Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004428

Physical Location & Seq

Genomic Coordinates Reverse (-)

60470490 .. 60471974

Gene Structure 1485 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1485 bp

ATGAAACGAGGGTACTCAGAATCGTCCTCCACCTCTCTCGAGCCACCTCAATCCAGGTTCAAATACAACCCAGAAAATGACCTCTTGGAAGATGAAAGCACAAACATTTTCGCACGTAAAGTGGCTGAACATTACAGTGATCAAACTCTGGAAGAAGGAGAAATTAGTCAAACCATGGAAGTGGCCGAGCATTACAGTGATCAAACTTTGGAAGAAGGAGAAATTAGTCCAACCATAGAAGCACAACCCCTAGAAACCCCTACTGTTCACATGAACGCAGTGAAGCAAAGCTTATTACAGACCGAGTCAACCTCGAAGGAACCGAGCCTTGATGAAGTGGAGGAGATCATACACTACAAATTCAGGAACAAGAAGTTACTAGAGGAAGCCTTTACGCATTCTTCTTTTACTTGCGGCTTTTCCTATGAGCGTTTGGAGTACGTAGGCGATGCGGTGCTTGGTTTATTGTTTTGCCGGGCACATTATTCTCTGTACCCGGATTTAGCTCCGGGAAAGTTGACCCGCCTCCGGGCGGCCAACGTCGATACCGAGAAGCTTGCACGTGTGGCACTCCAGCACGGCTTTCACCGCTACCTCCGCCACAGGAAACCTTACCTTGTAGATCAAATTCAAGAGTTTTCACGAGCGGTTATTGAGTATCCATTGCACTCAAATGGTCTTATTGACGCTCCGAAAGACCTTGCAGATGTTGTAGAGTCCACTATTGGGGCGGTTTTCATGGACTGCAACTCCATAGAGGTTGTGTGGCATGTGTTTAAGGGCTTGCTAGAGCCGATCATAACTCAGGAGACGATACAAATACATCCAAACACACAGCTTCTTGAGATGTGTCAAAAGAACCGCTGGAGTCTCAAGTATGTAGATTCATGGGAGAAGGACTGTAGTGTTGGGTGTGTCATTGATGGTCAGATTGTTGGAAGAGGTACCTATAGTCTTCGGAAGGACGTTGCGCTAAACCGAGCAGCAAAAGATGCATTGGACAATAGGTGGAAGTGGATGGAGAATAATGCTACTGCCATTGCTCAATGTGTGACGGAGGAGCCTTCGGAACCGGTGCTAGTGAAGAATATGAACATGGAGAATAGAGATGAAGACGCTATTAGCTCTGTGGAGCAGGCTGAGGAACCAAGTGTCGGTTCTTTGGTGCCCGTTACTTCAGGAAAGAAAGATATGCAGGAGGATCTAGACACTAATGACACTTCTGTTCGAGGTCCGAATGTTTTGAGTGAAGAGACTACTTCATATAATGAGACTAACGTTAATACTCGTCCTCGAGGTCAGATAGAAATGCATGCCATAAATTCTCTTCTGGGGAATGGGATTGGTGATGAGTTTATTGGACTCTCTAGAGGACAACGAAAGCGCCTCCGGAAAAGACAACGGAAGATTTTGGCTAACACAACAATAATAACTCCGGAGATAATACCACTTCATTCAAACAAACAGTTTCTTGAGATATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3 Ribonuclease_3 dsrm

Protein Analysis

495

Amino Acids

56.07

Weight (kDa)

5.13

Isoelectric Point (pI)

46.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	123 - 248	1.8e-13	Ribonuclease-III-like
Ribonuclease_3	PF00636	143 - 249	1.1e-20	Ribonuclease III domain
dsrm	PF00035	278 - 335	9.9e-06	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15417 AT4G15417
fragaria_vesca	FvH4_5g08550 FvH4_6g42650
malus_domestica	MD09G1111700.v1.1 MD17G1102000.v1.1
prunus_persica	Prupe.3G213200_v2.0.a1
pyrus_communis	pycom09g03630 pycom17g09640
rosa_chinensis	RchiOBHm_Chr2g0158531 RchiOBHm_Chr7g0189841
rosa_laevigata	RLG00000004582 RLG00000021094
rosa_multiflora	Rmu_co8278635.1_g000001 Rmu_sc0000512.1_g000018 Rmu_sc0005896.1_g000003 Rmu_sc0005896.1_g000004 Rmu_sc0017496.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091270 Rroxscaffold_3G00265090
rosa_rugosa	Rorug02G0469800 Rorug06G0500300
rosa_samantha	Rh2AG535800 Rh2BG549000 Rh2CG519500 Rh2DG558700 Rh7AG105600 Rh7BG108400 Rh7CG110400 Rh7DG108700
rosa_wichuraiana	Rw2G044370 Rw7G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1293
Acc65I	GGTACC	1 cut(s)	944
AccB1I	GGYRCC	2 cut(s)	944, 1165
AccBSI	CCGCTC	1 cut(s)	647
AccIII	TCCGGA	2 cut(s)	1389, 1435
AciI	CCGC	9 cut(s)	414, 452, 523, 533, 589, 598, 647, 731, 862
AclI	AACGTT	1 cut(s)	1278
AclWI	GGATC	1 cut(s)	1209
AcoI	YGGCCR	2 cut(s)	183, 534
AcsI	RAATTY	3 cut(s)	359, 627, 1321
AcuI	CTGAAG	1 cut(s)	1161
AcvI	CACGTG	1 cut(s)	563
AfaI	GTAC	4 cut(s)	14, 440, 494, 946
AfiI	CCNNNNNNNGG	5 cut(s)	528, 529, 532, 726, 1154
AflIII	ACRYGT	1 cut(s)	562
AgeI	ACCGGT	1 cut(s)	1072
AgsI	TTSAA	3 cut(s)	61, 632, 1458
AjnI	CCWGG	1 cut(s)	53
AjuI	GAANNNNNNNTTGG	2 cut(s)	1141, 1173
AluBI	AGCT	5 cut(s)	291, 506, 556, 838, 1125
AluI	AGCT	5 cut(s)	291, 506, 556, 838, 1125
Alw26I	GTCTC	4 cut(s)	803, 875, 1247, 1265
AlwI	GGATC	1 cut(s)	1209
Ama87I	CYCGRG	2 cut(s)	38, 1293
Aor13HI	TCCGGA	2 cut(s)	1389, 1435
AoxI	GGCC	2 cut(s)	183, 534
ApeKI	GCWGC	1 cut(s)	983
ApoI	RAATTY	3 cut(s)	359, 627, 1321
AsiGI	ACCGGT	1 cut(s)	1072
Asp718I	GGTACC	1 cut(s)	944
AspLEI	GCGC	2 cut(s)	973, 1386
AspS9I	GGNCC	1 cut(s)	1232
AsuC2I	CCSGG	4 cut(s)	476, 497, 510, 530
AsuHPI	GGTGA	2 cut(s)	578, 1358
AvaI	CYCGRG	2 cut(s)	38, 1293
AvaII	GGWCC	1 cut(s)	1232
BaeGI	GKGCMC	2 cut(s)	481, 1170
BanI	GGYRCC	2 cut(s)	944, 1165
BauI	CACGAG	1 cut(s)	642
BbrPI	CACGTG	1 cut(s)	563
BbsI	GAAGAC	2 cut(s)	947, 1119
BbvCI	CCTCAGC	1 cut(s)	1140
BbvI	GCAGC	1 cut(s)	995
BccI	CCATC	2 cut(s)	917, 1012
BceAI	ACGGC	1 cut(s)	595
BcgI	CGANNNNNNTGC	2 cut(s)	539, 573
BciT130I	CCWGG	1 cut(s)	55
BciVI	GTATCC	1 cut(s)	669
BclI	TGATCA	2 cut(s)	139, 199
BcnI	CCSGG	4 cut(s)	476, 497, 510, 530
BcoDI	GTCTC	4 cut(s)	803, 875, 1247, 1265
BfaI	CTAG	6 cut(s)	251, 380, 788, 1079, 1205, 1368
BfmI	CTRYAG	2 cut(s)	901, 949
BfoI	RGCGCY	1 cut(s)	1387
BfuI	GTATCC	1 cut(s)	669
BisI	GCNGC	3 cut(s)	415, 534, 984
BlsI	GCNGC	3 cut(s)	416, 535, 985
Bme1390I	CCNGG	5 cut(s)	55, 476, 497, 510, 530
Bme18I	GGWCC	1 cut(s)	1232
BmeT110I	CYCGRG	2 cut(s)	38, 1293
BmgT120I	GGNCC	1 cut(s)	1232
BmiI	GGNNCC	6 cut(s)	321, 946, 1062, 1071, 1146, 1167
BmrFI	CCNGG	5 cut(s)	55, 476, 497, 510, 530
BmsI	GCATC	2 cut(s)	439, 982
BpiI	GAAGAC	2 cut(s)	947, 1119
BplI	GAGNNNNNCTC	2 cut(s)	296, 328
BpmI	CTGGAG	2 cut(s)	557, 886
Bpu10I	CCTNAGC	1 cut(s)	1140
BpuEI	CTTGAG	2 cut(s)	857, 863
BpuMI	CCSGG	4 cut(s)	476, 497, 510, 530
BsaAI	YACGTR	3 cut(s)	116, 442, 563
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	3 cut(s)	1072, 1389, 1435
BsaXI	ACNNNNNCTCC	2 cut(s)	734, 764
Bsc4I	CCNNNNNNNGG	5 cut(s)	528, 529, 532, 726, 1154
Bse118I	RCCGGY	1 cut(s)	1072
Bse3DI	GCAATG	2 cut(s)	662, 1038
BseAI	TCCGGA	2 cut(s)	1389, 1435
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	823, 1023
BseLI	CCNNNNNNNGG	5 cut(s)	528, 529, 532, 726, 1154
BseMI	GCAATG	2 cut(s)	662, 1038
BseMII	CTCAG	3 cut(s)	30, 818, 1131
BseRI	GAGGAG	2 cut(s)	356, 1073
BseSI	GKGCMC	2 cut(s)	481, 1170
BseXI	GCAGC	1 cut(s)	995
BshFI	GGCC	2 cut(s)	185, 536
BshNI	GGYRCC	2 cut(s)	944, 1165
BshTI	ACCGGT	1 cut(s)	1072
BsiHKCI	CYCGRG	2 cut(s)	38, 1293
BsiSI	CCGG	7 cut(s)	475, 497, 509, 529, 1073, 1390, 1436
BslI	CCNNNNNNNGG	5 cut(s)	528, 529, 532, 726, 1154
BsmAI	GTCTC	4 cut(s)	803, 875, 1247, 1265
BsmBI	CGTCTC	1 cut(s)	803
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	185, 536
BsoBI	CYCGRG	2 cut(s)	38, 1293
Bsp1286I	GDGCHC	2 cut(s)	481, 1170
Bsp13I	TCCGGA	2 cut(s)	1389, 1435
Bsp143I	GATC	6 cut(s)	139, 199, 345, 622, 795, 1201
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	9 cut(s)	414, 452, 523, 533, 589, 598, 647, 731, 862
BspANI	GGCC	2 cut(s)	185, 536
BspCNI	CTCAG	3 cut(s)	29, 817, 1132
BspEI	TCCGGA	2 cut(s)	1389, 1435
BspLI	GGNNCC	6 cut(s)	321, 946, 1062, 1071, 1146, 1167
BspPI	GGATC	1 cut(s)	1209
BspT107I	GGYRCC	2 cut(s)	944, 1165
BsrBI	CCGCTC	1 cut(s)	647
BsrDI	GCAATG	2 cut(s)	662, 1038
BsrFI	RCCGGY	1 cut(s)	1072
BssAI	RCCGGY	1 cut(s)	1072
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	6 cut(s)	139, 199, 345, 622, 795, 1201
BssSI	CACGAG	1 cut(s)	642
BssT1I	CCWWGG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	642
Bst2UI	CCWGG	1 cut(s)	55
Bst4CI	ACNGT	5 cut(s)	137, 197, 265, 902, 1467
Bst6I	CTCTTC	3 cut(s)	934, 1245, 1332
BstAPI	GCANNNNNTGC	1 cut(s)	992
BstBAI	YACGTR	3 cut(s)	116, 442, 563
BstC8I	GCNNGC	4 cut(s)	558, 785, 1137, 1314
BstDEI	CTNAG	3 cut(s)	16, 804, 1140
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	2 cut(s)	823, 1023
BstH2I	RGCGCY	1 cut(s)	1387
BstHHI	GCGC	2 cut(s)	973, 1386
BstKTI	GATC	6 cut(s)	142, 202, 348, 625, 798, 1204
BstMAI	GTCTC	4 cut(s)	803, 875, 1247, 1265
BstMBI	GATC	6 cut(s)	139, 199, 345, 622, 795, 1201
BstMWI	GCNNNNNNNGC	4 cut(s)	566, 588, 597, 992
BstNI	CCWGG	1 cut(s)	55
BstNSI	RCATGY	2 cut(s)	773, 1316
BstSCI	CCNGG	5 cut(s)	53, 474, 495, 508, 528
BstSFI	CTRYAG	2 cut(s)	901, 949
BstSLI	GKGCMC	2 cut(s)	481, 1170
BstSNI	TACGTA	1 cut(s)	442
BstV1I	GCAGC	1 cut(s)	995
BstV2I	GAAGAC	2 cut(s)	947, 1119
BstX2I	RGATCY	1 cut(s)	1201
BstXI	CCANNNNNNTGG	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	1201
BsuI	GTATCC	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	185, 536
BtgI	CCRYGG	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	462
BtsCI	GGATG	2 cut(s)	823, 1023
BtsI	GCAGTG	1 cut(s)	285
BtsIMutI	CAGTG	3 cut(s)	142, 202, 285
Cac8I	GCNNGC	4 cut(s)	558, 785, 1137, 1314
CfoI	GCGC	2 cut(s)	973, 1386
Cfr10I	RCCGGY	1 cut(s)	1072
Cfr13I	GGNCC	1 cut(s)	1232
CseI	GACGC	2 cut(s)	695, 1124
Csp6I	GTAC	4 cut(s)	13, 439, 493, 945
CspAI	ACCGGT	1 cut(s)	1072
CviAII	CATG	7 cut(s)	175, 271, 739, 770, 888, 1096, 1313
CviQI	GTAC	4 cut(s)	13, 439, 493, 945
DdeI	CTNAG	3 cut(s)	16, 804, 1140
DpnI	GATC	6 cut(s)	141, 201, 347, 624, 797, 1203
DpnII	GATC	6 cut(s)	139, 199, 345, 622, 795, 1201
EaeI	YGGCCR	2 cut(s)	183, 534
Eam1104I	CTCTTC	3 cut(s)	934, 1245, 1332
EarI	CTCTTC	3 cut(s)	934, 1245, 1332
EciI	GGCGGA	1 cut(s)	587
Eco105I	TACGTA	1 cut(s)	442
Eco130I	CCWWGG	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	1232
Eco57I	CTGAAG	1 cut(s)	1161
Eco72I	CACGTG	1 cut(s)	563
Eco88I	CYCGRG	2 cut(s)	38, 1293
EcoRII	CCWGG	1 cut(s)	53
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	2 cut(s)	997, 1314
ErhI	CCWWGG	1 cut(s)	174
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	7 cut(s)	178, 274, 742, 773, 891, 1099, 1316
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FatI	CATG	7 cut(s)	174, 270, 738, 769, 887, 1095, 1312
FauI	CCCGC	1 cut(s)	530
FbaI	TGATCA	2 cut(s)	139, 199
Fnu4HI	GCNGC	3 cut(s)	415, 534, 984
FokI	GGATG	2 cut(s)	810, 1030
Fsp4HI	GCNGC	3 cut(s)	415, 534, 984
FspBI	CTAG	6 cut(s)	251, 380, 788, 1079, 1205, 1368
GlaI	GCGC	2 cut(s)	972, 1385
GluI	GCNGC	3 cut(s)	415, 534, 984
GsuI	CTGGAG	2 cut(s)	557, 886
HaeII	RGCGCY	1 cut(s)	1387
HaeIII	GGCC	2 cut(s)	185, 536
HapII	CCGG	7 cut(s)	475, 497, 509, 529, 1073, 1390, 1436
HgaI	GACGC	2 cut(s)	695, 1124
HhaI	GCGC	2 cut(s)	973, 1386
Hin1II	CATG	7 cut(s)	178, 274, 742, 773, 891, 1099, 1316
Hin6I	GCGC	2 cut(s)	971, 1384
HinP1I	GCGC	2 cut(s)	971, 1384
HincII	GTYRAC	2 cut(s)	309, 519
HindII	GTYRAC	2 cut(s)	309, 519
HindIII	AAGCTT	2 cut(s)	289, 554
HinfI	GANTC	6 cut(s)	20, 305, 716, 868, 884, 1362
HpaII	CCGG	7 cut(s)	475, 497, 509, 529, 1073, 1390, 1436
HphI	GGTGA	2 cut(s)	578, 1358
Hpy166II	GTNNAC	4 cut(s)	268, 309, 519, 720
Hpy188I	TCNGA	7 cut(s)	19, 693, 930, 960, 1069, 1236, 1302
Hpy8I	GTNNAC	4 cut(s)	268, 309, 519, 720
Hpy99I	CGWCG	1 cut(s)	545
HpyAV	CCTTC	6 cut(s)	149, 209, 310, 889, 955, 1074
HpyCH4III	ACNGT	5 cut(s)	137, 197, 265, 902, 1467
HpyCH4IV	ACGT	6 cut(s)	115, 441, 540, 562, 966, 1278
HpyCH4V	TGCA	7 cut(s)	560, 667, 704, 747, 995, 1195, 1312
HpyF10VI	GCNNNNNNNGC	4 cut(s)	566, 588, 597, 992
HpyF3I	CTNAG	3 cut(s)	16, 804, 1140
HpySE526I	ACGT	6 cut(s)	115, 441, 540, 562, 966, 1278
Hsp92II	CATG	7 cut(s)	178, 274, 742, 773, 891, 1099, 1316
HspAI	GCGC	2 cut(s)	971, 1384
Kpn2I	TCCGGA	2 cut(s)	1389, 1435
KpnI	GGTACC	1 cut(s)	948
Ksp22I	TGATCA	2 cut(s)	139, 199
Kzo9I	GATC	6 cut(s)	139, 199, 345, 622, 795, 1201
LmnI	GCTCC	4 cut(s)	511, 694, 1060, 1132
Lsp1109I	GCAGC	1 cut(s)	995
LweI	GCATC	2 cut(s)	439, 982
MaeI	CTAG	6 cut(s)	251, 380, 788, 1079, 1205, 1368
MaeII	ACGT	6 cut(s)	115, 441, 540, 562, 966, 1278
MaeIII	GTNAC	3 cut(s)	375, 1051, 1171
MalI	GATC	6 cut(s)	141, 201, 347, 624, 797, 1203
MbiI	CCGCTC	1 cut(s)	647
MboI	GATC	6 cut(s)	139, 199, 345, 622, 795, 1201
MflI	RGATCY	1 cut(s)	1201
MhlI	GDGCHC	2 cut(s)	481, 1170
MluCI	AATT	5 cut(s)	162, 222, 359, 627, 1321
MlyI	GAGTC	4 cut(s)	314, 725, 877, 1356
MmeI	TCCRAC	2 cut(s)	254, 916
Mph1103I	ATGCAT	2 cut(s)	997, 1314
MroI	TCCGGA	2 cut(s)	1389, 1435
MseI	TTAA	3 cut(s)	777, 1281, 1483
MslI	CAYNNNNRTG	4 cut(s)	135, 179, 195, 672
MspA1I	CMGCKG	1 cut(s)	864
MspI	CCGG	7 cut(s)	475, 497, 509, 529, 1073, 1390, 1436
MspR9I	CCNGG	5 cut(s)	55, 476, 497, 510, 530
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	4 cut(s)	566, 588, 597, 992
NciI	CCSGG	4 cut(s)	476, 497, 510, 530
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	6 cut(s)	139, 199, 345, 622, 795, 1201
NlaIII	CATG	7 cut(s)	178, 274, 742, 773, 891, 1099, 1316
NlaIV	GGNNCC	6 cut(s)	321, 946, 1062, 1071, 1146, 1167
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	1051
NsiI	ATGCAT	2 cut(s)	997, 1314
NspI	RCATGY	2 cut(s)	773, 1316
PaeI	GCATGC	1 cut(s)	1316
PaeR7I	CTCGAG	2 cut(s)	38, 1293
PcsI	WCGNNNNNNNCGW	2 cut(s)	320, 546
PctI	GAATGC	1 cut(s)	397
PfeI	GAWTC	2 cut(s)	20, 884
PflFI	GACNNNGTC	1 cut(s)	304
PfoI	TCCNGGA	1 cut(s)	508
PinAI	ACCGGT	1 cut(s)	1072
PkrI	GCNGC	3 cut(s)	416, 535, 985
PleI	GAGTC	4 cut(s)	313, 724, 876, 1356
PmaCI	CACGTG	1 cut(s)	563
PmlI	CACGTG	1 cut(s)	563
PpsI	GAGTC	4 cut(s)	313, 724, 876, 1356
Ppu21I	YACGTR	3 cut(s)	116, 442, 563
Psp1406I	AACGTT	1 cut(s)	1278
Psp6I	CCWGG	1 cut(s)	53
PspCI	CACGTG	1 cut(s)	563
PspGI	CCWGG	1 cut(s)	53
PspN4I	GGNNCC	6 cut(s)	321, 946, 1062, 1071, 1146, 1167
PspPI	GGNCC	1 cut(s)	1232
PspXI	VCTCGAGB	1 cut(s)	1293
PsuI	RGATCY	1 cut(s)	1201
PsyI	GACNNNGTC	1 cut(s)	304
RsaI	GTAC	4 cut(s)	14, 440, 494, 946
RsaNI	GTAC	4 cut(s)	13, 439, 493, 945
RseI	CAYNNNNRTG	4 cut(s)	135, 179, 195, 672
SaqAI	TTAA	3 cut(s)	777, 1281, 1483
SatI	GCNGC	3 cut(s)	415, 534, 984
Sau3AI	GATC	6 cut(s)	139, 199, 345, 622, 795, 1201
Sau96I	GGNCC	1 cut(s)	1232
SchI	GAGTC	4 cut(s)	314, 725, 877, 1356
ScrFI	CCNGG	5 cut(s)	55, 476, 497, 510, 530
SduI	GDGCHC	2 cut(s)	481, 1170
SfaNI	GCATC	2 cut(s)	439, 982
SfcI	CTRYAG	2 cut(s)	901, 949
Sfr274I	CTCGAG	2 cut(s)	38, 1293
SinI	GGWCC	1 cut(s)	1232
SlaI	CTCGAG	2 cut(s)	38, 1293
SmiMI	CAYNNNNRTG	4 cut(s)	135, 179, 195, 672
SmlI	CTYRAG	5 cut(s)	38, 842, 872, 1293, 1472
SmoI	CTYRAG	5 cut(s)	38, 842, 872, 1293, 1472
SnaBI	TACGTA	1 cut(s)	442
SphI	GCATGC	1 cut(s)	1316
Sse9I	AATT	5 cut(s)	162, 222, 359, 627, 1321
SsiI	CCGC	9 cut(s)	414, 452, 523, 533, 589, 598, 647, 731, 862
SspMI	CTAG	6 cut(s)	251, 380, 788, 1079, 1205, 1368
StyD4I	CCNGG	5 cut(s)	53, 474, 495, 508, 528
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	5 cut(s)	137, 197, 265, 902, 1467
TaiI	ACGT	6 cut(s)	118, 444, 543, 565, 969, 1281
TaqI	TCGA	5 cut(s)	39, 314, 543, 1228, 1294
TaqII	GACCGA	1 cut(s)	317
TasI	AATT	5 cut(s)	162, 222, 359, 627, 1321
TauI	GCSGC	2 cut(s)	417, 536
TfiI	GAWTC	2 cut(s)	20, 884
Tru1I	TTAA	3 cut(s)	777, 1281, 1483
Tru9I	TTAA	3 cut(s)	777, 1281, 1483
TscAI	CASTG	3 cut(s)	142, 202, 285
TseFI	GTSAC	1 cut(s)	1051
TseI	GCWGC	1 cut(s)	983
Tsp45I	GTSAC	1 cut(s)	1051
TspGWI	ACGGA	2 cut(s)	1070, 1417
TspRI	CASTG	3 cut(s)	142, 202, 285
Tth111I	GACNNNGTC	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	1232
XapI	RAATTY	3 cut(s)	359, 627, 1321
XbaI	TCTAGA	2 cut(s)	1204, 1367
XceI	RCATGY	2 cut(s)	773, 1316
XhoI	CTCGAG	2 cut(s)	38, 1293
XspI	CTAG	6 cut(s)	251, 380, 788, 1079, 1205, 1368
Zsp2I	ATGCAT	2 cut(s)	997, 1314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.