Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0011892

Physical Location & Seq

Genomic Coordinates Reverse (-)

8195100 .. 8199270

Gene Structure 4171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG108500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAAATCTCTCCTTCCCGGCCCAAAACCAAAGTTCGACGAAAACGAGATCTCCTCCGGCCCACAATCAAACCAAACCACTCTTTCGCTCCTCTCCATTTCCATCTCCCACTCCCAAACCCAGCTCTCTCTCTCTCTGCGCTCTCCAATGGCGGCTTTAGCTCGCATCTCGAGGCAAGCCCTGAGCTCCGTCGCCCCATCGTCCAAAGCTACCTTCCTCCACCGCGCGCTCGCCACCGAAGCCGCAAAAGCCATAACACCATCGTCGGATCGGGTCAAGTGGGACTACCGAGGCCAGCGAAAGATAATCCCACTGGGACAGTGGCTCCCCAAGATCGCCGTCGACGCCTTCGTCGCGCCCAACGTCGTCTTGGCCGGCCAGGTCACGGTCAACGACGGAGCCTCCGTCTGGCCCGGCTCGGTCCTCCGCGGCGATCTGAATAAGATCACCGTCGGCTTCTGCTCCAATGTTCAGGAACGGTGTGTGCTCCACGCCGCTTGGTCTTCCCCCACAGGACTTCCAGCGGATACATCCATTGAGAGGTTTGTGACTATTGGTGCATACAGTCTGTTGCGGTCCTGCACAGTTGAGCCAGAATGCATTATTGGGCAGCATTCCATTCTTATGGAAGGTTCCTTGGTGGAGACCCATTCTATCCTTGAAGCTGGGTCTGTGGTTCCCCCAGGGAGGAGAATTCCGACTGGTGAACTTTGGGCTGGAAATCCAGCAAGATTTGTCCGAACTCTGACCCATGAAGAGACCTTGGAGATCCCCAAACTTGCAGTTGCCATAAATGATCTGAGTAAAGAATATTTCCAGGAATACCTCCCTTACTCCACAGTATATTTGGAGGTTGAAAAGTTCAAGAAATCTTTGGGGATTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009853 GO:0009987 GO:0010033 GO:0010228 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070469 GO:0097305 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

296

Amino Acids

32.12

Weight (kDa)

8.63

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48680 AT5G63510 AT5G63510
fragaria_vesca	FvH4_5g08540
malus_domestica	MD06G1140000.v1.1 MD14G1155400.v1.1
prunus_persica	Prupe.5G149300_v2.0.a1
pyrus_communis	pycom06g13030 pycom14g12910
rosa_chinensis	RchiOBHm_Chr7g0189861
rosa_laevigata	RLG00000004581
rosa_multiflora	Rmu_sc0000512.1_g000019
rosa_roxburghii	Rroxscaffold_3G00265080
rosa_rugosa	Rorug06G0500300
rosa_samantha	Rh7AG105700 Rh7BG108500 Rh7CG110500 Rh7DG108800
rosa_wichuraiana	Rw7G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AccI	GTMKAC	1 cut(s)	342
AccII	CGCG	4 cut(s)	225, 227, 356, 429
AciI	CCGC	8 cut(s)	152, 223, 243, 427, 429, 495, 524, 574
AclWI	GGATC	2 cut(s)	276, 763
AcoI	YGGCCR	2 cut(s)	372, 376
AcsI	RAATTY	1 cut(s)	693
AcyI	GRCGYC	1 cut(s)	345
AfiI	CCNNNNNNNGG	4 cut(s)	385, 408, 540, 687
AgsI	TTSAA	3 cut(s)	662, 857, 865
AjnI	CCWGG	3 cut(s)	378, 682, 816
AjuI	GAANNNNNNNTTGG	4 cut(s)	197, 229, 588, 620
AluBI	AGCT	5 cut(s)	124, 161, 186, 209, 665
AluI	AGCT	5 cut(s)	124, 161, 186, 209, 665
Alw21I	GWGCWC	2 cut(s)	188, 489
Alw26I	GTCTC	2 cut(s)	638, 752
AlwI	GGATC	2 cut(s)	276, 763
Ama87I	CYCGRG	1 cut(s)	169
AoxI	GGCC	6 cut(s)	19, 58, 292, 372, 376, 410
ApeKI	GCWGC	1 cut(s)	610
ApoI	RAATTY	1 cut(s)	693
AspLEI	GCGC	4 cut(s)	141, 227, 229, 358
AspS9I	GGNCC	5 cut(s)	20, 59, 411, 421, 576
AsuC2I	CCSGG	2 cut(s)	18, 414
AsuHPI	GGTGA	2 cut(s)	439, 716
AvaI	CYCGRG	1 cut(s)	169
AvaII	GGWCC	2 cut(s)	421, 576
BanII	GRGCYC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	2 cut(s)	188, 489
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	3 cut(s)	110, 205, 268
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	3 cut(s)	380, 684, 818
BciVI	GTATCC	1 cut(s)	520
BcnI	CCSGG	2 cut(s)	18, 414
BcoDI	GTCTC	2 cut(s)	638, 752
BfuI	GTATCC	1 cut(s)	520
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	5 cut(s)	153, 243, 430, 495, 611
BlsI	GCNGC	5 cut(s)	154, 244, 431, 496, 612
Bme1390I	CCNGG	5 cut(s)	18, 380, 414, 684, 818
Bme18I	GGWCC	2 cut(s)	421, 576
BmeT110I	CYCGRG	1 cut(s)	169
BmgT120I	GGNCC	5 cut(s)	20, 59, 411, 421, 576
BmiI	GGNNCC	4 cut(s)	326, 400, 634, 678
BmrFI	CCNGG	5 cut(s)	18, 380, 414, 684, 818
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	174
BmuI	ACTGGG	1 cut(s)	323
BpiI	GAAGAC	1 cut(s)	495
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
Bpu10I	CCTNAGC	1 cut(s)	182
BpuMI	CCSGG	2 cut(s)	18, 414
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	2 cut(s)	638, 752
BsaJI	CCNNGG	6 cut(s)	289, 427, 636, 682, 683, 762
BsaXI	ACNNNNNCTCC	8 cut(s)	35, 65, 309, 339, 386, 390, 416, 420
Bsc4I	CCNNNNNNNGG	4 cut(s)	385, 408, 540, 687
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	318, 706
BseBI	CCWGG	3 cut(s)	380, 684, 818
BseDI	CCNNGG	6 cut(s)	289, 427, 636, 682, 683, 762
BseGI	GGATG	1 cut(s)	530
BseLI	CCNNNNNNNGG	4 cut(s)	385, 408, 540, 687
BseMII	CTCAG	2 cut(s)	173, 791
BseNI	ACTGG	2 cut(s)	318, 706
BsePI	GCGCGC	1 cut(s)	225
BseRI	GAGGAG	3 cut(s)	43, 80, 703
BseXI	GCAGC	1 cut(s)	622
BseYI	CCCAGC	2 cut(s)	120, 665
BsgI	GTGCAG	1 cut(s)	565
Bsh1236I	CGCG	4 cut(s)	225, 227, 356, 429
BshFI	GGCC	6 cut(s)	21, 60, 294, 374, 378, 412
BsiHKAI	GWGCWC	2 cut(s)	188, 489
BsiHKCI	CYCGRG	1 cut(s)	169
BsiSI	CCGG	4 cut(s)	18, 57, 375, 414
BslFI	GGGAC	2 cut(s)	296, 330
BslI	CCNNNNNNNGG	4 cut(s)	385, 408, 540, 687
BsmAI	GTCTC	2 cut(s)	638, 752
BsmFI	GGGAC	2 cut(s)	296, 330
BsmI	GAATGC	2 cut(s)	602, 613
BsnI	GGCC	6 cut(s)	21, 60, 294, 374, 378, 412
Bso31I	GGTCTC	2 cut(s)	638, 752
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	2 cut(s)	188, 489
Bsp143I	GATC	7 cut(s)	48, 268, 333, 433, 444, 768, 796
BspACI	CCGC	8 cut(s)	152, 223, 243, 427, 429, 495, 524, 574
BspANI	GGCC	6 cut(s)	21, 60, 294, 374, 378, 412
BspCNI	CTCAG	2 cut(s)	174, 792
BspFNI	CGCG	4 cut(s)	225, 227, 356, 429
BspLI	GGNNCC	4 cut(s)	326, 400, 634, 678
BspPI	GGATC	2 cut(s)	276, 763
BspTNI	GGTCTC	2 cut(s)	638, 752
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	318, 706
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	6 cut(s)	289, 427, 636, 682, 683, 762
BssHII	GCGCGC	1 cut(s)	225
BssMI	GATC	7 cut(s)	48, 268, 333, 433, 444, 768, 796
BssNI	GRCGYC	1 cut(s)	345
BssT1I	CCWWGG	2 cut(s)	636, 762
Bst2UI	CCWGG	3 cut(s)	380, 684, 818
Bst4CI	ACNGT	7 cut(s)	321, 388, 451, 480, 566, 586, 841
Bst6I	CTCTTC	1 cut(s)	750
BstACI	GRCGYC	1 cut(s)	345
BstC8I	GCNNGC	6 cut(s)	163, 177, 227, 231, 296, 376
BstDEI	CTNAG	2 cut(s)	182, 800
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	1 cut(s)	530
BstFNI	CGCG	4 cut(s)	225, 227, 356, 429
BstHHI	GCGC	4 cut(s)	141, 227, 229, 358
BstKTI	GATC	7 cut(s)	51, 271, 336, 436, 447, 771, 799
BstMAI	GTCTC	2 cut(s)	638, 752
BstMBI	GATC	7 cut(s)	48, 268, 333, 433, 444, 768, 796
BstMWI	GCNNNNNNNGC	5 cut(s)	158, 239, 248, 344, 353
BstNI	CCWGG	3 cut(s)	380, 684, 818
BstSCI	CCNGG	5 cut(s)	16, 378, 412, 682, 816
BstUI	CGCG	4 cut(s)	225, 227, 356, 429
BstV1I	GCAGC	1 cut(s)	622
BstV2I	GAAGAC	1 cut(s)	495
BstX2I	RGATCY	2 cut(s)	48, 768
BstXI	CCANNNNNNTGG	1 cut(s)	625
BstYI	RGATCY	2 cut(s)	48, 768
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	6 cut(s)	21, 60, 294, 374, 378, 412
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	1 cut(s)	530
BtsIMutI	CAGTG	2 cut(s)	311, 326
Cac8I	GCNNGC	6 cut(s)	163, 177, 227, 231, 296, 376
CfoI	GCGC	4 cut(s)	141, 227, 229, 358
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	5 cut(s)	20, 59, 411, 421, 576
Cfr42I	CCGCGG	1 cut(s)	430
CseI	GACGC	1 cut(s)	353
CspCI	CAANNNNNGTGG	2 cut(s)	479, 514
CviAII	CATG	1 cut(s)	752
DdeI	CTNAG	2 cut(s)	182, 800
DpnI	GATC	7 cut(s)	50, 270, 335, 435, 446, 770, 798
DpnII	GATC	7 cut(s)	48, 268, 333, 433, 444, 768, 796
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
EaeI	YGGCCR	2 cut(s)	372, 376
Eam1104I	CTCTTC	1 cut(s)	750
EarI	CTCTTC	1 cut(s)	750
Ecl136II	GAGCTC	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	636, 762
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	2 cut(s)	638, 752
Eco47I	GGWCC	2 cut(s)	421, 576
Eco53kI	GAGCTC	1 cut(s)	186
Eco88I	CYCGRG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	186
EcoRI	GAATTC	1 cut(s)	693
EcoRII	CCWGG	3 cut(s)	378, 682, 816
EcoT14I	CCWWGG	2 cut(s)	636, 762
EcoT22I	ATGCAT	1 cut(s)	602
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	2 cut(s)	636, 762
FaeI	CATG	1 cut(s)	755
FaiI	YATR	6 cut(s)	254, 562, 626, 753, 791, 844
FaqI	GGGAC	2 cut(s)	296, 330
FatI	CATG	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	342
Fnu4HI	GCNGC	5 cut(s)	153, 243, 430, 495, 611
FokI	GGATG	1 cut(s)	517
FriOI	GRGCYC	1 cut(s)	188
FseI	GGCCGGCC	1 cut(s)	378
Fsp4HI	GCNGC	5 cut(s)	153, 243, 430, 495, 611
GlaI	GCGC	4 cut(s)	140, 226, 228, 357
GluI	GCNGC	5 cut(s)	153, 243, 430, 495, 611
GsaI	CCCAGC	2 cut(s)	124, 669
HaeIII	GGCC	6 cut(s)	21, 60, 294, 374, 378, 412
HapII	CCGG	4 cut(s)	18, 57, 375, 414
HgaI	GACGC	1 cut(s)	353
HhaI	GCGC	4 cut(s)	141, 227, 229, 358
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	1 cut(s)	755
Hin6I	GCGC	4 cut(s)	139, 225, 227, 356
HinP1I	GCGC	4 cut(s)	139, 225, 227, 356
HincII	GTYRAC	2 cut(s)	343, 391
HindII	GTYRAC	2 cut(s)	343, 391
HpaII	CCGG	4 cut(s)	18, 57, 375, 414
HphI	GGTGA	2 cut(s)	439, 716
Hpy166II	GTNNAC	3 cut(s)	343, 391, 707
Hpy188I	TCNGA	6 cut(s)	268, 438, 699, 740, 747, 801
Hpy188III	TCNNGA	3 cut(s)	169, 473, 865
Hpy8I	GTNNAC	3 cut(s)	343, 391, 707
Hpy99I	CGWCG	9 cut(s)	41, 194, 268, 344, 347, 356, 368, 398, 455
HpyAV	CCTTC	4 cut(s)	23, 223, 358, 623
HpyCH4III	ACNGT	7 cut(s)	321, 388, 451, 480, 566, 586, 841
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	4 cut(s)	560, 582, 600, 782
HpyF10VI	GCNNNNNNNGC	5 cut(s)	158, 239, 248, 344, 353
HpyF3I	CTNAG	2 cut(s)	182, 800
HpySE526I	ACGT	1 cut(s)	363
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	1 cut(s)	755
HspAI	GCGC	4 cut(s)	139, 225, 227, 356
KroI	GCCGGC	1 cut(s)	374
KroNI	GCCGGC	1 cut(s)	376
KspI	CCGCGG	1 cut(s)	430
Kzo9I	GATC	7 cut(s)	48, 268, 333, 433, 444, 768, 796
LmnI	GCTCC	6 cut(s)	93, 191, 330, 398, 467, 492
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	1 cut(s)	174
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	382, 547
MalI	GATC	7 cut(s)	50, 270, 335, 435, 446, 770, 798
MboI	GATC	7 cut(s)	48, 268, 333, 433, 444, 768, 796
MboII	GAAGA	2 cut(s)	495, 767
MflI	RGATCY	2 cut(s)	48, 768
MhlI	GDGCHC	2 cut(s)	188, 489
MluCI	AATT	1 cut(s)	693
MmeI	TCCRAC	2 cut(s)	246, 722
Mph1103I	ATGCAT	1 cut(s)	602
MroNI	GCCGGC	1 cut(s)	374
MslI	CAYNNNNRTG	1 cut(s)	623
MspA1I	CMGCKG	2 cut(s)	429, 524
MspI	CCGG	4 cut(s)	18, 57, 375, 414
MspR9I	CCNGG	5 cut(s)	18, 380, 414, 684, 818
Mva1269I	GAATGC	2 cut(s)	602, 613
MvaI	CCWGG	3 cut(s)	380, 684, 818
MvnI	CGCG	4 cut(s)	225, 227, 356, 429
MwoI	GCNNNNNNNGC	5 cut(s)	158, 239, 248, 344, 353
NaeI	GCCGGC	1 cut(s)	376
NciI	CCSGG	2 cut(s)	18, 414
NdeII	GATC	7 cut(s)	48, 268, 333, 433, 444, 768, 796
NgoMIV	GCCGGC	1 cut(s)	374
NlaIII	CATG	1 cut(s)	755
NlaIV	GGNNCC	4 cut(s)	326, 400, 634, 678
NmuCI	GTSAC	2 cut(s)	382, 547
NsiI	ATGCAT	1 cut(s)	602
PaeR7I	CTCGAG	1 cut(s)	169
PasI	CCCWGGG	1 cut(s)	683
PauI	GCGCGC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 348, 360, 402
PctI	GAATGC	2 cut(s)	602, 613
PdiI	GCCGGC	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	816
PkrI	GCNGC	5 cut(s)	154, 244, 431, 496, 612
Psp124BI	GAGCTC	1 cut(s)	188
Psp6I	CCWGG	3 cut(s)	378, 682, 816
PspFI	CCCAGC	2 cut(s)	120, 665
PspGI	CCWGG	3 cut(s)	378, 682, 816
PspN4I	GGNNCC	4 cut(s)	326, 400, 634, 678
PspPI	GGNCC	5 cut(s)	20, 59, 411, 421, 576
PsuI	RGATCY	2 cut(s)	48, 768
PteI	GCGCGC	1 cut(s)	225
RigI	GGCCGGCC	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	623
SacI	GAGCTC	1 cut(s)	188
SacII	CCGCGG	1 cut(s)	430
SalI	GTCGAC	1 cut(s)	341
SatI	GCNGC	5 cut(s)	153, 243, 430, 495, 611
Sau3AI	GATC	7 cut(s)	48, 268, 333, 433, 444, 768, 796
Sau96I	GGNCC	5 cut(s)	20, 59, 411, 421, 576
ScrFI	CCNGG	5 cut(s)	18, 380, 414, 684, 818
SduI	GDGCHC	2 cut(s)	188, 489
SfaNI	GCATC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	169
Sfr303I	CCGCGG	1 cut(s)	430
SgrBI	CCGCGG	1 cut(s)	430
SgrDI	CGTCGACG	1 cut(s)	341
SinI	GGWCC	2 cut(s)	421, 576
SlaI	CTCGAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	693
SsiI	CCGC	8 cut(s)	152, 223, 243, 427, 429, 495, 524, 574
SspI	AATATT	1 cut(s)	812
SstI	GAGCTC	1 cut(s)	188
StyD4I	CCNGG	5 cut(s)	16, 378, 412, 682, 816
StyI	CCWWGG	2 cut(s)	636, 762
TaaI	ACNGT	7 cut(s)	321, 388, 451, 480, 566, 586, 841
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	3 cut(s)	36, 170, 342
TaqII	GACCGA	1 cut(s)	409
TasI	AATT	1 cut(s)	693
TauI	GCSGC	4 cut(s)	155, 245, 432, 497
TscAI	CASTG	2 cut(s)	318, 326
TseFI	GTSAC	2 cut(s)	382, 547
TseI	GCWGC	1 cut(s)	610
Tsp45I	GTSAC	2 cut(s)	382, 547
TspDTI	ATGAA	2 cut(s)	17, 768
TspGWI	ACGGA	3 cut(s)	178, 394, 411
TspRI	CASTG	2 cut(s)	318, 326
VpaK11BI	GGWCC	2 cut(s)	421, 576
XapI	RAATTY	1 cut(s)	693
XcmI	CCANNNNNNNNNTGG	3 cut(s)	318, 367, 844
XhoI	CTCGAG	1 cut(s)	169
XmiI	GTMKAC	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.