Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004428

Physical Location & Seq

Genomic Coordinates Forward (+)

9162746 .. 9164005

Gene Structure 1260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16955

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGAAGTGGCCAAGCATTACAGTGATCAAACTTTGGAAGAAGGAGAAATCAGTCCAACCATGGAAGCACAACCCCAAGAAACCCCTACTGTTCACATGAACGCAGTGAAGCAAAGCTTATTACAGACCGAGTCAACCTCGAAGGAGCCGAGTCTTGATGAAGTGGAGGAGATCATACGCTACAAATTCAGGAACAAGAAGTTACTAGAGGAAGCCTTTACGCATTCCTCTTTTACTTGCGGCTTTTCCTATGAGCGTTTGGAGTACGTAGGCGATGCGGTGCTCGGTTTATTGTTTTGCCGGGCACATTATTCTCTGTACCCGGATTTAGCTCCCGGAAAGCTGACCCGCCTCCGGGCGGCCAACGTCGATACCGAGAAGCTTGCACGTGTGGCACTCCGGCAAGGCTTCCACCGGTACCTCCGCCACAGGAAACCTTACCTTGTAGATCAAATTCAAGAGTTTTCACGAGCGGTTATTGAGTATCCATTGCACTCAAATGGTCTTATTGACGCTCCGAAAGACCTTGCAGATGTTGTAGAGTCCACTATTGGGGCGGTTTTCATGGACTGCAACTCCATAGAGGTTGTGTGGCATGTGTTTAAGGGCTTGCTAGAGCCGATCATAACTCAGGAGACGATACAGATACATCCAAACACACAGCTTCTTGAGATGTGTCAAAAGAACCGCCGGAGTCTCAAGTATGTAGATTCATGGGAGAAGGACTATAGTGTTGGGTGTGTCATTGATGGTCAGATTGTTGGAAGAGGTACCTATAGTCTTCGGAAGGACGTTGCGCTAAACCGAGCAGCAAAAGATGCATTGGACAATAGGTGGAAGTGGATGGAGAATAATGCTACTGCCATTGCTCGACATGTGACGGAGGAGCCTTCGGAACCGGTGCTAGTGAAGAATATGAACATGGAGAATAGTGATGAAGACGCTATTAGCTCTGTGGAGCAGGCTGAGGAACCAAGTGTCAGTTCTTTGGTGCCGGTTACTCCAGGAAAGAAAGATATGAAGGAGGATCTAGAGACTAATGACACTTCTGTTCAAGGTCCGAATGTTTTGAGTGAAGAGACTACTTCATATAACGAGACTAATGTTACTCCTCCTCGAGGTCAGATAGAAATGCATGCCATAAATTCTCTTCAGGGGAATGGGATTGGTGATGAGTTTATTGGACTCTCTAGAGGACAACGAAAGCGCCTCCGGAAAAGACAACGGATGATTTCGGCTAAGTGGCTAACACAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3 Ribonuclease_3 dsrm

Protein Analysis

419

Amino Acids

47.57

Weight (kDa)

5.52

Isoelectric Point (pI)

44.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	65 - 190	5.7e-13	Ribonuclease-III-like
Ribonuclease_3	PF00636	85 - 191	1.7e-20	Ribonuclease III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15417 AT4G15417
fragaria_vesca	FvH4_5g08550 FvH4_6g42650
malus_domestica	MD09G1111700.v1.1 MD17G1102000.v1.1
prunus_persica	Prupe.3G213200_v2.0.a1
pyrus_communis	pycom09g03630 pycom17g09640
rosa_chinensis	RchiOBHm_Chr2g0158531 RchiOBHm_Chr7g0189841
rosa_laevigata	RLG00000004582 RLG00000021094
rosa_multiflora	Rmu_co8278635.1_g000001 Rmu_sc0000512.1_g000018 Rmu_sc0005896.1_g000003 Rmu_sc0005896.1_g000004 Rmu_sc0017496.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091270 Rroxscaffold_3G00265090
rosa_rugosa	Rorug02G0469800 Rorug06G0500300
rosa_samantha	Rh2AG535800 Rh2BG549000 Rh2CG519500 Rh2DG558700 Rh7AG105600 Rh7BG108400 Rh7CG110400 Rh7DG108700
rosa_wichuraiana	Rw2G044370 Rw7G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1116
Acc65I	GGTACC	2 cut(s)	417, 770
AccB1I	GGYRCC	3 cut(s)	417, 770, 991
AccBSI	CCGCTC	1 cut(s)	473
AccIII	TCCGGA	1 cut(s)	1212
AciI	CCGC	8 cut(s)	240, 278, 349, 359, 424, 473, 557, 688
AclWI	GGATC	1 cut(s)	1035
AcoI	YGGCCR	2 cut(s)	9, 360
AcsI	RAATTY	3 cut(s)	185, 453, 1144
AcuI	CTGAAG	1 cut(s)	1136
AcvI	CACGTG	1 cut(s)	389
AfaI	GTAC	4 cut(s)	266, 320, 419, 772
AfiI	CCNNNNNNNGG	5 cut(s)	354, 355, 358, 552, 1118
AflIII	ACRYGT	2 cut(s)	388, 874
AgeI	ACCGGT	2 cut(s)	414, 898
AgsI	TTSAA	2 cut(s)	458, 1055
AjnI	CCWGG	1 cut(s)	1003
AjuI	GAANNNNNNNTTGG	2 cut(s)	967, 999
AluBI	AGCT	6 cut(s)	117, 332, 343, 382, 664, 951
AluI	AGCT	6 cut(s)	117, 332, 343, 382, 664, 951
Alw21I	GWGCWC	1 cut(s)	285
Alw26I	GTCTC	5 cut(s)	629, 701, 1028, 1073, 1091
AlwI	GGATC	1 cut(s)	1035
Ama87I	CYCGRG	1 cut(s)	1116
Aor13HI	TCCGGA	1 cut(s)	1212
AoxI	GGCC	2 cut(s)	9, 360
ApeKI	GCWGC	1 cut(s)	809
ApoI	RAATTY	3 cut(s)	185, 453, 1144
AsiGI	ACCGGT	2 cut(s)	414, 898
Asp718I	GGTACC	2 cut(s)	417, 770
AspLEI	GCGC	2 cut(s)	799, 1209
AspS9I	GGNCC	1 cut(s)	1058
AsuC2I	CCSGG	4 cut(s)	302, 323, 336, 356
AsuHPI	GGTGA	1 cut(s)	1181
AvaI	CYCGRG	1 cut(s)	1116
AvaII	GGWCC	1 cut(s)	1058
BaeGI	GKGCMC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	11
BanI	GGYRCC	3 cut(s)	417, 770, 991
BauI	CACGAG	1 cut(s)	468
BbrPI	CACGTG	1 cut(s)	389
BbsI	GAAGAC	2 cut(s)	773, 945
Bbv12I	GWGCWC	1 cut(s)	285
BbvCI	CCTCAGC	1 cut(s)	966
BbvI	GCAGC	1 cut(s)	821
BccI	CCATC	2 cut(s)	743, 838
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciT130I	CCWGG	1 cut(s)	1005
BciVI	GTATCC	1 cut(s)	495
BclI	TGATCA	1 cut(s)	25
BcnI	CCSGG	4 cut(s)	302, 323, 336, 356
BcoDI	GTCTC	5 cut(s)	629, 701, 1028, 1073, 1091
BfaI	CTAG	5 cut(s)	206, 614, 905, 1031, 1191
BfmI	CTRYAG	2 cut(s)	727, 775
BfoI	RGCGCY	1 cut(s)	1210
BfuI	GTATCC	1 cut(s)	495
BisI	GCNGC	3 cut(s)	241, 360, 810
BlsI	GCNGC	3 cut(s)	242, 361, 811
Bme1390I	CCNGG	5 cut(s)	302, 323, 336, 356, 1005
Bme18I	GGWCC	1 cut(s)	1058
BmeT110I	CYCGRG	1 cut(s)	1116
BmgT120I	GGNCC	1 cut(s)	1058
BmiI	GGNNCC	7 cut(s)	147, 419, 772, 888, 897, 972, 993
BmrFI	CCNGG	5 cut(s)	302, 323, 336, 356, 1005
BmsI	GCATC	2 cut(s)	265, 808
BpiI	GAAGAC	2 cut(s)	773, 945
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	987
Bpu10I	CCTNAGC	1 cut(s)	966
BpuEI	CTTGAG	2 cut(s)	683, 689
BpuMI	CCSGG	4 cut(s)	302, 323, 336, 356
BsaAI	YACGTR	2 cut(s)	268, 389
BsaJI	CCNNGG	1 cut(s)	60
BsaWI	WCCGGW	3 cut(s)	414, 898, 1212
BsaXI	ACNNNNNCTCC	2 cut(s)	560, 590
Bsc4I	CCNNNNNNNGG	5 cut(s)	354, 355, 358, 552, 1118
Bse118I	RCCGGY	3 cut(s)	414, 898, 994
Bse3DI	GCAATG	2 cut(s)	488, 864
BseAI	TCCGGA	1 cut(s)	1212
BseBI	CCWGG	1 cut(s)	1005
BseDI	CCNNGG	1 cut(s)	60
BseGI	GGATG	3 cut(s)	649, 849, 1233
BseLI	CCNNNNNNNGG	5 cut(s)	354, 355, 358, 552, 1118
BseMI	GCAATG	2 cut(s)	488, 864
BseMII	CTCAG	2 cut(s)	644, 957
BseRI	GAGGAG	4 cut(s)	182, 899, 1101, 1104
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	821
BshFI	GGCC	2 cut(s)	11, 362
BshNI	GGYRCC	3 cut(s)	417, 770, 991
BshTI	ACCGGT	2 cut(s)	414, 898
BsiHKAI	GWGCWC	1 cut(s)	285
BsiHKCI	CYCGRG	1 cut(s)	1116
BslI	CCNNNNNNNGG	5 cut(s)	354, 355, 358, 552, 1118
BsmAI	GTCTC	5 cut(s)	629, 701, 1028, 1073, 1091
BsmBI	CGTCTC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	2 cut(s)	11, 362
BsoBI	CYCGRG	1 cut(s)	1116
Bsp1286I	GDGCHC	2 cut(s)	285, 307
Bsp13I	TCCGGA	1 cut(s)	1212
Bsp143I	GATC	5 cut(s)	25, 171, 448, 621, 1027
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	8 cut(s)	240, 278, 349, 359, 424, 473, 557, 688
BspANI	GGCC	2 cut(s)	11, 362
BspCNI	CTCAG	2 cut(s)	643, 958
BspEI	TCCGGA	1 cut(s)	1212
BspLI	GGNNCC	7 cut(s)	147, 419, 772, 888, 897, 972, 993
BspPI	GGATC	1 cut(s)	1035
BspT107I	GGYRCC	3 cut(s)	417, 770, 991
BsrBI	CCGCTC	1 cut(s)	473
BsrDI	GCAATG	2 cut(s)	488, 864
BsrFI	RCCGGY	3 cut(s)	414, 898, 994
BssAI	RCCGGY	3 cut(s)	414, 898, 994
BssECI	CCNNGG	1 cut(s)	60
BssMI	GATC	5 cut(s)	25, 171, 448, 621, 1027
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	60
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	1005
Bst4CI	ACNGT	2 cut(s)	23, 91
Bst6I	CTCTTC	3 cut(s)	760, 1071, 1155
BstAPI	GCANNNNNTGC	1 cut(s)	818
BstBAI	YACGTR	2 cut(s)	268, 389
BstC8I	GCNNGC	4 cut(s)	384, 611, 963, 1137
BstDEI	CTNAG	3 cut(s)	630, 966, 1239
BstDSI	CCRYGG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	1116
BstF5I	GGATG	3 cut(s)	649, 849, 1233
BstH2I	RGCGCY	1 cut(s)	1210
BstHHI	GCGC	2 cut(s)	799, 1209
BstKTI	GATC	5 cut(s)	28, 174, 451, 624, 1030
BstMAI	GTCTC	5 cut(s)	629, 701, 1028, 1073, 1091
BstMBI	GATC	5 cut(s)	25, 171, 448, 621, 1027
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 818
BstNI	CCWGG	1 cut(s)	1005
BstNSI	RCATGY	3 cut(s)	599, 878, 1139
BstSCI	CCNGG	5 cut(s)	300, 321, 334, 354, 1003
BstSFI	CTRYAG	2 cut(s)	727, 775
BstSLI	GKGCMC	1 cut(s)	307
BstSNI	TACGTA	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	821
BstV2I	GAAGAC	2 cut(s)	773, 945
BstX2I	RGATCY	1 cut(s)	1027
BstYI	RGATCY	1 cut(s)	1027
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	2 cut(s)	11, 362
BtgI	CCRYGG	1 cut(s)	60
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	3 cut(s)	649, 849, 1233
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	28, 111
Cac8I	GCNNGC	4 cut(s)	384, 611, 963, 1137
CfoI	GCGC	2 cut(s)	799, 1209
Cfr10I	RCCGGY	3 cut(s)	414, 898, 994
Cfr13I	GGNCC	1 cut(s)	1058
CseI	GACGC	2 cut(s)	521, 950
Csp6I	GTAC	4 cut(s)	265, 319, 418, 771
CspAI	ACCGGT	2 cut(s)	414, 898
CviAII	CATG	8 cut(s)	61, 97, 565, 596, 714, 875, 922, 1136
CviQI	GTAC	4 cut(s)	265, 319, 418, 771
DdeI	CTNAG	3 cut(s)	630, 966, 1239
DpnI	GATC	5 cut(s)	27, 173, 450, 623, 1029
DpnII	GATC	5 cut(s)	25, 171, 448, 621, 1027
EaeI	YGGCCR	2 cut(s)	9, 360
Eam1104I	CTCTTC	3 cut(s)	760, 1071, 1155
EarI	CTCTTC	3 cut(s)	760, 1071, 1155
EciI	GGCGGA	1 cut(s)	413
Eco105I	TACGTA	1 cut(s)	268
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	1058
Eco57I	CTGAAG	1 cut(s)	1136
Eco72I	CACGTG	1 cut(s)	389
Eco88I	CYCGRG	1 cut(s)	1116
EcoNI	CCTNNNNNAGG	1 cut(s)	1116
EcoRII	CCWGG	1 cut(s)	1003
EcoT14I	CCWWGG	1 cut(s)	60
EcoT22I	ATGCAT	2 cut(s)	823, 1137
ErhI	CCWWGG	1 cut(s)	60
Esp3I	CGTCTC	1 cut(s)	629
FaeI	CATG	8 cut(s)	64, 100, 568, 599, 717, 878, 925, 1139
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FatI	CATG	8 cut(s)	60, 96, 564, 595, 713, 874, 921, 1135
FauI	CCCGC	1 cut(s)	356
FbaI	TGATCA	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	241, 360, 810
FokI	GGATG	3 cut(s)	636, 856, 1240
Fsp4HI	GCNGC	3 cut(s)	241, 360, 810
FspBI	CTAG	5 cut(s)	206, 614, 905, 1031, 1191
GlaI	GCGC	2 cut(s)	798, 1208
GluI	GCNGC	3 cut(s)	241, 360, 810
GsuI	CTGGAG	1 cut(s)	987
HaeII	RGCGCY	1 cut(s)	1210
HaeIII	GGCC	2 cut(s)	11, 362
HgaI	GACGC	2 cut(s)	521, 950
HhaI	GCGC	2 cut(s)	799, 1209
Hin1II	CATG	8 cut(s)	64, 100, 568, 599, 717, 878, 925, 1139
Hin6I	GCGC	2 cut(s)	797, 1207
HinP1I	GCGC	2 cut(s)	797, 1207
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HindIII	AAGCTT	2 cut(s)	115, 380
HinfI	GANTC	6 cut(s)	131, 151, 542, 694, 710, 1185
HphI	GGTGA	1 cut(s)	1181
Hpy166II	GTNNAC	3 cut(s)	94, 135, 546
Hpy188I	TCNGA	6 cut(s)	519, 756, 786, 895, 1062, 1125
Hpy188III	TCNNGA	9 cut(s)	155, 190, 458, 468, 632, 668, 1031, 1191, 1213
Hpy8I	GTNNAC	3 cut(s)	94, 135, 546
Hpy99I	CGWCG	1 cut(s)	371
HpyAV	CCTTC	6 cut(s)	35, 136, 715, 781, 900, 1015
HpyCH4III	ACNGT	2 cut(s)	23, 91
HpyCH4IV	ACGT	4 cut(s)	267, 366, 388, 792
HpyCH4V	TGCA	6 cut(s)	386, 493, 530, 573, 821, 1135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 818
HpyF3I	CTNAG	3 cut(s)	630, 966, 1239
HpySE526I	ACGT	4 cut(s)	267, 366, 388, 792
Hsp92II	CATG	8 cut(s)	64, 100, 568, 599, 717, 878, 925, 1139
HspAI	GCGC	2 cut(s)	797, 1207
Kpn2I	TCCGGA	1 cut(s)	1212
KpnI	GGTACC	2 cut(s)	421, 774
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	5 cut(s)	25, 171, 448, 621, 1027
LmnI	GCTCC	5 cut(s)	145, 337, 520, 886, 958
Lsp1109I	GCAGC	1 cut(s)	821
LweI	GCATC	2 cut(s)	265, 808
MaeI	CTAG	5 cut(s)	206, 614, 905, 1031, 1191
MaeII	ACGT	4 cut(s)	267, 366, 388, 792
MaeIII	GTNAC	4 cut(s)	201, 877, 997, 1105
MalI	GATC	5 cut(s)	27, 173, 450, 623, 1029
MbiI	CCGCTC	1 cut(s)	473
MboI	GATC	5 cut(s)	25, 171, 448, 621, 1027
MboII	GAAGA	7 cut(s)	50, 773, 777, 922, 950, 1088, 1142
MflI	RGATCY	1 cut(s)	1027
MhlI	GDGCHC	2 cut(s)	285, 307
MlsI	TGGCCA	1 cut(s)	11
MluCI	AATT	3 cut(s)	185, 453, 1144
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	5 cut(s)	140, 160, 551, 703, 1179
MmeI	TCCRAC	2 cut(s)	80, 742
Mox20I	TGGCCA	1 cut(s)	11
Mph1103I	ATGCAT	2 cut(s)	823, 1137
MroI	TCCGGA	1 cut(s)	1212
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	1 cut(s)	603
MslI	CAYNNNNRTG	2 cut(s)	21, 498
Msp20I	TGGCCA	1 cut(s)	11
MspR9I	CCNGG	5 cut(s)	302, 323, 336, 356, 1005
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	1005
MwoI	GCNNNNNNNGC	2 cut(s)	392, 818
NciI	CCSGG	4 cut(s)	302, 323, 336, 356
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	5 cut(s)	25, 171, 448, 621, 1027
NlaIII	CATG	8 cut(s)	64, 100, 568, 599, 717, 878, 925, 1139
NlaIV	GGNNCC	7 cut(s)	147, 419, 772, 888, 897, 972, 993
NmeAIII	GCCGAG	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	877
NsiI	ATGCAT	2 cut(s)	823, 1137
NspI	RCATGY	3 cut(s)	599, 878, 1139
PaeI	GCATGC	1 cut(s)	1139
PaeR7I	CTCGAG	1 cut(s)	1116
PciI	ACATGT	1 cut(s)	874
PcsI	WCGNNNNNNNCGW	2 cut(s)	146, 372
PctI	GAATGC	1 cut(s)	223
PfeI	GAWTC	1 cut(s)	710
PflFI	GACNNNGTC	1 cut(s)	130
PfoI	TCCNGGA	2 cut(s)	334, 1003
PinAI	ACCGGT	2 cut(s)	414, 898
PkrI	GCNGC	3 cut(s)	242, 361, 811
PleI	GAGTC	5 cut(s)	139, 159, 550, 702, 1179
PmaCI	CACGTG	1 cut(s)	389
PmlI	CACGTG	1 cut(s)	389
PpsI	GAGTC	5 cut(s)	139, 159, 550, 702, 1179
Ppu21I	YACGTR	2 cut(s)	268, 389
PscI	ACATGT	1 cut(s)	874
Psp6I	CCWGG	1 cut(s)	1003
PspCI	CACGTG	1 cut(s)	389
PspGI	CCWGG	1 cut(s)	1003
PspN4I	GGNNCC	7 cut(s)	147, 419, 772, 888, 897, 972, 993
PspPI	GGNCC	1 cut(s)	1058
PspXI	VCTCGAGB	1 cut(s)	1116
PsuI	RGATCY	1 cut(s)	1027
PsyI	GACNNNGTC	1 cut(s)	130
RsaI	GTAC	4 cut(s)	266, 320, 419, 772
RsaNI	GTAC	4 cut(s)	265, 319, 418, 771
RseI	CAYNNNNRTG	2 cut(s)	21, 498
SaqAI	TTAA	1 cut(s)	603
SatI	GCNGC	3 cut(s)	241, 360, 810
Sau3AI	GATC	5 cut(s)	25, 171, 448, 621, 1027
Sau96I	GGNCC	1 cut(s)	1058
SchI	GAGTC	5 cut(s)	140, 160, 551, 703, 1179
ScrFI	CCNGG	5 cut(s)	302, 323, 336, 356, 1005
SduI	GDGCHC	2 cut(s)	285, 307
SfaNI	GCATC	2 cut(s)	265, 808
SfcI	CTRYAG	2 cut(s)	727, 775
Sfr274I	CTCGAG	1 cut(s)	1116
SinI	GGWCC	1 cut(s)	1058
SlaI	CTCGAG	1 cut(s)	1116
SmiMI	CAYNNNNRTG	2 cut(s)	21, 498
SmlI	CTYRAG	3 cut(s)	668, 698, 1116
SmoI	CTYRAG	3 cut(s)	668, 698, 1116
SnaBI	TACGTA	1 cut(s)	268
SphI	GCATGC	1 cut(s)	1139
Sse9I	AATT	3 cut(s)	185, 453, 1144
SsiI	CCGC	8 cut(s)	240, 278, 349, 359, 424, 473, 557, 688
SspMI	CTAG	5 cut(s)	206, 614, 905, 1031, 1191
StyD4I	CCNGG	5 cut(s)	300, 321, 334, 354, 1003
StyI	CCWWGG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	23, 91
TaiI	ACGT	4 cut(s)	270, 369, 391, 795
TaqI	TCGA	4 cut(s)	140, 369, 871, 1117
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	3 cut(s)	185, 453, 1144
TauI	GCSGC	2 cut(s)	243, 362
TfiI	GAWTC	1 cut(s)	710
Tru1I	TTAA	1 cut(s)	603
Tru9I	TTAA	1 cut(s)	603
TscAI	CASTG	2 cut(s)	28, 111
TseFI	GTSAC	1 cut(s)	877
TseI	GCWGC	1 cut(s)	809
Tsp45I	GTSAC	1 cut(s)	877
TspDTI	ATGAA	8 cut(s)	113, 174, 553, 702, 932, 951, 1034, 1077
TspGWI	ACGGA	2 cut(s)	896, 1240
TspRI	CASTG	2 cut(s)	28, 111
Tth111I	GACNNNGTC	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	1058
XagI	CCTNNNNNAGG	1 cut(s)	1116
XapI	RAATTY	3 cut(s)	185, 453, 1144
XbaI	TCTAGA	2 cut(s)	1030, 1190
XceI	RCATGY	3 cut(s)	599, 878, 1139
XhoI	CTCGAG	1 cut(s)	1116
XspI	CTAG	5 cut(s)	206, 614, 905, 1031, 1191
Zsp2I	ATGCAT	2 cut(s)	823, 1137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.