Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8278635.1

Orthogroup ID

OG0004428

Physical Location & Seq

Genomic Coordinates Forward (+)

54 .. 844

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8278635.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 791 bp

atggaagcacaaccccaagaaacccctactgttcacatgaacgcagtgatgcaaagcttattacagaccgagtcaacctcgaaggagccgagtcttgatgaagtggaggagatcatacgctacaaattcaggaacaagaagttactagaggaagcctttacgcattcctcttttacttgcggcttttcctatgagcgtttggagtacgtaggcgatgcggtgctcggtttattgttttgccgggcacattattctctgtacccggatttagctcccggaaagctgacccgcctccgggcggccaacgtcgataccgagaagcttgcacgtgtggcactccggcaaggcttccaccggtacctccgccacaggaaaccttaccttgtagatcaaattcaagagttttcacgagcggttattgagtatccattgcactcaaatggtcttattgacgctccgaaagaccttgcagatgttgtagagtccactattggggcggttttcatggactgcaactccatagaggttgtgtggcatgtgtttaagggcttgctagagccgatcataactcaggagacgatacagatacatccaaacacacagcttcttgagatgtgtcaaaagaaccgccggagtctcaagtatgtagattcatgggagaaggactatagtgttgggtgtgtcattgatggtcagattgttggaagaggtacctatagtcttcggaaggacgttgcgctaaaccgagcagcaaaagatgcattggacaataggtggaagtggatggagaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3 Ribonuclease_3 dsrm

Protein Analysis

263

Amino Acids

30.28

Weight (kDa)

6.27

Isoelectric Point (pI)

36.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15417 AT4G15417
fragaria_vesca	FvH4_5g08550 FvH4_6g42650
malus_domestica	MD09G1111700.v1.1 MD17G1102000.v1.1
prunus_persica	Prupe.3G213200_v2.0.a1
pyrus_communis	pycom09g03630 pycom17g09640
rosa_chinensis	RchiOBHm_Chr2g0158531 RchiOBHm_Chr7g0189841
rosa_laevigata	RLG00000004582 RLG00000021094
rosa_multiflora	Rmu_co8278635.1_g000001 Rmu_sc0000512.1_g000018 Rmu_sc0005896.1_g000003 Rmu_sc0005896.1_g000004 Rmu_sc0017496.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091270 Rroxscaffold_3G00265090
rosa_rugosa	Rorug02G0469800 Rorug06G0500300
rosa_samantha	Rh2AG535800 Rh2BG549000 Rh2CG519500 Rh2DG558700 Rh7AG105600 Rh7BG108400 Rh7CG110400 Rh7DG108700
rosa_wichuraiana	Rw2G044370 Rw7G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	357, 710
AccB1I	GGYRCC	2 cut(s)	357, 710
AccBSI	CCGCTC	1 cut(s)	413
AciI	CCGC	8 cut(s)	180, 218, 289, 299, 364, 413, 497, 628
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	2 cut(s)	125, 393
AcvI	CACGTG	1 cut(s)	329
AfaI	GTAC	4 cut(s)	206, 260, 359, 712
AfiI	CCNNNNNNNGG	4 cut(s)	294, 295, 298, 492
AflIII	ACRYGT	1 cut(s)	328
AgeI	ACCGGT	1 cut(s)	354
AgsI	TTSAA	1 cut(s)	398
AluBI	AGCT	5 cut(s)	57, 272, 283, 322, 604
AluI	AGCT	5 cut(s)	57, 272, 283, 322, 604
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	2 cut(s)	569, 641
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	749
ApoI	RAATTY	2 cut(s)	125, 393
AsiGI	ACCGGT	1 cut(s)	354
Asp718I	GGTACC	2 cut(s)	357, 710
AspLEI	GCGC	1 cut(s)	739
AsuC2I	CCSGG	4 cut(s)	242, 263, 276, 296
BaeGI	GKGCMC	1 cut(s)	247
BanI	GGYRCC	2 cut(s)	357, 710
BauI	CACGAG	1 cut(s)	408
BbrPI	CACGTG	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	713
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	761
BccI	CCATC	2 cut(s)	683, 778
BcgI	CGANNNNNNTGC	2 cut(s)	305, 339
BciVI	GTATCC	1 cut(s)	435
BcnI	CCSGG	4 cut(s)	242, 263, 276, 296
BcoDI	GTCTC	2 cut(s)	569, 641
BfaI	CTAG	2 cut(s)	146, 554
BfmI	CTRYAG	2 cut(s)	667, 715
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	3 cut(s)	181, 300, 750
BlsI	GCNGC	3 cut(s)	182, 301, 751
Bme1390I	CCNGG	4 cut(s)	242, 263, 276, 296
BmiI	GGNNCC	3 cut(s)	87, 359, 712
BmrFI	CCNGG	4 cut(s)	242, 263, 276, 296
BmsI	GCATC	3 cut(s)	39, 205, 748
BpiI	GAAGAC	1 cut(s)	713
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpuEI	CTTGAG	2 cut(s)	623, 629
BpuMI	CCSGG	4 cut(s)	242, 263, 276, 296
BsaAI	YACGTR	2 cut(s)	208, 329
BsaWI	WCCGGW	1 cut(s)	354
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	4 cut(s)	294, 295, 298, 492
Bse118I	RCCGGY	1 cut(s)	354
Bse3DI	GCAATG	1 cut(s)	428
BseGI	GGATG	2 cut(s)	589, 789
BseLI	CCNNNNNNNGG	4 cut(s)	294, 295, 298, 492
BseMI	GCAATG	1 cut(s)	428
BseMII	CTCAG	1 cut(s)	584
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	761
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	2 cut(s)	357, 710
BshTI	ACCGGT	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	225
BsiSI	CCGG	7 cut(s)	241, 263, 276, 295, 340, 355, 631
BslI	CCNNNNNNNGG	4 cut(s)	294, 295, 298, 492
BsmAI	GTCTC	2 cut(s)	569, 641
BsmBI	CGTCTC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	163
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	2 cut(s)	225, 247
Bsp143I	GATC	3 cut(s)	111, 388, 561
BspACI	CCGC	8 cut(s)	180, 218, 289, 299, 364, 413, 497, 628
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	583
BspLI	GGNNCC	3 cut(s)	87, 359, 712
BspT107I	GGYRCC	2 cut(s)	357, 710
BsrBI	CCGCTC	1 cut(s)	413
BsrDI	GCAATG	1 cut(s)	428
BsrFI	RCCGGY	1 cut(s)	354
BssAI	RCCGGY	1 cut(s)	354
BssMI	GATC	3 cut(s)	111, 388, 561
BssSI	CACGAG	1 cut(s)	408
Bst2BI	CACGAG	1 cut(s)	408
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	700
BstAPI	GCANNNNNTGC	1 cut(s)	758
BstBAI	YACGTR	2 cut(s)	208, 329
BstC8I	GCNNGC	2 cut(s)	324, 551
BstDEI	CTNAG	1 cut(s)	570
BstF5I	GGATG	2 cut(s)	589, 789
BstHHI	GCGC	1 cut(s)	739
BstKTI	GATC	3 cut(s)	114, 391, 564
BstMAI	GTCTC	2 cut(s)	569, 641
BstMBI	GATC	3 cut(s)	111, 388, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 758
BstNSI	RCATGY	1 cut(s)	539
BstSCI	CCNGG	4 cut(s)	240, 261, 274, 294
BstSFI	CTRYAG	2 cut(s)	667, 715
BstSLI	GKGCMC	1 cut(s)	247
BstSNI	TACGTA	1 cut(s)	208
BstV1I	GCAGC	1 cut(s)	761
BstV2I	GAAGAC	1 cut(s)	713
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	302
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	589, 789
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	324, 551
CfoI	GCGC	1 cut(s)	739
Cfr10I	RCCGGY	1 cut(s)	354
CseI	GACGC	1 cut(s)	461
Csp6I	GTAC	4 cut(s)	205, 259, 358, 711
CspAI	ACCGGT	1 cut(s)	354
CviAII	CATG	4 cut(s)	37, 505, 536, 654
CviQI	GTAC	4 cut(s)	205, 259, 358, 711
DdeI	CTNAG	1 cut(s)	570
DpnI	GATC	3 cut(s)	113, 390, 563
DpnII	GATC	3 cut(s)	111, 388, 561
EaeI	YGGCCR	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	700
EarI	CTCTTC	1 cut(s)	700
EciI	GGCGGA	1 cut(s)	353
Eco105I	TACGTA	1 cut(s)	208
Eco72I	CACGTG	1 cut(s)	329
EcoT22I	ATGCAT	1 cut(s)	763
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	4 cut(s)	40, 508, 539, 657
FatI	CATG	4 cut(s)	36, 504, 535, 653
FauI	CCCGC	1 cut(s)	296
Fnu4HI	GCNGC	3 cut(s)	181, 300, 750
FokI	GGATG	1 cut(s)	576
Fsp4HI	GCNGC	3 cut(s)	181, 300, 750
FspBI	CTAG	2 cut(s)	146, 554
GlaI	GCGC	1 cut(s)	738
GluI	GCNGC	3 cut(s)	181, 300, 750
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	7 cut(s)	241, 263, 276, 295, 340, 355, 631
HgaI	GACGC	1 cut(s)	461
HhaI	GCGC	1 cut(s)	739
Hin1II	CATG	4 cut(s)	40, 508, 539, 657
Hin6I	GCGC	1 cut(s)	737
HinP1I	GCGC	1 cut(s)	737
HincII	GTYRAC	1 cut(s)	75
HindII	GTYRAC	1 cut(s)	75
HindIII	AAGCTT	2 cut(s)	55, 320
HinfI	GANTC	5 cut(s)	71, 91, 482, 634, 650
HpaII	CCGG	7 cut(s)	241, 263, 276, 295, 340, 355, 631
Hpy166II	GTNNAC	3 cut(s)	34, 75, 486
Hpy188I	TCNGA	3 cut(s)	459, 696, 726
Hpy188III	TCNNGA	6 cut(s)	95, 130, 398, 408, 572, 608
Hpy8I	GTNNAC	3 cut(s)	34, 75, 486
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	76, 655, 721
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	4 cut(s)	207, 306, 328, 732
HpyCH4V	TGCA	6 cut(s)	52, 326, 433, 470, 513, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 758
HpyF3I	CTNAG	1 cut(s)	570
HpySE526I	ACGT	4 cut(s)	207, 306, 328, 732
Hsp92II	CATG	4 cut(s)	40, 508, 539, 657
HspAI	GCGC	1 cut(s)	737
KpnI	GGTACC	2 cut(s)	361, 714
Kzo9I	GATC	3 cut(s)	111, 388, 561
LmnI	GCTCC	3 cut(s)	85, 277, 460
Lsp1109I	GCAGC	1 cut(s)	761
LweI	GCATC	3 cut(s)	39, 205, 748
MaeI	CTAG	2 cut(s)	146, 554
MaeII	ACGT	4 cut(s)	207, 306, 328, 732
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	3 cut(s)	113, 390, 563
MbiI	CCGCTC	1 cut(s)	413
MboI	GATC	3 cut(s)	111, 388, 561
MboII	GAAGA	2 cut(s)	713, 717
MhlI	GDGCHC	2 cut(s)	225, 247
MluCI	AATT	2 cut(s)	125, 393
MlyI	GAGTC	4 cut(s)	80, 100, 491, 643
MmeI	TCCRAC	1 cut(s)	682
MnlI	CCTC	8 cut(s)	88, 100, 142, 178, 302, 371, 517, 701
Mph1103I	ATGCAT	1 cut(s)	763
MseI	TTAA	1 cut(s)	543
MslI	CAYNNNNRTG	1 cut(s)	438
MspI	CCGG	7 cut(s)	241, 263, 276, 295, 340, 355, 631
MspR9I	CCNGG	4 cut(s)	242, 263, 276, 296
Mva1269I	GAATGC	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	332, 758
NciI	CCSGG	4 cut(s)	242, 263, 276, 296
NdeII	GATC	3 cut(s)	111, 388, 561
NlaIII	CATG	4 cut(s)	40, 508, 539, 657
NlaIV	GGNNCC	3 cut(s)	87, 359, 712
NmeAIII	GCCGAG	1 cut(s)	114
NsiI	ATGCAT	1 cut(s)	763
NspI	RCATGY	1 cut(s)	539
PcsI	WCGNNNNNNNCGW	2 cut(s)	86, 312
PctI	GAATGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	650
PflFI	GACNNNGTC	1 cut(s)	70
PfoI	TCCNGGA	1 cut(s)	274
PinAI	ACCGGT	1 cut(s)	354
PkrI	GCNGC	3 cut(s)	182, 301, 751
PleI	GAGTC	4 cut(s)	79, 99, 490, 642
PmaCI	CACGTG	1 cut(s)	329
PmlI	CACGTG	1 cut(s)	329
PpsI	GAGTC	4 cut(s)	79, 99, 490, 642
Ppu21I	YACGTR	2 cut(s)	208, 329
PspCI	CACGTG	1 cut(s)	329
PspN4I	GGNNCC	3 cut(s)	87, 359, 712
PsyI	GACNNNGTC	1 cut(s)	70
RsaI	GTAC	4 cut(s)	206, 260, 359, 712
RsaNI	GTAC	4 cut(s)	205, 259, 358, 711
RseI	CAYNNNNRTG	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	3 cut(s)	181, 300, 750
Sau3AI	GATC	3 cut(s)	111, 388, 561
SchI	GAGTC	4 cut(s)	80, 100, 491, 643
ScrFI	CCNGG	4 cut(s)	242, 263, 276, 296
SduI	GDGCHC	2 cut(s)	225, 247
SfaNI	GCATC	3 cut(s)	39, 205, 748
SfcI	CTRYAG	2 cut(s)	667, 715
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	2 cut(s)	608, 638
SmoI	CTYRAG	2 cut(s)	608, 638
SnaBI	TACGTA	1 cut(s)	208
Sse9I	AATT	2 cut(s)	125, 393
SsiI	CCGC	8 cut(s)	180, 218, 289, 299, 364, 413, 497, 628
SspMI	CTAG	2 cut(s)	146, 554
StyD4I	CCNGG	4 cut(s)	240, 261, 274, 294
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	4 cut(s)	210, 309, 331, 735
TaqI	TCGA	2 cut(s)	80, 309
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	2 cut(s)	125, 393
TauI	GCSGC	2 cut(s)	183, 302
TfiI	GAWTC	1 cut(s)	650
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	1 cut(s)	749
TspDTI	ATGAA	4 cut(s)	53, 114, 493, 642
TspRI	CASTG	1 cut(s)	51
Tth111I	GACNNNGTC	1 cut(s)	70
XapI	RAATTY	2 cut(s)	125, 393
XceI	RCATGY	1 cut(s)	539
XspI	CTAG	2 cut(s)	146, 554
Zsp2I	ATGCAT	1 cut(s)	763

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.