Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004428

Physical Location & Seq

Genomic Coordinates Forward (+)

61584060 .. 61588250

Gene Structure 4191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0500300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGATACCTCAAGACGAAAGCAATCGGGTTGCTACTGGTAATGTGATGGCTGGGGAAAGTGAGGAAGATGATTGCTTATCATTGGAGGGTGATCAGATACTTGATAGCTCTTGTTCATTCTCAGTGGCGAGTGAGTCAAGTAGCTTATGTTTAGAGGACTTCCTGGTGTATGAGACAACCTCTGAAGGAGTAACACTGAGTTCTATAGACATTGACAGGAACAGTTGTTTTGGTGATGTTACTAAGGTGGCTGATATAGGTGATTCAAAAATTGAGACAGAGATCACTACTGATCCACTTTCTTTCTCAGTGAGCCTTGGGGAAGAAACTGGTCATGGGTCTGACCCAATGTCATCTGATGTTGTTGTTCAATTGCCTGTGGAAGTAGGGGTCAAAGAAACAGTCAGCCGCAGTGTTTTTGAGGTAGAATATGTTCCACTTTGGGGGTTTACATCCTTGTGTGGGAGAAGACCAGAGATGGAAGATGCATTAGCAACTGTACCTCAGTTTTCAAAGATTCCAATTCAAATGCTGATAGGTGACCGAGTACTGGATGGCATGAGCAAGTGTATAAATCAGACTGTTCATTTCTTTGGAGTCTATGATGGTCATGGAGGCTCTCAGGTGGCAAATTATTGTCGTGATCGTATGCATTTGGCTTTGGCGGAGGAGATAGAATTTGTTAAGGAGGGCCTAGTTCACACAAGTATCAAAGATAATTGCCTAGAGCAATGGAATAAGGCATTTACCAACTGTTTTCTTAAGGTTGATGCTGAAGTTGGAGGGAAGGATAGTCTTGATCCTGTTGCCCCTGAAACAGTTGGTTCCACTGCTGTTGTGGCCCTTATTTGTTCGTCTCATATCATAGTGTCAAACTGTGGTGATTCAAGAGCAGTTCTGTGTCGTGGGAAAGAACCCATGGCATTGTCAGTGGATCATAAACCAAATCGAGAAGATGAATATGCAAGAATTGAGGCAGCTGGAGGCAAGGTCATACAATGGAATGGGCATCGTGTGTTTGGTGTTCTTGCTATGTCAAGGTCAATAGGCGATAGATATTTAAAACCATGGATCATTCCAGATCCAGAAGTGATGTTTATTCCTCGAACCAAAGATGATGAATGCCTCATTTTAGCCAGTGATGGTTTATGGGATGTTATGACGAATGAAGAAGCGTGTGACCTTGCTCGGAGACGAATACTCTTATGGCACAAGAAGAATGGTGTTACACTTCCACTGGAAAGAGGTGAGGGAATTGATCCTGCTGCTCAAGCAGCGGCGGAGTTCCTTTCCAGCCGTGCCCTTCAAAAAGGAAGTAAGGACAACATCACGGTGATTGTGATAGATTTGAAGGCTCAGAGGAAGTTTAAAAGCAAAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009853 GO:0009987 GO:0010033 GO:0010228 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070469 GO:0097305 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

460

Amino Acids

50.34

Weight (kDa)

4.72

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	152 - 443	1.5e-64	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15417 AT4G15417
fragaria_vesca	FvH4_5g08550 FvH4_6g42650
malus_domestica	MD09G1111700.v1.1 MD17G1102000.v1.1
prunus_persica	Prupe.3G213200_v2.0.a1
pyrus_communis	pycom09g03630 pycom17g09640
rosa_chinensis	RchiOBHm_Chr2g0158531 RchiOBHm_Chr7g0189841
rosa_laevigata	RLG00000004582 RLG00000021094
rosa_multiflora	Rmu_co8278635.1_g000001 Rmu_sc0000512.1_g000018 Rmu_sc0005896.1_g000003 Rmu_sc0005896.1_g000004 Rmu_sc0017496.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091270 Rroxscaffold_3G00265090
rosa_rugosa	Rorug02G0469800 Rorug06G0500300
rosa_samantha	Rh2AG535800 Rh2BG549000 Rh2CG519500 Rh2DG558700 Rh7AG105600 Rh7BG108400 Rh7CG110400 Rh7DG108700
rosa_wichuraiana	Rw2G044370 Rw7G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	409, 665, 1277, 1280
AclWI	GGATC	6 cut(s)	287, 794, 942, 1076, 1079, 1253
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	2 cut(s)	204, 795
AfaI	GTAC	2 cut(s)	501, 549
AfiI	CCNNNNNNNGG	3 cut(s)	443, 462, 550
AflII	CTTAAG	1 cut(s)	761
AgsI	TTSAA	7 cut(s)	267, 371, 513, 527, 888, 1307, 1351
AhdI	GACNNNNNGTC	1 cut(s)	349
AjnI	CCWGG	1 cut(s)	162
AluBI	AGCT	3 cut(s)	108, 144, 980
AluI	AGCT	3 cut(s)	108, 144, 980
Alw26I	GTCTC	4 cut(s)	167, 269, 861, 1186
AlwI	GGATC	6 cut(s)	287, 794, 942, 1076, 1079, 1253
AoxI	GGCC	2 cut(s)	691, 840
ApeKI	GCWGC	3 cut(s)	977, 1265, 1274
ApoI	RAATTY	1 cut(s)	677
ArsI	GACNNNNNNTTYG	2 cut(s)	387, 419
Asp700I	GAANNNNTTC	1 cut(s)	432
AspS9I	GGNCC	2 cut(s)	691, 841
AsuHPI	GGTGA	7 cut(s)	101, 245, 272, 551, 893, 1259, 1345
BaeGI	GKGCMC	1 cut(s)	1303
BaeI	ACNNNNGTAYC	2 cut(s)	691, 724
BbsI	GAAGAC	1 cut(s)	475
BbvI	GCAGC	3 cut(s)	989, 1252, 1286
BccI	CCATC	5 cut(s)	40, 472, 548, 599, 1136
BceAI	ACGGC	1 cut(s)	1281
BciT130I	CCWGG	1 cut(s)	164
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	4 cut(s)	167, 269, 861, 1186
BfaI	CTAG	2 cut(s)	695, 725
BfmI	CTRYAG	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	761
BisI	GCNGC	5 cut(s)	409, 978, 1266, 1275, 1278
BlsI	GCNGC	5 cut(s)	410, 979, 1267, 1276, 1279
BmcAI	AGTACT	1 cut(s)	549
Bme1390I	CCNGG	1 cut(s)	164
BmeRI	GACNNNNNGTC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	691, 841
BmiI	GGNNCC	1 cut(s)	826
BmrFI	CCNGG	1 cut(s)	164
BmsI	GCATC	3 cut(s)	475, 760, 1018
BpiI	GAAGAC	1 cut(s)	475
BplI	GAGNNNNNCTC	2 cut(s)	164, 196
BpmI	CTGGAG	1 cut(s)	1002
BpuEI	CTTGAG	1 cut(s)	1254
BsaJI	CCNNGG	3 cut(s)	316, 918, 1067
BsaXI	ACNNNNNCTCC	2 cut(s)	975, 1005
Bsc4I	CCNNNNNNNGG	3 cut(s)	443, 462, 550
Bse1I	ACTGG	5 cut(s)	40, 334, 555, 1137, 1242
Bse3DI	GCAATG	1 cut(s)	737
BseBI	CCWGG	1 cut(s)	164
BseDI	CCNNGG	3 cut(s)	316, 918, 1067
BseGI	GGATG	3 cut(s)	452, 559, 1159
BseLI	CCNNNNNNNGG	3 cut(s)	443, 462, 550
BseMI	GCAATG	1 cut(s)	737
BseMII	CTCAG	6 cut(s)	135, 188, 321, 518, 635, 1370
BseNI	ACTGG	5 cut(s)	40, 334, 555, 1137, 1242
BseRI	GAGGAG	1 cut(s)	683
BseSI	GKGCMC	1 cut(s)	1303
BseXI	GCAGC	3 cut(s)	989, 1252, 1286
BseYI	CCCAGC	1 cut(s)	50
BshFI	GGCC	2 cut(s)	693, 842
BslI	CCNNNNNNNGG	3 cut(s)	443, 462, 550
BsmAI	GTCTC	4 cut(s)	167, 269, 861, 1186
BsmBI	CGTCTC	2 cut(s)	861, 1186
BsmI	GAATGC	1 cut(s)	1127
BsnI	GGCC	2 cut(s)	693, 842
Bsp1286I	GDGCHC	1 cut(s)	1303
Bsp143I	GATC	9 cut(s)	91, 282, 292, 643, 799, 934, 1071, 1081, 1258
Bsp19I	CCATGG	2 cut(s)	918, 1067
BspACI	CCGC	4 cut(s)	409, 665, 1277, 1280
BspANI	GGCC	2 cut(s)	693, 842
BspCNI	CTCAG	6 cut(s)	134, 189, 320, 517, 634, 1369
BspLI	GGNNCC	1 cut(s)	826
BspPI	GGATC	6 cut(s)	287, 794, 942, 1076, 1079, 1253
BspTI	CTTAAG	1 cut(s)	761
BsrDI	GCAATG	1 cut(s)	737
BsrI	ACTGG	5 cut(s)	40, 334, 555, 1137, 1242
BssECI	CCNNGG	3 cut(s)	316, 918, 1067
BssMI	GATC	9 cut(s)	91, 282, 292, 643, 799, 934, 1071, 1081, 1258
BssT1I	CCWWGG	3 cut(s)	316, 918, 1067
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	8 cut(s)	224, 403, 499, 583, 755, 820, 878, 1333
BstAFI	CTTAAG	1 cut(s)	761
BstDEI	CTNAG	7 cut(s)	121, 197, 243, 307, 504, 621, 1356
BstDSI	CCRYGG	2 cut(s)	918, 1067
BstEII	GGTNACC	1 cut(s)	539
BstF5I	GGATG	3 cut(s)	452, 559, 1159
BstKTI	GATC	9 cut(s)	94, 285, 295, 646, 802, 937, 1074, 1084, 1261
BstMAI	GTCTC	4 cut(s)	167, 269, 861, 1186
BstMBI	GATC	9 cut(s)	91, 282, 292, 643, 799, 934, 1071, 1081, 1258
BstMWI	GCNNNNNNNGC	3 cut(s)	839, 1271, 1274
BstNI	CCWGG	1 cut(s)	164
BstPI	GGTNACC	1 cut(s)	539
BstSCI	CCNGG	1 cut(s)	162
BstSFI	CTRYAG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	1303
BstV1I	GCAGC	3 cut(s)	989, 1252, 1286
BstV2I	GAAGAC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	1081
BstYI	RGATCY	1 cut(s)	1081
BsuRI	GGCC	2 cut(s)	693, 842
BtgI	CCRYGG	2 cut(s)	918, 1067
BtsCI	GGATG	3 cut(s)	452, 559, 1159
BtsI	GCAGTG	2 cut(s)	418, 828
BtsIMutI	CAGTG	8 cut(s)	129, 194, 315, 418, 828, 936, 1144, 1235
Cfr13I	GGNCC	2 cut(s)	691, 841
Csp6I	GTAC	2 cut(s)	500, 548
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	6 cut(s)	335, 559, 611, 919, 1068, 1380
CviQI	GTAC	2 cut(s)	500, 548
DdeI	CTNAG	7 cut(s)	121, 197, 243, 307, 504, 621, 1356
DpnI	GATC	9 cut(s)	93, 284, 294, 645, 801, 936, 1073, 1083, 1260
DpnII	GATC	9 cut(s)	91, 282, 292, 643, 799, 934, 1071, 1081, 1258
DraI	TTTAAA	2 cut(s)	1062, 1369
DriI	GACNNNNNGTC	1 cut(s)	349
Eam1105I	GACNNNNNGTC	1 cut(s)	349
EciI	GGCGGA	2 cut(s)	680, 1295
Eco130I	CCWWGG	3 cut(s)	316, 918, 1067
Eco57I	CTGAAG	2 cut(s)	204, 795
Eco91I	GGTNACC	1 cut(s)	539
EcoO109I	RGGNCCY	1 cut(s)	691
EcoO65I	GGTNACC	1 cut(s)	539
EcoRII	CCWGG	1 cut(s)	162
EcoT14I	CCWWGG	3 cut(s)	316, 918, 1067
EcoT22I	ATGCAT	2 cut(s)	490, 654
ErhI	CCWWGG	3 cut(s)	316, 918, 1067
Esp3I	CGTCTC	2 cut(s)	861, 1186
FaeI	CATG	6 cut(s)	338, 562, 614, 922, 1071, 1383
FatI	CATG	6 cut(s)	334, 558, 610, 918, 1067, 1379
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	5 cut(s)	409, 978, 1266, 1275, 1278
FokI	GGATG	3 cut(s)	439, 566, 1166
Fsp4HI	GCNGC	5 cut(s)	409, 978, 1266, 1275, 1278
FspBI	CTAG	2 cut(s)	695, 725
GluI	GCNGC	5 cut(s)	409, 978, 1266, 1275, 1278
GsaI	CCCAGC	1 cut(s)	54
GsuI	CTGGAG	1 cut(s)	1002
HaeIII	GGCC	2 cut(s)	693, 842
Hin1II	CATG	6 cut(s)	338, 562, 614, 922, 1071, 1383
HinfI	GANTC	5 cut(s)	134, 263, 517, 597, 884
HphI	GGTGA	7 cut(s)	101, 245, 272, 551, 893, 1259, 1345
Hpy166II	GTNNAC	2 cut(s)	450, 700
Hpy188I	TCNGA	7 cut(s)	96, 184, 343, 358, 579, 1191, 1359
Hpy188III	TCNNGA	7 cut(s)	11, 641, 797, 888, 950, 1079, 1085
Hpy8I	GTNNAC	2 cut(s)	450, 700
HpyAV	CCTTC	4 cut(s)	179, 781, 1313, 1345
HpyCH4III	ACNGT	8 cut(s)	224, 403, 499, 583, 755, 820, 878, 1333
HpyCH4V	TGCA	3 cut(s)	488, 652, 965
HpyF10VI	GCNNNNNNNGC	3 cut(s)	839, 1271, 1274
HpyF3I	CTNAG	7 cut(s)	121, 197, 243, 307, 504, 621, 1356
Hsp92II	CATG	6 cut(s)	338, 562, 614, 922, 1071, 1383
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	9 cut(s)	91, 282, 292, 643, 799, 934, 1071, 1081, 1258
Lsp1109I	GCAGC	3 cut(s)	989, 1252, 1286
LweI	GCATC	3 cut(s)	475, 760, 1018
MaeI	CTAG	2 cut(s)	695, 725
MaeIII	GTNAC	5 cut(s)	190, 238, 539, 1178, 1225
MalI	GATC	9 cut(s)	93, 284, 294, 645, 801, 936, 1073, 1083, 1260
MboI	GATC	9 cut(s)	91, 282, 292, 643, 799, 934, 1071, 1081, 1258
MboII	GAAGA	7 cut(s)	77, 335, 480, 494, 965, 1181, 1228
MfeI	CAATTG	1 cut(s)	371
MflI	RGATCY	1 cut(s)	1081
MhlI	GDGCHC	1 cut(s)	1303
MluCI	AATT	8 cut(s)	270, 371, 522, 631, 677, 718, 969, 1254
MlyI	GAGTC	2 cut(s)	143, 606
MmeI	TCCRAC	1 cut(s)	760
Mph1103I	ATGCAT	2 cut(s)	490, 654
MroXI	GAANNNNTTC	1 cut(s)	432
MseI	TTAA	4 cut(s)	684, 762, 1061, 1368
MslI	CAYNNNNRTG	2 cut(s)	457, 1331
MspA1I	CMGCKG	2 cut(s)	980, 1277
MspCI	CTTAAG	1 cut(s)	761
MspR9I	CCNGG	1 cut(s)	164
MunI	CAATTG	1 cut(s)	371
Mva1269I	GAATGC	1 cut(s)	1127
MvaI	CCWGG	1 cut(s)	164
MwoI	GCNNNNNNNGC	3 cut(s)	839, 1271, 1274
NcoI	CCATGG	2 cut(s)	918, 1067
NdeII	GATC	9 cut(s)	91, 282, 292, 643, 799, 934, 1071, 1081, 1258
NlaIII	CATG	6 cut(s)	338, 562, 614, 922, 1071, 1383
NlaIV	GGNNCC	1 cut(s)	826
NmuCI	GTSAC	2 cut(s)	539, 1178
NsiI	ATGCAT	2 cut(s)	490, 654
PctI	GAATGC	1 cut(s)	1127
PdmI	GAANNNNTTC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	263, 517, 884
PkrI	GCNGC	5 cut(s)	410, 979, 1267, 1276, 1279
PleI	GAGTC	2 cut(s)	142, 605
PpsI	GAGTC	2 cut(s)	142, 605
Psp6I	CCWGG	1 cut(s)	162
PspEI	GGTNACC	1 cut(s)	539
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	826
PspPI	GGNCC	2 cut(s)	691, 841
PsrI	GAACNNNNNNTAC	2 cut(s)	417, 449
PsuI	RGATCY	1 cut(s)	1081
PvuII	CAGCTG	1 cut(s)	980
RsaI	GTAC	2 cut(s)	501, 549
RsaNI	GTAC	2 cut(s)	500, 548
RseI	CAYNNNNRTG	2 cut(s)	457, 1331
SaqAI	TTAA	4 cut(s)	684, 762, 1061, 1368
SatI	GCNGC	5 cut(s)	409, 978, 1266, 1275, 1278
Sau3AI	GATC	9 cut(s)	91, 282, 292, 643, 799, 934, 1071, 1081, 1258
Sau96I	GGNCC	2 cut(s)	691, 841
ScaI	AGTACT	1 cut(s)	549
SchI	GAGTC	2 cut(s)	143, 606
ScrFI	CCNGG	1 cut(s)	164
SduI	GDGCHC	1 cut(s)	1303
SfaNI	GCATC	3 cut(s)	475, 760, 1018
SfcI	CTRYAG	1 cut(s)	204
SmiMI	CAYNNNNRTG	2 cut(s)	457, 1331
SmlI	CTYRAG	3 cut(s)	9, 761, 1269
SmoI	CTYRAG	3 cut(s)	9, 761, 1269
Sse9I	AATT	8 cut(s)	270, 371, 522, 631, 677, 718, 969, 1254
SsiI	CCGC	4 cut(s)	409, 665, 1277, 1280
SspMI	CTAG	2 cut(s)	695, 725
StyD4I	CCNGG	1 cut(s)	162
StyI	CCWWGG	3 cut(s)	316, 918, 1067
TaaI	ACNGT	8 cut(s)	224, 403, 499, 583, 755, 820, 878, 1333
TaqI	TCGA	2 cut(s)	949, 1105
TaqII	GACCGA	1 cut(s)	558
TasI	AATT	8 cut(s)	270, 371, 522, 631, 677, 718, 969, 1254
TatI	WGTACW	1 cut(s)	547
TauI	GCSGC	2 cut(s)	411, 1280
TfiI	GAWTC	3 cut(s)	263, 517, 884
Tru1I	TTAA	4 cut(s)	684, 762, 1061, 1368
Tru9I	TTAA	4 cut(s)	684, 762, 1061, 1368
TscAI	CASTG	8 cut(s)	129, 201, 315, 418, 835, 936, 1144, 1242
TseFI	GTSAC	2 cut(s)	539, 1178
TseI	GCWGC	3 cut(s)	977, 1265, 1274
Tsp45I	GTSAC	2 cut(s)	539, 1178
TspDTI	ATGAA	5 cut(s)	105, 575, 972, 1134, 1182
TspRI	CASTG	8 cut(s)	129, 201, 315, 418, 835, 936, 1144, 1242
Vha464I	CTTAAG	1 cut(s)	761
XapI	RAATTY	1 cut(s)	677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	835
XmnI	GAANNNNTTC	1 cut(s)	432
XspI	CTAG	2 cut(s)	695, 725
ZrmI	AGTACT	1 cut(s)	549
Zsp2I	ATGCAT	2 cut(s)	490, 654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.