AT5G63510

Gamma carbonic anhydrase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011892
Physical Location & Seq
Forward (+)
25423967 .. 25425871
1905 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63510.1

Sequence Viewer

Length: 759 bp
ATGGCGACTTCGATAGCTCGATTGTCTCGGAGAGGAGTCACTTCTAACCTGATCCGTCGTTGCTTCGCTGCGGAAGCGGCGTTGGCGAGGAAGACAGAGTTACCTAAACCGCAATTCACGGTGTCGCCGTCGACGGATCGTGTGAAATGGGACTACAGAGGCCAACGACAGATCATTCCTTTGGGACAGTGGCTTCCGAAGGTAGCCGTTGATGCTTACGTGGCACCCAACGTTGTGCTGGCTGGTCAGGTCACAGTCTGGGACGGCTCGTCTGTTTGGAACGGTGCCGTTTTGCGCGGCGATCTCAACAAAATCACTGTTGGATTCTGCTCGAATGTACAGGAACGGTGTGTTGTTCATGCCGCCTGGTCTTCCCCAACAGGATTACCAGCAGCGACAATAATCGACAGGTATGTGACAGTAGGTGCCTACAGTCTTCTGAGATCATGTACCATCGAACCAGAGTGCATCATCGGTCAACACTCAATACTAATGGAAGGCTCACTGGTTGAGACCCGGTCAATCTTGGAAGCGGGTTCAGTTGTGCCGCCAGGAAGAAGGATCCCATCAGGTGAACTATGGGGAGGCAATCCAGCAAGATTCATTAGAACCCTAACCAACGAAGAAACCCTAGAGATCCCAAAACTCGCTGTAGCCATCAACCACTTAAGCGGAGATTACTTCTCTGAGTTCCTACCTTACTCAACTGTCTACTTAGAGGTAGAGAAGTTCAAGAAGTCCCTTGGGATCGCCGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hexapep

Protein Analysis

252

Amino Acids

27.57

Weight (kDa)

9.01

Isoelectric Point (pI)

42.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011892)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G48680 AT5G63510 AT5G63510
fragaria_vesca FvH4_5g08540
malus_domestica MD06G1140000.v1.1 MD14G1155400.v1.1
prunus_persica Prupe.5G149300_v2.0.a1
pyrus_communis pycom06g13030 pycom14g12910
rosa_chinensis RchiOBHm_Chr7g0189861
rosa_laevigata RLG00000004581
rosa_multiflora Rmu_sc0000512.1_g000019
rosa_roxburghii Rroxscaffold_3G00265080
rosa_rugosa Rorug06G0500300
rosa_samantha Rh7AG105700 Rh7BG108500 Rh7CG110500 Rh7DG108800
rosa_wichuraiana Rw7G009160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 223, 284, 425
AccI GTMKAC 2 cut(s) 131, 711
AccII CGCG 1 cut(s) 297
AciI CCGC 8 cut(s) 71, 77, 110, 297, 363, 533, 548, 672
AclI AACGTT 1 cut(s) 231
AclWI GGATC 6 cut(s) 46, 144, 556, 569, 631, 755
AfaI GTAC 2 cut(s) 339, 451
AflII CTTAAG 1 cut(s) 667
AgsI TTSAA 1 cut(s) 733
AhdI GACNNNNNGTC 1 cut(s) 268
AjnI CCWGG 2 cut(s) 365, 550
AluBI AGCT 1 cut(s) 17
AluI AGCT 1 cut(s) 17
Alw26I GTCTC 2 cut(s) 30, 506
AlwI GGATC 6 cut(s) 46, 144, 556, 569, 631, 755
AoxI GGCC 1 cut(s) 160
ApeKI GCWGC 2 cut(s) 68, 392
AspLEI GCGC 1 cut(s) 297
AsuC2I CCSGG 1 cut(s) 517
AsuHPI GGTGA 1 cut(s) 584
BamHI GGATCC 1 cut(s) 561
BanI GGYRCC 3 cut(s) 223, 284, 425
BbsI GAAGAC 3 cut(s) 98, 363, 428
BbvI GCAGC 2 cut(s) 55, 404
BccI CCATC 3 cut(s) 461, 574, 665
BceAI ACGGC 5 cut(s) 112, 191, 272, 280, 737
BciT130I CCWGG 2 cut(s) 367, 552
BcnI CCSGG 1 cut(s) 517
BcoDI GTCTC 2 cut(s) 30, 506
BfaI CTAG 1 cut(s) 632
BfmI CTRYAG 3 cut(s) 154, 430, 651
BfrI CTTAAG 1 cut(s) 667
BisI GCNGC 6 cut(s) 69, 78, 298, 363, 393, 548
BlsI GCNGC 6 cut(s) 70, 79, 299, 364, 394, 549
Bme1390I CCNGG 3 cut(s) 367, 517, 552
BmeRI GACNNNNNGTC 1 cut(s) 268
BmiI GGNNCC 4 cut(s) 225, 286, 427, 563
BmrFI CCNGG 3 cut(s) 367, 517, 552
BmsI GCATC 2 cut(s) 202, 477
BpiI GAAGAC 3 cut(s) 98, 363, 428
BpuMI CCSGG 1 cut(s) 517
BsaAI YACGTR 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 742
Bse1I ACTGG 1 cut(s) 510
BseBI CCWGG 2 cut(s) 367, 552
BseDI CCNNGG 1 cut(s) 742
BseMII CTCAG 2 cut(s) 431, 678
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 55, 404
Bsh1236I CGCG 1 cut(s) 297
BshFI GGCC 1 cut(s) 162
BshNI GGYRCC 3 cut(s) 223, 284, 425
BsiSI CCGG 1 cut(s) 517
BslFI GGGAC 4 cut(s) 164, 198, 275, 724
BsmAI GTCTC 2 cut(s) 30, 506
BsmFI GGGAC 4 cut(s) 164, 198, 275, 724
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 506
Bsp1407I TGTACA 1 cut(s) 337
Bsp143I GATC 8 cut(s) 51, 136, 171, 301, 443, 561, 636, 747
BspACI CCGC 8 cut(s) 71, 77, 110, 297, 363, 533, 548, 672
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 2 cut(s) 432, 679
BspFNI CGCG 1 cut(s) 297
BspLI GGNNCC 4 cut(s) 225, 286, 427, 563
BspPI GGATC 6 cut(s) 46, 144, 556, 569, 631, 755
BspT107I GGYRCC 3 cut(s) 223, 284, 425
BspTI CTTAAG 1 cut(s) 667
BspTNI GGTCTC 1 cut(s) 506
BsrGI TGTACA 1 cut(s) 337
BsrI ACTGG 1 cut(s) 510
BssECI CCNNGG 1 cut(s) 742
BssMI GATC 8 cut(s) 51, 136, 171, 301, 443, 561, 636, 747
BssT1I CCWWGG 1 cut(s) 742
Bst2UI CCWGG 2 cut(s) 367, 552
Bst4CI ACNGT 9 cut(s) 121, 189, 256, 284, 319, 348, 421, 434, 709
BstAFI CTTAAG 1 cut(s) 667
BstAUI TGTACA 1 cut(s) 337
BstBAI YACGTR 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 3 cut(s) 440, 687, 715
BstFNI CGCG 1 cut(s) 297
BstHHI GCGC 1 cut(s) 297
BstKTI GATC 8 cut(s) 54, 139, 174, 304, 446, 564, 639, 750
BstMAI GTCTC 2 cut(s) 30, 506
BstMBI GATC 8 cut(s) 51, 136, 171, 301, 443, 561, 636, 747
BstMWI GCNNNNNNNGC 5 cut(s) 74, 77, 83, 212, 221
BstNI CCWGG 2 cut(s) 367, 552
BstSCI CCNGG 3 cut(s) 365, 515, 550
BstSFI CTRYAG 3 cut(s) 154, 430, 651
BstUI CGCG 1 cut(s) 297
BstV1I GCAGC 2 cut(s) 55, 404
BstV2I GAAGAC 3 cut(s) 98, 363, 428
BstX2I RGATCY 2 cut(s) 561, 636
BstYI RGATCY 2 cut(s) 561, 636
BsuRI GGCC 1 cut(s) 162
BtsIMutI CAGTG 3 cut(s) 194, 315, 503
Cac8I GCNNGC 1 cut(s) 240
CfoI GCGC 1 cut(s) 297
Csp6I GTAC 2 cut(s) 338, 450
CviAII CATG 2 cut(s) 359, 447
CviJI RGCY 8 cut(s) 17, 162, 193, 206, 242, 267, 501, 656
CviKI_1 RGCY 8 cut(s) 17, 162, 193, 206, 242, 267, 501, 656
CviQI GTAC 2 cut(s) 338, 450
DdeI CTNAG 3 cut(s) 440, 687, 715
DpnI GATC 8 cut(s) 53, 138, 173, 303, 445, 563, 638, 749
DpnII GATC 8 cut(s) 51, 136, 171, 301, 443, 561, 636, 747
DriI GACNNNNNGTC 1 cut(s) 268
Eam1105I GACNNNNNGTC 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 742
Eco31I GGTCTC 1 cut(s) 506
EcoRII CCWGG 2 cut(s) 365, 550
EcoT14I CCWWGG 1 cut(s) 742
ErhI CCWWGG 1 cut(s) 742
FaeI CATG 2 cut(s) 362, 450
FaiI YATR 4 cut(s) 360, 414, 448, 580
FaqI GGGAC 4 cut(s) 164, 198, 275, 724
FatI CATG 2 cut(s) 358, 446
FauI CCCGC 1 cut(s) 526
FblI GTMKAC 2 cut(s) 131, 711
Fnu4HI GCNGC 6 cut(s) 69, 78, 298, 363, 393, 548
Fsp4HI GCNGC 6 cut(s) 69, 78, 298, 363, 393, 548
FspBI CTAG 1 cut(s) 632
GlaI GCGC 1 cut(s) 296
GluI GCNGC 6 cut(s) 69, 78, 298, 363, 393, 548
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 517
HhaI GCGC 1 cut(s) 297
Hin1II CATG 2 cut(s) 362, 450
Hin6I GCGC 1 cut(s) 295
HinP1I GCGC 1 cut(s) 295
HincII GTYRAC 2 cut(s) 132, 479
HindII GTYRAC 2 cut(s) 132, 479
HinfI GANTC 3 cut(s) 36, 324, 600
HpaII CCGG 1 cut(s) 517
HphI GGTGA 1 cut(s) 584
Hpy166II GTNNAC 4 cut(s) 132, 479, 575, 712
Hpy188I TCNGA 4 cut(s) 30, 198, 441, 688
Hpy188III TCNNGA 1 cut(s) 733
Hpy8I GTNNAC 4 cut(s) 132, 479, 575, 712
Hpy99I CGWCG 3 cut(s) 60, 133, 136
HpyAV CCTTC 3 cut(s) 193, 491, 552
HpyCH4III ACNGT 9 cut(s) 121, 189, 256, 284, 319, 348, 421, 434, 709
HpyCH4IV ACGT 2 cut(s) 219, 231
HpyCH4V TGCA 1 cut(s) 468
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 77, 83, 212, 221
HpyF3I CTNAG 3 cut(s) 440, 687, 715
HpySE526I ACGT 2 cut(s) 219, 231
Hsp92II CATG 2 cut(s) 362, 450
HspAI GCGC 1 cut(s) 295
Kzo9I GATC 8 cut(s) 51, 136, 171, 301, 443, 561, 636, 747
Lsp1109I GCAGC 2 cut(s) 55, 404
LweI GCATC 2 cut(s) 202, 477
MaeI CTAG 1 cut(s) 632
MaeII ACGT 2 cut(s) 219, 231
MaeIII GTNAC 4 cut(s) 37, 99, 250, 415
MalI GATC 8 cut(s) 53, 138, 173, 303, 445, 563, 638, 749
MboI GATC 8 cut(s) 51, 136, 171, 301, 443, 561, 636, 747
MboII GAAGA 5 cut(s) 103, 363, 428, 567, 635
MflI RGATCY 2 cut(s) 561, 636
MluCI AATT 1 cut(s) 113
MlyI GAGTC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 301
MnlI CCTC 5 cut(s) 26, 81, 152, 578, 712
MseI TTAA 1 cut(s) 668
MspCI CTTAAG 1 cut(s) 667
MspI CCGG 1 cut(s) 517
MspR9I CCNGG 3 cut(s) 367, 517, 552
MvaI CCWGG 2 cut(s) 367, 552
MvnI CGCG 1 cut(s) 297
MwoI GCNNNNNNNGC 5 cut(s) 74, 77, 83, 212, 221
NciI CCSGG 1 cut(s) 517
NdeII GATC 8 cut(s) 51, 136, 171, 301, 443, 561, 636, 747
NlaIII CATG 2 cut(s) 362, 450
NlaIV GGNNCC 4 cut(s) 225, 286, 427, 563
NmuCI GTSAC 3 cut(s) 37, 250, 415
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PfeI GAWTC 2 cut(s) 324, 600
PflFI GACNNNGTC 1 cut(s) 517
PkrI GCNGC 6 cut(s) 70, 79, 299, 364, 394, 549
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Ppu21I YACGTR 1 cut(s) 220
Psp1406I AACGTT 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 365, 550
PspGI CCWGG 2 cut(s) 365, 550
PspN4I GGNNCC 4 cut(s) 225, 286, 427, 563
PsuI RGATCY 2 cut(s) 561, 636
PsyI GACNNNGTC 1 cut(s) 517
RsaI GTAC 2 cut(s) 339, 451
RsaNI GTAC 2 cut(s) 338, 450
SalI GTCGAC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 6 cut(s) 69, 78, 298, 363, 393, 548
Sau3AI GATC 8 cut(s) 51, 136, 171, 301, 443, 561, 636, 747
SchI GAGTC 1 cut(s) 45
ScrFI CCNGG 3 cut(s) 367, 517, 552
SfaNI GCATC 2 cut(s) 202, 477
SfcI CTRYAG 3 cut(s) 154, 430, 651
SgrDI CGTCGACG 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
Sse9I AATT 1 cut(s) 113
SsiI CCGC 8 cut(s) 71, 77, 110, 297, 363, 533, 548, 672
SspMI CTAG 1 cut(s) 632
StyD4I CCNGG 3 cut(s) 365, 515, 550
StyI CCWWGG 1 cut(s) 742
TaaI ACNGT 9 cut(s) 121, 189, 256, 284, 319, 348, 421, 434, 709
TaiI ACGT 2 cut(s) 222, 234
TaqI TCGA 6 cut(s) 11, 19, 131, 332, 405, 456
TaqII GACCGA 1 cut(s) 464
TasI AATT 1 cut(s) 113
TatI WGTACW 1 cut(s) 337
TauI GCSGC 4 cut(s) 80, 300, 365, 550
TfiI GAWTC 2 cut(s) 324, 600
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TscAI CASTG 3 cut(s) 194, 322, 510
TseFI GTSAC 3 cut(s) 37, 250, 415
TseI GCWGC 2 cut(s) 68, 392
Tsp45I GTSAC 3 cut(s) 37, 250, 415
TspDTI ATGAA 2 cut(s) 347, 592
TspGWI ACGGA 2 cut(s) 44, 149
TspRI CASTG 3 cut(s) 194, 322, 510
Tth111I GACNNNGTC 1 cut(s) 517
Vha464I CTTAAG 1 cut(s) 667
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmiI GTMKAC 2 cut(s) 131, 711
XspI CTAG 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.