Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004428

Physical Location & Seq

Genomic Coordinates Forward (+)

8821651 .. 8823076

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15417.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGGATCGCAACTCTCAAACGCAATCGACGGTAAAGATAACACCAAAACCATCGGATCAGCGGATCCGGACCAGCTTATGGAGATCGAATCCTTGGAGAAGATCTTAAATTACAAGTTCAAAGACAAGAGTTTGTTGCTGAAAGCGTTCACAGACGCTAGTTACGTTGATGACAAGAGTGAATCGTACGAACTCCTAGAACTTTTAGGAGATTCGATCCTAAATATGGGTATAATCTATGATTTTATTAAGCTCTACCCTAAAGAAGCACCTGGTCCGTTGACCAAGCTCCGAGCCGTCAACGTAGATACCGAGAAATTGGCACGGGTCGCTGTAAATCACCAACTCTATAGCTATCTCCGTCATAAGAAACCCTTGCTTGAGGAGCAAATACTAGAATTTGTGGAAGCCATGGAAAAATATCCATTACATTCAAATGGTCTTTTAAAAGTTCCTAAAGTTCTAGCAGACATAGTAGAGTCTACCATTGGAGCTATCTTCATGGACTGCAACTCCACCGAGACCGTCTGGAAGGTGATAAAACCATTGTTGGAGCCAATAATACATTTAGACAAAATGAAGAGCCATCCAATGACAGAACTCAATGAGATGTGTCAGAAGAGGAACTTGAAATTGACGTCCAAAGACACTTGGGAAGAAAATCAAACCTATTGTTTCCATATTGAGGATAAGTTTGTTGGATGTGGTCACCATCCTGTCAAGAAAGAAACTGCTCGTAATTTCGCTGCAAAAAATGCTATTGACAATTTTGCTAAATTTTTCGGAGACCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_3 dsrm

Protein Analysis

264

Amino Acids

30.1

Weight (kDa)

5.8

Isoelectric Point (pI)

24.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	42 - 177	2.1e-14	Ribonuclease-III-like
Ribonuclease_3	PF00636	65 - 170	3.2e-17	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15417 AT4G15417
fragaria_vesca	FvH4_5g08550 FvH4_6g42650
malus_domestica	MD09G1111700.v1.1 MD17G1102000.v1.1
prunus_persica	Prupe.3G213200_v2.0.a1
pyrus_communis	pycom09g03630 pycom17g09640
rosa_chinensis	RchiOBHm_Chr2g0158531 RchiOBHm_Chr7g0189841
rosa_laevigata	RLG00000004582 RLG00000021094
rosa_multiflora	Rmu_co8278635.1_g000001 Rmu_sc0000512.1_g000018 Rmu_sc0005896.1_g000003 Rmu_sc0005896.1_g000004 Rmu_sc0017496.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091270 Rroxscaffold_3G00265090
rosa_rugosa	Rorug02G0469800 Rorug06G0500300
rosa_samantha	Rh2AG535800 Rh2BG549000 Rh2CG519500 Rh2DG558700 Rh7AG105600 Rh7BG108400 Rh7CG110400 Rh7DG108700
rosa_wichuraiana	Rw2G044370 Rw7G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	641
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccI	GTMKAC	1 cut(s)	482
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	5 cut(s)	13, 59, 64, 72, 211
AcsI	RAATTY	2 cut(s)	398, 776
AcyI	GRCGYC	1 cut(s)	638
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	3 cut(s)	79, 226, 685
AgsI	TTSAA	3 cut(s)	121, 435, 631
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	5 cut(s)	76, 253, 289, 354, 494
AluI	AGCT	5 cut(s)	76, 253, 289, 354, 494
Alw26I	GTCTC	2 cut(s)	515, 780
AlwI	GGATC	5 cut(s)	13, 59, 64, 72, 211
Aor13HI	TCCGGA	1 cut(s)	67
ApeKI	GCWGC	1 cut(s)	746
ApoI	RAATTY	2 cut(s)	398, 776
Asp700I	GAANNNNTTC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	70, 275
AsuHPI	GGTGA	3 cut(s)	332, 547, 701
AvaII	GGWCC	2 cut(s)	70, 275
BamHI	GGATCC	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	733
BccI	CCATC	3 cut(s)	59, 594, 720
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	1 cut(s)	273
BcoDI	GTCTC	2 cut(s)	515, 780
BfaI	CTAG	4 cut(s)	159, 197, 395, 464
BfmI	CTRYAG	1 cut(s)	349
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	1 cut(s)	747
BlsI	GCNGC	1 cut(s)	748
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	2 cut(s)	70, 275
BmgT120I	GGNCC	2 cut(s)	70, 275
BmiI	GGNNCC	2 cut(s)	66, 555
BmrFI	CCNGG	1 cut(s)	273
BpuEI	CTTGAG	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	638
BsaI	GGTCTC	2 cut(s)	515, 780
BsaJI	CCNNGG	2 cut(s)	93, 411
BsaWI	WCCGGW	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 226, 685
BseAI	TCCGGA	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	93, 411
BseGI	GGATG	3 cut(s)	586, 707, 712
BseLI	CCNNNNNNNGG	3 cut(s)	79, 226, 685
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	68
BsiWI	CGTACG	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	79, 226, 685
BsmAI	GTCTC	2 cut(s)	515, 780
Bso31I	GGTCTC	2 cut(s)	515, 780
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	6 cut(s)	5, 56, 64, 84, 102, 216
Bsp19I	CCATGG	1 cut(s)	411
BspACI	CCGC	1 cut(s)	62
BspEI	TCCGGA	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	66, 555
BspPI	GGATC	5 cut(s)	13, 59, 64, 72, 211
BspQI	GCTCTTC	1 cut(s)	575
BspTNI	GGTCTC	2 cut(s)	515, 780
BssECI	CCNNGG	2 cut(s)	93, 411
BssMI	GATC	6 cut(s)	5, 56, 64, 84, 102, 216
BssNI	GRCGYC	1 cut(s)	638
BssT1I	CCWWGG	2 cut(s)	93, 411
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	32, 526
Bst6I	CTCTTC	2 cut(s)	575, 614
BstACI	GRCGYC	1 cut(s)	638
BstAPI	GCANNNNNTGC	1 cut(s)	755
BstDSI	CCRYGG	1 cut(s)	411
BstEII	GGTNACC	1 cut(s)	707
BstF5I	GGATG	3 cut(s)	586, 707, 712
BstKTI	GATC	6 cut(s)	8, 59, 67, 87, 105, 219
BstMAI	GTCTC	2 cut(s)	515, 780
BstMBI	GATC	6 cut(s)	5, 56, 64, 84, 102, 216
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 385, 755
BstNI	CCWGG	1 cut(s)	273
BstPI	GGTNACC	1 cut(s)	707
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	733
BstX2I	RGATCY	2 cut(s)	64, 102
BstYI	RGATCY	2 cut(s)	64, 102
BtgI	CCRYGG	1 cut(s)	411
BtsCI	GGATG	3 cut(s)	586, 707, 712
Cfr13I	GGNCC	2 cut(s)	70, 275
CseI	GACGC	1 cut(s)	164
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	2 cut(s)	412, 502
CviJI	RGCY	9 cut(s)	76, 253, 289, 296, 354, 410, 494, 556, 585
CviKI_1	RGCY	9 cut(s)	76, 253, 289, 296, 354, 410, 494, 556, 585
CviQI	GTAC	1 cut(s)	187
DpnI	GATC	6 cut(s)	7, 58, 66, 86, 104, 218
DpnII	GATC	6 cut(s)	5, 56, 64, 84, 102, 216
DraI	TTTAAA	1 cut(s)	447
Eam1104I	CTCTTC	2 cut(s)	575, 614
EarI	CTCTTC	2 cut(s)	575, 614
Eco130I	CCWWGG	2 cut(s)	93, 411
Eco31I	GGTCTC	2 cut(s)	515, 780
Eco47I	GGWCC	2 cut(s)	70, 275
Eco91I	GGTNACC	1 cut(s)	707
EcoO65I	GGTNACC	1 cut(s)	707
EcoRII	CCWGG	1 cut(s)	271
EcoT14I	CCWWGG	2 cut(s)	93, 411
ErhI	CCWWGG	2 cut(s)	93, 411
FaeI	CATG	2 cut(s)	415, 505
FalI	AAGNNNNNCTT	4 cut(s)	359, 391, 611, 643
FatI	CATG	2 cut(s)	411, 501
FblI	GTMKAC	1 cut(s)	482
Fnu4HI	GCNGC	1 cut(s)	747
FokI	GGATG	3 cut(s)	573, 699, 714
Fsp4HI	GCNGC	1 cut(s)	747
FspBI	CTAG	4 cut(s)	159, 197, 395, 464
GluI	GCNGC	1 cut(s)	747
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	638
Hin1II	CATG	2 cut(s)	415, 505
HincII	GTYRAC	2 cut(s)	282, 301
HindII	GTYRAC	2 cut(s)	282, 301
HinfI	GANTC	4 cut(s)	89, 182, 212, 479
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	3 cut(s)	332, 547, 701
Hpy166II	GTNNAC	4 cut(s)	150, 282, 301, 483
Hpy188I	TCNGA	4 cut(s)	56, 293, 618, 785
Hpy188III	TCNNGA	3 cut(s)	68, 529, 721
Hpy8I	GTNNAC	4 cut(s)	150, 282, 301, 483
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	2 cut(s)	32, 526
HpyCH4IV	ACGT	3 cut(s)	165, 303, 638
HpyCH4V	TGCA	2 cut(s)	510, 749
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 385, 755
HpySE526I	ACGT	3 cut(s)	165, 303, 638
Hsp92I	GRCGYC	1 cut(s)	638
Hsp92II	CATG	2 cut(s)	415, 505
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	6 cut(s)	5, 56, 64, 84, 102, 216
LguI	GCTCTTC	1 cut(s)	575
LmnI	GCTCC	4 cut(s)	294, 385, 491, 553
LpnPI	CCDG	6 cut(s)	81, 86, 258, 285, 514, 729
Lsp1109I	GCAGC	1 cut(s)	733
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	4 cut(s)	159, 197, 395, 464
MaeII	ACGT	3 cut(s)	165, 303, 638
MaeIII	GTNAC	2 cut(s)	161, 707
MalI	GATC	6 cut(s)	7, 58, 66, 86, 104, 218
MboI	GATC	6 cut(s)	5, 56, 64, 84, 102, 216
MboII	GAAGA	5 cut(s)	112, 490, 592, 631, 668
MflI	RGATCY	2 cut(s)	64, 102
MluCI	AATT	7 cut(s)	109, 317, 398, 632, 739, 766, 776
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	531, 679
MnlI	CCTC	3 cut(s)	376, 615, 679
MroI	TCCGGA	1 cut(s)	67
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	3 cut(s)	107, 249, 446
MslI	CAYNNNNRTG	1 cut(s)	435
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	329, 385, 755
NcoI	CCATGG	1 cut(s)	411
NdeII	GATC	6 cut(s)	5, 56, 64, 84, 102, 216
NlaIII	CATG	2 cut(s)	415, 505
NlaIV	GGNNCC	2 cut(s)	66, 555
NmuCI	GTSAC	1 cut(s)	707
PciSI	GCTCTTC	1 cut(s)	575
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 309
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	3 cut(s)	89, 182, 212
Pfl23II	CGTACG	1 cut(s)	186
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	1 cut(s)	748
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
Psp6I	CCWGG	1 cut(s)	271
PspEI	GGTNACC	1 cut(s)	707
PspGI	CCWGG	1 cut(s)	271
PspLI	CGTACG	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	66, 555
PspPI	GGNCC	2 cut(s)	70, 275
PsuI	RGATCY	2 cut(s)	64, 102
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
RseI	CAYNNNNRTG	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	575
SaqAI	TTAA	3 cut(s)	107, 249, 446
SatI	GCNGC	1 cut(s)	747
Sau3AI	GATC	6 cut(s)	5, 56, 64, 84, 102, 216
Sau96I	GGNCC	2 cut(s)	70, 275
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	1 cut(s)	273
SexAI	ACCWGGT	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	349
SinI	GGWCC	2 cut(s)	70, 275
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	7 cut(s)	109, 317, 398, 632, 739, 766, 776
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	4 cut(s)	159, 197, 395, 464
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	2 cut(s)	93, 411
TaaI	ACNGT	2 cut(s)	32, 526
TaiI	ACGT	3 cut(s)	168, 306, 641
TaqI	TCGA	3 cut(s)	27, 87, 215
TasI	AATT	7 cut(s)	109, 317, 398, 632, 739, 766, 776
TfiI	GAWTC	3 cut(s)	89, 182, 212
Tru1I	TTAA	3 cut(s)	107, 249, 446
Tru9I	TTAA	3 cut(s)	107, 249, 446
TseFI	GTSAC	1 cut(s)	707
TseI	GCWGC	1 cut(s)	746
Tsp45I	GTSAC	1 cut(s)	707
TspDTI	ATGAA	2 cut(s)	490, 593
TspGWI	ACGGA	2 cut(s)	267, 350
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	70, 275
XapI	RAATTY	2 cut(s)	398, 776
XmiI	GTMKAC	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	4 cut(s)	159, 197, 395, 464
ZraI	GACGTC	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.