Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005896.1

Orthogroup ID

OG0004428

Physical Location & Seq

Genomic Coordinates Reverse (-)

14096 .. 15480

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005896.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgggagccgaaccccaagaaactcctattcatatgaacgaagtgaaacagagcttgttagagaccgaatcaacaaccttgaccgagtcgtccctgccgagtctggatgaagtggaggagatcataggctacaaattcgagaacaagaacctgctagaagaggccttcacgcattcttcttttatgtgcagcttttcttacgagcgtttggagtacatcggcgacgccgtgctgaatctgttgtttagccgggaacattactttttgtacccggatttggctcccggaaagctgacccgcctcagggccgccaatgttgacaccgagaagctggcacgtgtggccctccgacacgggttccaccgctacctacaccacaagaaacgtttgcttgaagatcaaatccaagagtttgctcgagcagttctcgattatccattgcactccaatggtcttattgatgctccaaaagatcttgcagatcttgtggaatccacaatcggggcagttttcatggactgcaactcgatagacatagtctgggaggtacattctatggtcacacccatcactttctttgctagtcgcacttttgatttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3 Ribonuclease_3 dsrm

Protein Analysis

200

Amino Acids

22.96

Weight (kDa)

4.98

Isoelectric Point (pI)

40.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15417 AT4G15417
fragaria_vesca	FvH4_5g08550 FvH4_6g42650
malus_domestica	MD09G1111700.v1.1 MD17G1102000.v1.1
prunus_persica	Prupe.3G213200_v2.0.a1
pyrus_communis	pycom09g03630 pycom17g09640
rosa_chinensis	RchiOBHm_Chr2g0158531 RchiOBHm_Chr7g0189841
rosa_laevigata	RLG00000004582 RLG00000021094
rosa_multiflora	Rmu_co8278635.1_g000001 Rmu_sc0000512.1_g000018 Rmu_sc0005896.1_g000003 Rmu_sc0005896.1_g000004 Rmu_sc0017496.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091270 Rroxscaffold_3G00265090
rosa_rugosa	Rorug02G0469800 Rorug06G0500300
rosa_samantha	Rh2AG535800 Rh2BG549000 Rh2CG519500 Rh2DG558700 Rh7AG105600 Rh7BG108400 Rh7CG110400 Rh7DG108700
rosa_wichuraiana	Rw2G044370 Rw7G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	88
Acc36I	ACCTGC	1 cut(s)	159
AciI	CCGC	3 cut(s)	298, 309, 364
AclI	AACGTT	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	134
AcvI	CACGTG	1 cut(s)	338
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	3 cut(s)	215, 269, 549
AfiI	CCNNNNNNNGG	4 cut(s)	277, 303, 304, 501
AflIII	ACRYGT	1 cut(s)	337
AgsI	TTSAA	1 cut(s)	395
AluBI	AGCT	4 cut(s)	54, 192, 292, 331
AluI	AGCT	4 cut(s)	54, 192, 292, 331
Alw26I	GTCTC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	417
AoxI	GGCC	3 cut(s)	162, 306, 342
ApeKI	GCWGC	1 cut(s)	189
ApoI	RAATTY	1 cut(s)	134
AspS9I	GGNCC	2 cut(s)	306, 343
AsuC2I	CCSGG	3 cut(s)	251, 272, 285
AvaI	CYCGRG	1 cut(s)	417
AxyI	CCTNAGG	1 cut(s)	302
BbrPI	CACGTG	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	1 cut(s)	575
BceAI	ACGGC	1 cut(s)	212
BcnI	CCSGG	3 cut(s)	251, 272, 285
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	155, 582
BfuAI	ACCTGC	1 cut(s)	159
BglII	AGATCT	2 cut(s)	472, 481
BisI	GCNGC	2 cut(s)	190, 309
BlsI	GCNGC	2 cut(s)	191, 310
Bme1390I	CCNGG	3 cut(s)	251, 272, 285
BmeT110I	CYCGRG	1 cut(s)	417
BmgT120I	GGNCC	2 cut(s)	306, 343
BmiI	GGNNCC	3 cut(s)	7, 282, 359
BmrFI	CCNGG	3 cut(s)	251, 272, 285
BmsI	GCATC	1 cut(s)	451
BplI	GAGNNNNNCTC	2 cut(s)	411, 443
BpuMI	CCSGG	3 cut(s)	251, 272, 285
BsaAI	YACGTR	1 cut(s)	338
BsaHI	GRCGYC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	4 cut(s)	277, 303, 304, 501
Bse21I	CCTNAGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	437
BseGI	GGATG	1 cut(s)	112
BseLI	CCNNNNNNNGG	4 cut(s)	277, 303, 304, 501
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	1 cut(s)	316
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	201
BsgI	GTGCAG	1 cut(s)	208
BshFI	GGCC	3 cut(s)	164, 308, 344
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	3 cut(s)	250, 272, 285
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	4 cut(s)	277, 303, 304, 501
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	3 cut(s)	164, 308, 344
Bso31I	GGTCTC	1 cut(s)	56
BsoBI	CYCGRG	1 cut(s)	417
Bsp143I	GATC	4 cut(s)	120, 397, 472, 481
BspACI	CCGC	3 cut(s)	298, 309, 364
BspANI	GGCC	3 cut(s)	164, 308, 344
BspCNI	CTCAG	1 cut(s)	315
BspLI	GGNNCC	3 cut(s)	7, 282, 359
BspMI	ACCTGC	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	437
BssMI	GATC	4 cut(s)	120, 397, 472, 481
BssNI	GRCGYC	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	112
BstKTI	GATC	4 cut(s)	123, 400, 475, 484
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	4 cut(s)	120, 397, 472, 481
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstSCI	CCNGG	3 cut(s)	249, 270, 283
BstV1I	GCAGC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	472, 481
BstYI	RGATCY	2 cut(s)	472, 481
Bsu36I	CCTNAGG	1 cut(s)	302
BsuRI	GGCC	3 cut(s)	164, 308, 344
BtsCI	GGATG	1 cut(s)	112
BveI	ACCTGC	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	333
Cfr13I	GGNCC	2 cut(s)	306, 343
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	214, 268, 548
CviAII	CATG	1 cut(s)	514
CviQI	GTAC	3 cut(s)	214, 268, 548
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	4 cut(s)	122, 399, 474, 483
DpnII	GATC	4 cut(s)	120, 397, 472, 481
DrdI	GACNNNNNNGTC	1 cut(s)	88
DseDI	GACNNNNNNGTC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco147I	AGGCCT	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	56
Eco72I	CACGTG	1 cut(s)	338
Eco81I	CCTNAGG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	417
FaeI	CATG	1 cut(s)	517
FaiI	YATR	7 cut(s)	33, 35, 125, 185, 515, 536, 557
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	1 cut(s)	513
FauI	CCCGC	1 cut(s)	305
FauNDI	CATATG	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	190, 309
FokI	GGATG	1 cut(s)	119
Fsp4HI	GCNGC	2 cut(s)	190, 309
FspBI	CTAG	2 cut(s)	155, 582
GluI	GCNGC	2 cut(s)	190, 309
HaeIII	GGCC	3 cut(s)	164, 308, 344
HapII	CCGG	3 cut(s)	250, 272, 285
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	517
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	5 cut(s)	68, 86, 100, 235, 491
HpaII	CCGG	3 cut(s)	250, 272, 285
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	1 cut(s)	350
Hpy188III	TCNNGA	3 cut(s)	104, 139, 428
Hpy8I	GTNNAC	1 cut(s)	319
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	175
HpyCH4IV	ACGT	2 cut(s)	337, 385
HpyCH4V	TGCA	4 cut(s)	189, 442, 479, 522
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	2 cut(s)	337, 385
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	517
Kzo9I	GATC	4 cut(s)	120, 397, 472, 481
LmnI	GCTCC	3 cut(s)	5, 286, 469
LpnPI	CCDG	9 cut(s)	89, 107, 164, 263, 285, 289, 298, 317, 526
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	1 cut(s)	451
MaeI	CTAG	2 cut(s)	155, 582
MaeII	ACGT	2 cut(s)	337, 385
MaeIII	GTNAC	1 cut(s)	559
MalI	GATC	4 cut(s)	122, 399, 474, 483
MboI	GATC	4 cut(s)	120, 397, 472, 481
MboII	GAAGA	3 cut(s)	168, 170, 407
MflI	RGATCY	2 cut(s)	472, 481
MluCI	AATT	1 cut(s)	134
MlyI	GAGTC	2 cut(s)	95, 109
MmeI	TCCRAC	1 cut(s)	373
MnlI	CCTC	5 cut(s)	109, 154, 311, 356, 538
MslI	CAYNNNNRTG	1 cut(s)	447
MspI	CCGG	3 cut(s)	250, 272, 285
MspR9I	CCNGG	3 cut(s)	251, 272, 285
Mva1269I	GAATGC	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	341
NciI	CCSGG	3 cut(s)	251, 272, 285
NdeI	CATATG	1 cut(s)	33
NdeII	GATC	4 cut(s)	120, 397, 472, 481
NlaIII	CATG	1 cut(s)	517
NlaIV	GGNNCC	3 cut(s)	7, 282, 359
NmeAIII	GCCGAG	1 cut(s)	123
NmuCI	GTSAC	1 cut(s)	559
PaeR7I	CTCGAG	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	164
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 225
PctI	GAATGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	68, 235, 491
PflFI	GACNNNGTC	2 cut(s)	85, 536
PfoI	TCCNGGA	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	191, 310
PleI	GAGTC	2 cut(s)	94, 108
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
PpsI	GAGTC	2 cut(s)	94, 108
Ppu21I	YACGTR	1 cut(s)	338
Psp1406I	AACGTT	1 cut(s)	385
PspCI	CACGTG	1 cut(s)	338
PspN4I	GGNNCC	3 cut(s)	7, 282, 359
PspPI	GGNCC	2 cut(s)	306, 343
PspXI	VCTCGAGB	1 cut(s)	417
PsuI	RGATCY	2 cut(s)	472, 481
PsyI	GACNNNGTC	2 cut(s)	85, 536
RsaI	GTAC	3 cut(s)	215, 269, 549
RsaNI	GTAC	3 cut(s)	214, 268, 548
RseI	CAYNNNNRTG	1 cut(s)	447
SatI	GCNGC	2 cut(s)	190, 309
Sau3AI	GATC	4 cut(s)	120, 397, 472, 481
Sau96I	GGNCC	2 cut(s)	306, 343
SchI	GAGTC	2 cut(s)	95, 109
ScrFI	CCNGG	3 cut(s)	251, 272, 285
SfaNI	GCATC	1 cut(s)	451
Sfr274I	CTCGAG	1 cut(s)	417
SlaI	CTCGAG	1 cut(s)	417
SmiMI	CAYNNNNRTG	1 cut(s)	447
SmlI	CTYRAG	1 cut(s)	417
SmoI	CTYRAG	1 cut(s)	417
Sse9I	AATT	1 cut(s)	134
SseBI	AGGCCT	1 cut(s)	164
SsiI	CCGC	3 cut(s)	298, 309, 364
SspMI	CTAG	2 cut(s)	155, 582
StuI	AGGCCT	1 cut(s)	164
StyD4I	CCNGG	3 cut(s)	249, 270, 283
TaiI	ACGT	2 cut(s)	340, 388
TaqI	TCGA	4 cut(s)	138, 418, 429, 527
TaqII	GACCGA	2 cut(s)	80, 98
TasI	AATT	1 cut(s)	134
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	311
TfiI	GAWTC	3 cut(s)	68, 235, 491
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	1 cut(s)	189
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	4 cut(s)	20, 50, 123, 502
Tth111I	GACNNNGTC	2 cut(s)	85, 536
XapI	RAATTY	1 cut(s)	134
XhoI	CTCGAG	1 cut(s)	417
XspI	CTAG	2 cut(s)	155, 582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.