, 417, 641, 741
BssT1I	CCWWGG	2 cut(s)	609, 735
Bst2UI	CCWGG	2 cut(s)	139, 657
Bst4CI	ACNGT	4 cut(s)	361, 424, 539, 814
Bst6I	CTCTTC	1 cut(s)	723
BstBAI	YACGTR	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	1 cut(s)	166
BstDSI	CCRYGG	3 cut(s)	219, 400, 810
BstF5I	GGATG	3 cut(s)	176, 374, 503
BstFNI	CGCG	4 cut(s)	132, 221, 402, 755
BstHHI	GCGC	1 cut(s)	533
BstKTI	GATC	6 cut(s)	244, 309, 409, 420, 644, 744
BstMAI	GTCTC	4 cut(s)	139, 494, 611, 725
BstMBI	GATC	6 cut(s)	241, 306, 406, 417, 641, 741
BstMWI	GCNNNNNNNGC	7 cut(s)	28, 125, 209, 215, 218, 317, 326
BstNI	CCWGG	2 cut(s)	139, 657
BstSCI	CCNGG	5 cut(s)	137, 385, 386, 655, 696
BstSFI	CTRYAG	2 cut(s)	259, 645
BstUI	CGCG	4 cut(s)	132, 221, 402, 755
BstV1I	GCAGC	2 cut(s)	131, 221
BstV2I	GAAGAC	1 cut(s)	468
BstX2I	RGATCY	3 cut(s)	406, 641, 741
BstYI	RGATCY	3 cut(s)	406, 641, 741
BsuRI	GGCC	3 cut(s)	267, 291, 385
BtgI	CCRYGG	3 cut(s)	219, 400, 810
BtsCI	GGATG	3 cut(s)	176, 374, 503
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	533
Cfr13I	GGNCC	3 cut(s)	384, 394, 549
Cfr42I	CCGCGG	2 cut(s)	222, 403
Cfr9I	CCCGGG	1 cut(s)	386
CseI	GACGC	2 cut(s)	121, 326
CspCI	CAANNNNNGTGG	2 cut(s)	452, 487
CviAII	CATG	1 cut(s)	725
DdeI	CTNAG	1 cut(s)	166
DpnI	GATC	6 cut(s)	243, 308, 408, 419, 643, 743
DpnII	GATC	6 cut(s)	241, 306, 406, 417, 641, 741
EaeI	YGGCCR	1 cut(s)	289
Eam1104I	CTCTTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	723
EciI	GGCGGA	2 cut(s)	169, 190
Eco130I	CCWWGG	2 cut(s)	609, 735
Eco31I	GGTCTC	2 cut(s)	611, 725
Eco47I	GGWCC	2 cut(s)	394, 549
Eco88I	CYCGRG	1 cut(s)	386
EcoRI	GAATTC	2 cut(s)	666, 794
EcoRII	CCWGG	2 cut(s)	137, 655
EcoT14I	CCWWGG	2 cut(s)	609, 735
EcoT22I	ATGCAT	1 cut(s)	575
ErhI	CCWWGG	2 cut(s)	609, 735
Esp3I	CGTCTC	1 cut(s)	139
FaeI	CATG	1 cut(s)	728
FaiI	YATR	4 cut(s)	322, 535, 726, 817
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	1 cut(s)	724
FauI	CCCGC	2 cut(s)	340, 395
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	5 cut(s)	120, 210, 219, 222, 468
FokI	GGATG	3 cut(s)	163, 361, 490
Fsp4HI	GCNGC	5 cut(s)	120, 210, 219, 222, 468
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	5 cut(s)	120, 210, 219, 222, 468
GsaI	CCCAGC	1 cut(s)	175
GsuI	CTGGAG	2 cut(s)	121, 145
HaeIII	GGCC	3 cut(s)	267, 291, 385
HapII	CCGG	3 cut(s)	239, 387, 698
HgaI	GACGC	2 cut(s)	121, 326
HhaI	GCGC	1 cut(s)	533
Hin1II	CATG	1 cut(s)	728
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HinfI	GANTC	2 cut(s)	17, 429
HpaII	CCGG	3 cut(s)	239, 387, 698
HphI	GGTGA	3 cut(s)	412, 471, 689
Hpy166II	GTNNAC	2 cut(s)	316, 680
Hpy188I	TCNGA	2 cut(s)	713, 720
Hpy188III	TCNNGA	5 cut(s)	301, 446, 520, 632, 838
Hpy8I	GTNNAC	2 cut(s)	316, 680
Hpy99I	CGWCG	3 cut(s)	317, 320, 371
HpyAV	CCTTC	5 cut(s)	166, 193, 205, 267, 596
HpyCH4III	ACNGT	4 cut(s)	361, 424, 539, 814
HpyCH4IV	ACGT	2 cut(s)	324, 336
HpyCH4V	TGCA	2 cut(s)	555, 573
HpyF10VI	GCNNNNNNNGC	7 cut(s)	28, 125, 209, 215, 218, 317, 326
HpyF3I	CTNAG	1 cut(s)	166
HpySE526I	ACGT	2 cut(s)	324, 336
Hsp92II	CATG	1 cut(s)	728
HspAI	GCGC	1 cut(s)	531
KspI	CCGCGG	2 cut(s)	222, 403
Kzo9I	GATC	6 cut(s)	241, 306, 406, 417, 641, 741
LmnI	GCTCC	5 cut(s)	55, 110, 303, 371, 440
Lsp1109I	GCAGC	2 cut(s)	131, 221
LweI	GCATC	1 cut(s)	383
MaeII	ACGT	2 cut(s)	324, 336
MaeIII	GTNAC	2 cut(s)	355, 520
MalI	GATC	6 cut(s)	243, 308, 408, 419, 643, 743
MboI	GATC	6 cut(s)	241, 306, 406, 417, 641, 741
MboII	GAAGA	3 cut(s)	316, 468, 740
MflI	RGATCY	3 cut(s)	406, 641, 741
MluCI	AATT	3 cut(s)	279, 666, 794
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	2 cut(s)	406, 695
Mph1103I	ATGCAT	1 cut(s)	575
MseI	TTAA	2 cut(s)	149, 773
MspA1I	CMGCKG	2 cut(s)	221, 402
MspI	CCGG	3 cut(s)	239, 387, 698
MspR9I	CCNGG	5 cut(s)	139, 387, 388, 657, 698
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	2 cut(s)	139, 657
MvnI	CGCG	4 cut(s)	132, 221, 402, 755
MwoI	GCNNNNNNNGC	7 cut(s)	28, 125, 209, 215, 218, 317, 326
NciI	CCSGG	3 cut(s)	387, 388, 698
NdeII	GATC	6 cut(s)	241, 306, 406, 417, 641, 741
NlaIII	CATG	1 cut(s)	728
NlaIV	GGNNCC	3 cut(s)	299, 330, 607
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	2 cut(s)	355, 520
NsiI	ATGCAT	1 cut(s)	575
PasI	CCCWGGG	1 cut(s)	656
PcsI	WCGNNNNNNNCGW	2 cut(s)	321, 375
PctI	GAATGC	1 cut(s)	575
PfeI	GAWTC	1 cut(s)	429
PfoI	TCCNGGA	1 cut(s)	137
PkrI	GCNGC	5 cut(s)	121, 211, 220, 223, 469
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
Ppu21I	YACGTR	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	137, 655
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	2 cut(s)	137, 655
PspN4I	GGNNCC	3 cut(s)	299, 330, 607
PspPI	GGNCC	3 cut(s)	384, 394, 549
PsuI	RGATCY	3 cut(s)	406, 641, 741
SacII	CCGCGG	2 cut(s)	222, 403
SalI	GTCGAC	1 cut(s)	314
SaqAI	TTAA	2 cut(s)	149, 773
SatI	GCNGC	5 cut(s)	120, 210, 219, 222, 468
Sau3AI	GATC	6 cut(s)	241, 306, 406, 417, 641, 741
Sau96I	GGNCC	3 cut(s)	384, 394, 549
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	5 cut(s)	139, 387, 388, 657, 698
SfaNI	GCATC	1 cut(s)	383
SfcI	CTRYAG	2 cut(s)	259, 645
Sfr303I	CCGCGG	2 cut(s)	222, 403
SgrBI	CCGCGG	2 cut(s)	222, 403
SgrDI	CGTCGACG	1 cut(s)	314
SinI	GGWCC	2 cut(s)	394, 549
SmaI	CCCGGG	1 cut(s)	388
Sse9I	AATT	3 cut(s)	279, 666, 794
SspI	AATATT	1 cut(s)	785
StyD4I	CCNGG	5 cut(s)	137, 385, 386, 655, 696
StyI	CCWWGG	2 cut(s)	609, 735
TaaI	ACNGT	4 cut(s)	361, 424, 539, 814
TaiI	ACGT	2 cut(s)	327, 339
TaqI	TCGA	1 cut(s)	315
TaqII	GACCGA	1 cut(s)	382
TasI	AATT	3 cut(s)	279, 666, 794
TauI	GCSGC	3 cut(s)	221, 224, 470
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	2 cut(s)	149, 773
Tru9I	TTAA	2 cut(s)	149, 773
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	2 cut(s)	355, 520
TseI	GCWGC	2 cut(s)	119, 209
Tsp45I	GTSAC	2 cut(s)	355, 520
TspDTI	ATGAA	2 cut(s)	17, 741
TspGWI	ACGGA	2 cut(s)	367, 384
TspMI	CCCGGG	1 cut(s)	386
TspRI	CASTG	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	394, 549
XapI	RAATTY	2 cut(s)	666, 794
XcmI	CCANNNNNNNNNTGG	4 cut(s)	291, 340, 754, 817
XmaI	CCCGGG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	315
Zsp2I	ATGCAT	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.