Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004428

Physical Location & Seq

Genomic Coordinates Forward (+)

21718024 .. 21720295

Gene Structure 2272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G213200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCCAACCATGGGAGCACAAGCAGAAGAATATCAAACACTTCATATGGACGAAGTCTTGTCTTCAGAGGCTGAAAAGTCAACGACGTTGACTGATGAGGAGGCTCAGCCAAATCTTGAAGAAGTGGAGAAGATCATAGGCTATAGCTTCACCAACAAGGTTTTGTTAAAAGAAGCTTTTACACATTCTTCTTTTCTGTCCACAGAGCGCTCTGCCTCTTCTTATGAGCGTTTGGAATATGTTGGGGACGCTGTGCTCAATTTGTTGTTCAGCAGAGAACAATACAATTTGTACCCGGACTTGCCACCAGGCAGGTTGACCCGGCTCCGGGCGGCCAATGTGGATACCGAGAAGCTTGCACGTGTGGCTATCAAACACGGGTTGCACCGCTACCTGCGGCACAAGAAACCCTTTCTTGAAGAACAAATTCGAGAATTCACCCGAGCGATTTCGCATTATCCACTGCATTCCAATGGTCTCATAGATGCTCCAAAGAACCTTGCAGACATTGTTGAATCAACGATAGGAGCAGTTTTCATGGACTGCAACTCAATTGACACTGTGTGGGAGGCGTTTAAGGATTTGTTGGAGCCGATAATAAATCCGGGGACGATAAAGACGCATCCTGTTACACAGCTTTATGAAATATGCCAAAAGAACAATCTAAAACTTCGGTTTGTAAATTTGTGGGAGGAAAGCCACACGGTTGAGGTTTTCATAAACAATGAGATTGTTGGAAGAGGTACTTATAGTCTTAAAAAGGAAGTCGCACAAAACAGAGCAGCAAAAGATGCATTGGACAACATTTGGAAAGTATTAGGTGAGGAAAAAGAAAATGCCCAAGACCAAGACCAAGAGGCAAATTGTCAATCTGGGGAACTACCTGAAATGAAAAATCTTAATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3 Ribonuclease_3 dsrm

Protein Analysis

303

Amino Acids

34.45

Weight (kDa)

5.12

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15417 AT4G15417
fragaria_vesca	FvH4_5g08550 FvH4_6g42650
malus_domestica	MD09G1111700.v1.1 MD17G1102000.v1.1
prunus_persica	Prupe.3G213200_v2.0.a1
pyrus_communis	pycom09g03630 pycom17g09640
rosa_chinensis	RchiOBHm_Chr2g0158531 RchiOBHm_Chr7g0189841
rosa_laevigata	RLG00000004582 RLG00000021094
rosa_multiflora	Rmu_co8278635.1_g000001 Rmu_sc0000512.1_g000018 Rmu_sc0005896.1_g000003 Rmu_sc0005896.1_g000004 Rmu_sc0017496.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091270 Rroxscaffold_3G00265090
rosa_rugosa	Rorug02G0469800 Rorug06G0500300
rosa_samantha	Rh2AG535800 Rh2BG549000 Rh2CG519500 Rh2DG558700 Rh7AG105600 Rh7BG108400 Rh7CG110400 Rh7DG108700
rosa_wichuraiana	Rw2G044370 Rw7G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	303, 402
AciI	CCGC	3 cut(s)	332, 388, 397
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	3 cut(s)	426, 434, 682
AcuI	CTGAAG	1 cut(s)	48
AcvI	CACGTG	1 cut(s)	362
AdeI	CACNNNGTG	1 cut(s)	564
AfaI	GTAC	2 cut(s)	293, 745
AfeI	AGCGCT	1 cut(s)	209
AfiI	CCNNNNNNNGG	3 cut(s)	11, 327, 328
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	3 cut(s)	119, 419, 515
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	4 cut(s)	147, 176, 355, 637
AluI	AGCT	4 cut(s)	147, 176, 355, 637
Alw21I	GWGCWC	2 cut(s)	19, 258
Alw26I	GTCTC	1 cut(s)	482
AlwNI	CAGNNNCTG	1 cut(s)	71
Ama87I	CYCGRG	1 cut(s)	441
Aor51HI	AGCGCT	1 cut(s)	209
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	782
ApoI	RAATTY	3 cut(s)	426, 434, 682
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	210
AsuC2I	CCSGG	4 cut(s)	296, 322, 329, 606
AsuHPI	GGTGA	3 cut(s)	142, 430, 833
AvaI	CYCGRG	1 cut(s)	441
BbrPI	CACGTG	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	2 cut(s)	19, 258
BbvI	GCAGC	1 cut(s)	794
BcgI	CGANNNNNNTGC	2 cut(s)	338, 372
BciT130I	CCWGG	1 cut(s)	309
BciVI	GTATCC	1 cut(s)	337
BcnI	CCSGG	4 cut(s)	296, 322, 329, 606
BcoDI	GTCTC	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	211
BfuAI	ACCTGC	2 cut(s)	303, 402
BfuI	GTATCC	1 cut(s)	337
BisI	GCNGC	3 cut(s)	333, 398, 783
BlpI	GCTNAGC	1 cut(s)	105
BlsI	GCNGC	3 cut(s)	334, 399, 784
Bme1390I	CCNGG	5 cut(s)	296, 309, 322, 329, 606
BmeT110I	CYCGRG	1 cut(s)	441
BmiI	GGNNCC	2 cut(s)	326, 591
BmrFI	CCNGG	5 cut(s)	296, 309, 322, 329, 606
BmsI	GCATC	3 cut(s)	475, 631, 781
BpiI	GAAGAC	1 cut(s)	54
Bpu1102I	GCTNAGC	1 cut(s)	105
BpuMI	CCSGG	4 cut(s)	296, 322, 329, 606
BsaAI	YACGTR	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	9, 605
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 327, 328
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	2 cut(s)	9, 605
BseGI	GGATG	1 cut(s)	622
BseLI	CCNNNNNNNGG	3 cut(s)	11, 327, 328
BseMII	CTCAG	1 cut(s)	119
BseRI	GAGGAG	1 cut(s)	113
BseXI	GCAGC	1 cut(s)	794
BshFI	GGCC	1 cut(s)	335
BsiHKAI	GWGCWC	2 cut(s)	19, 258
BsiHKCI	CYCGRG	1 cut(s)	441
BsiSI	CCGG	4 cut(s)	296, 322, 328, 605
BslFI	GGGAC	2 cut(s)	260, 622
BslI	CCNNNNNNNGG	3 cut(s)	11, 327, 328
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	2 cut(s)	260, 622
BsmI	GAATGC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	441
Bsp1286I	GDGCHC	2 cut(s)	19, 258
Bsp143I	GATC	1 cut(s)	132
Bsp1720I	GCTNAGC	1 cut(s)	105
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	3 cut(s)	332, 388, 397
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	326, 591
BspMI	ACCTGC	2 cut(s)	303, 402
BspTNI	GGTCTC	1 cut(s)	482
BssECI	CCNNGG	2 cut(s)	9, 605
BssMI	GATC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	562, 706
Bst6I	CTCTTC	2 cut(s)	223, 733
BstAPI	GCANNNNNTGC	1 cut(s)	791
BstBAI	YACGTR	1 cut(s)	362
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	622
BstH2I	RGCGCY	1 cut(s)	211
BstHHI	GCGC	1 cut(s)	210
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 791
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	5 cut(s)	294, 307, 320, 327, 604
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	794
BstV2I	GAAGAC	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	622
BtsI	GCAGTG	1 cut(s)	461
BtsIMutI	CAGTG	2 cut(s)	461, 558
BveI	ACCTGC	2 cut(s)	303, 402
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	71
CfoI	GCGC	1 cut(s)	210
CseI	GACGC	2 cut(s)	257, 628
Csp6I	GTAC	2 cut(s)	292, 744
CviAII	CATG	2 cut(s)	10, 538
CviQI	GTAC	2 cut(s)	292, 744
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
DraIII	CACNNNGTG	1 cut(s)	564
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	2 cut(s)	223, 733
EarI	CTCTTC	2 cut(s)	223, 733
Eco130I	CCWWGG	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	482
Eco47III	AGCGCT	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	48
Eco72I	CACGTG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	441
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	307
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	796
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	2 cut(s)	13, 541
FalI	AAGNNNNNCTT	4 cut(s)	395, 427, 730, 762
FaqI	GGGAC	2 cut(s)	260, 622
FatI	CATG	2 cut(s)	9, 537
FauNDI	CATATG	1 cut(s)	45
Fnu4HI	GCNGC	3 cut(s)	333, 398, 783
FokI	GGATG	1 cut(s)	609
Fsp4HI	GCNGC	3 cut(s)	333, 398, 783
GlaI	GCGC	1 cut(s)	209
GluI	GCNGC	3 cut(s)	333, 398, 783
HaeII	RGCGCY	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	4 cut(s)	296, 322, 328, 605
HgaI	GACGC	2 cut(s)	257, 628
HhaI	GCGC	1 cut(s)	210
Hin1II	CATG	2 cut(s)	13, 541
Hin6I	GCGC	1 cut(s)	208
HinP1I	GCGC	1 cut(s)	208
HincII	GTYRAC	3 cut(s)	81, 90, 318
HindII	GTYRAC	3 cut(s)	81, 90, 318
HindIII	AAGCTT	2 cut(s)	174, 353
HinfI	GANTC	1 cut(s)	515
HpaII	CCGG	4 cut(s)	296, 322, 328, 605
HphI	GGTGA	3 cut(s)	142, 430, 833
Hpy166II	GTNNAC	4 cut(s)	81, 90, 201, 318
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	3 cut(s)	116, 416, 431
Hpy8I	GTNNAC	4 cut(s)	81, 90, 201, 318
Hpy99I	CGWCG	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	562, 706
HpyCH4IV	ACGT	2 cut(s)	86, 361
HpyCH4V	TGCA	6 cut(s)	359, 385, 466, 503, 546, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 791
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	2 cut(s)	86, 361
Hsp92II	CATG	2 cut(s)	13, 541
HspAI	GCGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	5 cut(s)	14, 330, 493, 527, 589
Lsp1109I	GCAGC	1 cut(s)	794
LweI	GCATC	3 cut(s)	475, 631, 781
MaeII	ACGT	2 cut(s)	86, 361
MaeIII	GTNAC	1 cut(s)	628
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	8 cut(s)	38, 54, 131, 142, 180, 210, 431, 750
MfeI	CAATTG	1 cut(s)	552
MhlI	GDGCHC	2 cut(s)	19, 258
MluCI	AATT	7 cut(s)	259, 286, 426, 434, 552, 682, 862
MmeI	TCCRAC	2 cut(s)	567, 715
Mph1103I	ATGCAT	1 cut(s)	796
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	4 cut(s)	167, 576, 756, 900
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	4 cut(s)	296, 322, 328, 605
MspR9I	CCNGG	5 cut(s)	296, 309, 322, 329, 606
MunI	CAATTG	1 cut(s)	552
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	365, 791
NciI	CCSGG	4 cut(s)	296, 322, 329, 606
NcoI	CCATGG	1 cut(s)	9
NdeI	CATATG	1 cut(s)	45
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	13, 541
NlaIV	GGNNCC	2 cut(s)	326, 591
NsiI	ATGCAT	1 cut(s)	796
PctI	GAATGC	1 cut(s)	466
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	515
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	334, 399, 784
PmaCI	CACGTG	1 cut(s)	362
PmlI	CACGTG	1 cut(s)	362
Ppu21I	YACGTR	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	307
PspCI	CACGTG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	2 cut(s)	326, 591
PstNI	CAGNNNCTG	1 cut(s)	71
PsyI	GACNNNGTC	1 cut(s)	53
RsaI	GTAC	2 cut(s)	293, 745
RsaNI	GTAC	2 cut(s)	292, 744
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	4 cut(s)	167, 576, 756, 900
SatI	GCNGC	3 cut(s)	333, 398, 783
Sau3AI	GATC	1 cut(s)	132
ScrFI	CCNGG	5 cut(s)	296, 309, 322, 329, 606
SduI	GDGCHC	2 cut(s)	19, 258
SfaNI	GCATC	3 cut(s)	475, 631, 781
SfcI	CTRYAG	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	471
Sse9I	AATT	7 cut(s)	259, 286, 426, 434, 552, 682, 862
SsiI	CCGC	3 cut(s)	332, 388, 397
StyD4I	CCNGG	5 cut(s)	294, 307, 320, 327, 604
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	2 cut(s)	562, 706
TaiI	ACGT	2 cut(s)	89, 364
TaqI	TCGA	1 cut(s)	430
TasI	AATT	7 cut(s)	259, 286, 426, 434, 552, 682, 862
TauI	GCSGC	2 cut(s)	335, 400
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	4 cut(s)	167, 576, 756, 900
Tru9I	TTAA	4 cut(s)	167, 576, 756, 900
TscAI	CASTG	2 cut(s)	468, 565
TseI	GCWGC	1 cut(s)	782
TspDTI	ATGAA	5 cut(s)	32, 526, 657, 706, 905
TspRI	CASTG	2 cut(s)	468, 565
Tth111I	GACNNNGTC	1 cut(s)	53
XapI	RAATTY	3 cut(s)	426, 434, 682
XmnI	GAANNNNTTC	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.