Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004428

Physical Location & Seq

Genomic Coordinates Forward (+)

33190186 .. 33192558

Gene Structure 2373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g42650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGGAGCAGAACCCCAAGAAACTCCTATTGATATGAACGAAGTGAAACAAAGCTTGTTAGAGACAGAACCATCAACCCTGGTGACCGAGTCAATATCTCTGCCGAGTCTGGATGAAGTGGAGGAGATCATAGACTACAAATTCAAGAACAAGGATCTGCTGGAAGAGGCCTTCACGCATTCATCTTTTATGTGCAGCTTTTCCTATGAGCGTTTGGAGTACGTCGGCGACGCCGTGCTGAATCTGTTGTTTAGCCGGGAGCATTACTTTTTGTACCCGGATATGGCTCCTGGAAAGCTGACCCGTCTTAGGGCCGCCAATGTTGACACCGAGAAGCTGGCACGCGTGGCGCTCCGACACGGCTTCCACCGCTACCTCCGCCACAAGAAACGTTTGCTTGAAGATCAAATCCAAGAGTTTGCGCGAGCAATTGTTGATTATGATTTGCACTCCAATGGTCTCATTGATGCTCCTAAAGATCTTGCTGATCTCGTCGAATCCATAATCGGAGCAGTTTTCATGGACTGCAACTCAATAGACATTGTGTGGAAGGTGTTCAAGGGGTTGCTGGAGCCGATAATAACTCCGGAGACTATACAGATACATTTTAACACCCAGCTCCATGAGATGTGTCAAAAGAACAATCGAACTCTCAAATATGTAGACTCATGGGAGGAAAACAAAATTGTTGATTGTTTCATCGACGGCGAGTTTGTTGGAAGAGGTACCTACAATCTTCGAAAGGAAGTTGCGCAGAACCGAGCAGCAAAGGATGCATTGGACAACAAGCAGAAGTGGATGGTTTTACGCGAGAAAGAGACCGCTGATGAGCAAGAAGAAGAAAGTCCTACCAGTCAGTTATCCGAGGAGGAATCCGAAGTGAATAAACAACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3 Ribonuclease_3 dsrm

Protein Analysis

299

Amino Acids

34.48

Weight (kDa)

4.82

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	50 - 175	1.7e-15	Ribonuclease-III-like
Ribonuclease_3	PF00636	70 - 176	2.2e-21	Ribonuclease III domain
dsrm	PF00035	205 - 262	2.9e-06	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15417 AT4G15417
fragaria_vesca	FvH4_5g08550 FvH4_6g42650
malus_domestica	MD09G1111700.v1.1 MD17G1102000.v1.1
prunus_persica	Prupe.3G213200_v2.0.a1
pyrus_communis	pycom09g03630 pycom17g09640
rosa_chinensis	RchiOBHm_Chr2g0158531 RchiOBHm_Chr7g0189841
rosa_laevigata	RLG00000004582 RLG00000021094
rosa_multiflora	Rmu_co8278635.1_g000001 Rmu_sc0000512.1_g000018 Rmu_sc0005896.1_g000003 Rmu_sc0005896.1_g000004 Rmu_sc0017496.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091270 Rroxscaffold_3G00265090
rosa_rugosa	Rorug02G0469800 Rorug06G0500300
rosa_samantha	Rh2AG535800 Rh2BG549000 Rh2CG519500 Rh2DG558700 Rh7AG105600 Rh7BG108400 Rh7CG110400 Rh7DG108700
rosa_wichuraiana	Rw2G044370 Rw7G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	753
Acc65I	GGTACC	1 cut(s)	725
AccB1I	GGYRCC	1 cut(s)	725
AccI	GTMKAC	1 cut(s)	663
AccII	CGCG	3 cut(s)	345, 424, 810
AccIII	TCCGGA	1 cut(s)	586
AciI	CCGC	4 cut(s)	315, 370, 379, 822
AclI	AACGTT	1 cut(s)	391
AclWI	GGATC	1 cut(s)	162
AcsI	RAATTY	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	3 cut(s)	221, 275, 727
AfiI	CCNNNNNNNGG	3 cut(s)	283, 309, 310
AflIII	ACRYGT	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	145, 401, 559
AjnI	CCWGG	2 cut(s)	78, 289
AluBI	AGCT	5 cut(s)	54, 198, 298, 337, 619
AluI	AGCT	5 cut(s)	54, 198, 298, 337, 619
Alw26I	GTCTC	4 cut(s)	56, 464, 584, 812
AlwI	GGATC	1 cut(s)	162
Aor13HI	TCCGGA	1 cut(s)	586
AoxI	GGCC	2 cut(s)	168, 312
ApeKI	GCWGC	2 cut(s)	195, 764
ApoI	RAATTY	1 cut(s)	140
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
Asp700I	GAANNNNTTC	1 cut(s)	554
Asp718I	GGTACC	1 cut(s)	725
AspLEI	GCGC	3 cut(s)	352, 424, 754
AspS9I	GGNCC	1 cut(s)	312
AsuC2I	CCSGG	2 cut(s)	257, 278
AsuHPI	GGTGA	1 cut(s)	94
AsuII	TTCGAA	1 cut(s)	739
BanI	GGYRCC	1 cut(s)	725
BbvI	GCAGC	2 cut(s)	207, 776
BccI	CCATC	2 cut(s)	79, 793
BceAI	ACGGC	3 cut(s)	218, 376, 721
BciT130I	CCWGG	2 cut(s)	80, 291
BcnI	CCSGG	2 cut(s)	257, 278
BcoDI	GTCTC	4 cut(s)	56, 464, 584, 812
BfoI	RGCGCY	1 cut(s)	353
BglII	AGATCT	1 cut(s)	478
BisI	GCNGC	3 cut(s)	196, 315, 765
BlsI	GCNGC	3 cut(s)	197, 316, 766
Bme1390I	CCNGG	4 cut(s)	80, 257, 278, 291
BmgT120I	GGNCC	1 cut(s)	312
BmiI	GGNNCC	3 cut(s)	288, 573, 727
BmrFI	CCNGG	4 cut(s)	80, 257, 278, 291
BmsI	GCATC	2 cut(s)	457, 763
BpmI	CTGGAG	1 cut(s)	590
Bpu14I	TTCGAA	1 cut(s)	739
BpuMI	CCSGG	2 cut(s)	257, 278
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	2 cut(s)	464, 812
BsaJI	CCNNGG	2 cut(s)	78, 864
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	3 cut(s)	283, 309, 310
Bse1I	ACTGG	1 cut(s)	852
BseAI	TCCGGA	1 cut(s)	586
BseBI	CCWGG	2 cut(s)	80, 291
BseDI	CCNNGG	2 cut(s)	78, 864
BseGI	GGATG	3 cut(s)	118, 778, 804
BseLI	CCNNNNNNNGG	3 cut(s)	283, 309, 310
BseNI	ACTGG	1 cut(s)	852
BseRI	GAGGAG	2 cut(s)	137, 881
BseXI	GCAGC	2 cut(s)	207, 776
BseYI	CCCAGC	1 cut(s)	615
BsgI	GTGCAG	1 cut(s)	214
Bsh1236I	CGCG	3 cut(s)	345, 424, 810
BshFI	GGCC	2 cut(s)	170, 314
BshNI	GGYRCC	1 cut(s)	725
BsiSI	CCGG	3 cut(s)	256, 278, 587
BslI	CCNNNNNNNGG	3 cut(s)	283, 309, 310
BsmAI	GTCTC	4 cut(s)	56, 464, 584, 812
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	170, 314
Bso31I	GGTCTC	2 cut(s)	464, 812
Bsp119I	TTCGAA	1 cut(s)	739
Bsp13I	TCCGGA	1 cut(s)	586
Bsp143I	GATC	5 cut(s)	126, 154, 403, 478, 487
BspACI	CCGC	4 cut(s)	315, 370, 379, 822
BspANI	GGCC	2 cut(s)	170, 314
BspEI	TCCGGA	1 cut(s)	586
BspFNI	CGCG	3 cut(s)	345, 424, 810
BspLI	GGNNCC	3 cut(s)	288, 573, 727
BspPI	GGATC	1 cut(s)	162
BspT104I	TTCGAA	1 cut(s)	739
BspT107I	GGYRCC	1 cut(s)	725
BspTNI	GGTCTC	2 cut(s)	464, 812
BsrI	ACTGG	1 cut(s)	852
BssECI	CCNNGG	2 cut(s)	78, 864
BssMI	GATC	5 cut(s)	126, 154, 403, 478, 487
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	80, 291
Bst6I	CTCTTC	2 cut(s)	159, 715
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	773
BstBI	TTCGAA	1 cut(s)	739
BstC8I	GCNNGC	3 cut(s)	339, 343, 426
BstDEI	CTNAG	1 cut(s)	308
BstEII	GGTNACC	1 cut(s)	82
BstF5I	GGATG	3 cut(s)	118, 778, 804
BstFNI	CGCG	3 cut(s)	345, 424, 810
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	3 cut(s)	352, 424, 754
BstKTI	GATC	5 cut(s)	129, 157, 406, 481, 490
BstMAI	GTCTC	4 cut(s)	56, 464, 584, 812
BstMBI	GATC	5 cut(s)	126, 154, 403, 478, 487
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 369, 378, 773
BstNI	CCWGG	2 cut(s)	80, 291
BstPI	GGTNACC	1 cut(s)	82
BstSCI	CCNGG	4 cut(s)	78, 255, 276, 289
BstUI	CGCG	3 cut(s)	345, 424, 810
BstV1I	GCAGC	2 cut(s)	207, 776
BstX2I	RGATCY	2 cut(s)	154, 478
BstYI	RGATCY	2 cut(s)	154, 478
BsuRI	GGCC	2 cut(s)	170, 314
BtsCI	GGATG	3 cut(s)	118, 778, 804
Cac8I	GCNNGC	3 cut(s)	339, 343, 426
CfoI	GCGC	3 cut(s)	352, 424, 754
Cfr13I	GGNCC	1 cut(s)	312
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	220, 274, 726
CviAII	CATG	4 cut(s)	520, 623, 669, 894
CviQI	GTAC	3 cut(s)	220, 274, 726
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	5 cut(s)	128, 156, 405, 480, 489
DpnII	GATC	5 cut(s)	126, 154, 403, 478, 487
Eam1104I	CTCTTC	2 cut(s)	159, 715
EarI	CTCTTC	2 cut(s)	159, 715
EciI	GGCGGA	1 cut(s)	368
Eco147I	AGGCCT	1 cut(s)	170
Eco31I	GGTCTC	2 cut(s)	464, 812
Eco91I	GGTNACC	1 cut(s)	82
EcoO65I	GGTNACC	1 cut(s)	82
EcoRII	CCWGG	2 cut(s)	78, 289
EcoT22I	ATGCAT	1 cut(s)	778
FaeI	CATG	4 cut(s)	523, 626, 672, 897
FatI	CATG	4 cut(s)	519, 622, 668, 893
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	3 cut(s)	196, 315, 765
FokI	GGATG	3 cut(s)	125, 785, 811
Fsp4HI	GCNGC	3 cut(s)	196, 315, 765
FspI	TGCGCA	1 cut(s)	753
GlaI	GCGC	3 cut(s)	351, 423, 753
GluI	GCNGC	3 cut(s)	196, 315, 765
GsaI	CCCAGC	1 cut(s)	619
GsuI	CTGGAG	1 cut(s)	590
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	2 cut(s)	170, 314
HapII	CCGG	3 cut(s)	256, 278, 587
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	3 cut(s)	352, 424, 754
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	4 cut(s)	523, 626, 672, 897
Hin6I	GCGC	3 cut(s)	350, 422, 752
HinP1I	GCGC	3 cut(s)	350, 422, 752
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	1 cut(s)	52
HinfI	GANTC	6 cut(s)	89, 106, 241, 497, 665, 872
HpaII	CCGG	3 cut(s)	256, 278, 587
HphI	GGTGA	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	325, 664
Hpy188I	TCNGA	4 cut(s)	356, 509, 865, 877
Hpy188III	TCNNGA	3 cut(s)	110, 145, 587
Hpy8I	GTNNAC	2 cut(s)	325, 664
Hpy99I	CGWCG	4 cut(s)	227, 233, 497, 707
HpyAV	CCTTC	2 cut(s)	181, 544
HpyCH4IV	ACGT	2 cut(s)	222, 391
HpyCH4V	TGCA	4 cut(s)	195, 448, 528, 776
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 369, 378, 773
HpyF3I	CTNAG	1 cut(s)	308
HpySE526I	ACGT	2 cut(s)	222, 391
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	4 cut(s)	523, 626, 672, 897
HspAI	GCGC	3 cut(s)	350, 422, 752
Kpn2I	TCCGGA	1 cut(s)	586
KpnI	GGTACC	1 cut(s)	729
Kzo9I	GATC	5 cut(s)	126, 154, 403, 478, 487
LmnI	GCTCC	8 cut(s)	5, 259, 292, 357, 475, 509, 571, 624
Lsp1109I	GCAGC	2 cut(s)	207, 776
LweI	GCATC	2 cut(s)	457, 763
MaeII	ACGT	2 cut(s)	222, 391
MaeIII	GTNAC	1 cut(s)	82
MalI	GATC	5 cut(s)	128, 156, 405, 480, 489
MboI	GATC	5 cut(s)	126, 154, 403, 478, 487
MboII	GAAGA	6 cut(s)	176, 413, 728, 732, 848, 851
MfeI	CAATTG	1 cut(s)	429
MflI	RGATCY	2 cut(s)	154, 478
MluCI	AATT	3 cut(s)	140, 429, 684
MluI	ACGCGT	1 cut(s)	343
MlyI	GAGTC	3 cut(s)	98, 115, 659
MmeI	TCCRAC	2 cut(s)	379, 697
MnlI	CCTC	7 cut(s)	115, 160, 386, 667, 716, 859, 862
Mph1103I	ATGCAT	1 cut(s)	778
MroI	TCCGGA	1 cut(s)	586
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	1 cut(s)	609
MslI	CAYNNNNRTG	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	824
MspI	CCGG	3 cut(s)	256, 278, 587
MspR9I	CCNGG	4 cut(s)	80, 257, 278, 291
MunI	CAATTG	1 cut(s)	429
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	2 cut(s)	80, 291
MvnI	CGCG	3 cut(s)	345, 424, 810
MwoI	GCNNNNNNNGC	4 cut(s)	347, 369, 378, 773
NciI	CCSGG	2 cut(s)	257, 278
NdeII	GATC	5 cut(s)	126, 154, 403, 478, 487
NlaIII	CATG	4 cut(s)	523, 626, 672, 897
NlaIV	GGNNCC	3 cut(s)	288, 573, 727
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	82
NsbI	TGCGCA	1 cut(s)	753
NsiI	ATGCAT	1 cut(s)	778
NspV	TTCGAA	1 cut(s)	739
PceI	AGGCCT	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PctI	GAATGC	1 cut(s)	178
PdmI	GAANNNNTTC	1 cut(s)	554
PfeI	GAWTC	3 cut(s)	241, 497, 872
PflFI	GACNNNGTC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	289
PkrI	GCNGC	3 cut(s)	197, 316, 766
PleI	GAGTC	3 cut(s)	97, 114, 659
PpsI	GAGTC	3 cut(s)	97, 114, 659
Psp1406I	AACGTT	1 cut(s)	391
Psp6I	CCWGG	2 cut(s)	78, 289
PspEI	GGTNACC	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	615
PspGI	CCWGG	2 cut(s)	78, 289
PspN4I	GGNNCC	3 cut(s)	288, 573, 727
PspPI	GGNCC	1 cut(s)	312
PsuI	RGATCY	2 cut(s)	154, 478
PsyI	GACNNNGTC	1 cut(s)	88
RsaI	GTAC	3 cut(s)	221, 275, 727
RsaNI	GTAC	3 cut(s)	220, 274, 726
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	3 cut(s)	196, 315, 765
Sau3AI	GATC	5 cut(s)	126, 154, 403, 478, 487
Sau96I	GGNCC	1 cut(s)	312
SchI	GAGTC	3 cut(s)	98, 115, 659
ScrFI	CCNGG	4 cut(s)	80, 257, 278, 291
SfaNI	GCATC	2 cut(s)	457, 763
SfuI	TTCGAA	1 cut(s)	739
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	3 cut(s)	140, 429, 684
SseBI	AGGCCT	1 cut(s)	170
SsiI	CCGC	4 cut(s)	315, 370, 379, 822
StuI	AGGCCT	1 cut(s)	170
StyD4I	CCNGG	4 cut(s)	78, 255, 276, 289
TaiI	ACGT	2 cut(s)	225, 394
TaqI	TCGA	4 cut(s)	495, 646, 702, 739
TaqII	GACCGA	1 cut(s)	101
TasI	AATT	3 cut(s)	140, 429, 684
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	3 cut(s)	241, 497, 872
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	195, 764
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	5 cut(s)	50, 129, 171, 508, 688
Tth111I	GACNNNGTC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	140
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	554
Zsp2I	ATGCAT	1 cut(s)	778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.