Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017496.1

Orthogroup ID

OG0004428

Physical Location & Seq

Genomic Coordinates Reverse (-)

15744 .. 17070

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017496.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 602 bp

tgacccgcctcagggccgccaatgttgacaccgagaagctggcacgtgtggccctccgacacgggttccaccgctacctacgccacaagaaacgtttgcttgaagatcaaatccaagagtttgctcgagcagttctcgattatccattgcactccaatggtcttattgatgctccaaaagatcttgcagatcttgtggaatccacaatcggggcagttttcatggactgcaactcgatagacatagtctgggaggtattcaagggcttgctggagccgataataactccagaaacaatacaaatacatttcaacacccagctgaatgagttatgtcaaaagaacaatcggagtctcaaatatgtagactcatgggagaaaaacaaagctgtggattgtttaattgatggtcaatttgttggaaggggtacctacagtcttcggaaggaagttgcacagaaccgagcagcaaaagatgctttggacaacaggtggaagtggatggtgttacgcgagaaagacgctgctgatgaagagcaagaagaagagagtcctaccagtcaattatccgaggaagaattcgaagttaatgaacaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3 Ribonuclease_3 dsrm

Protein Analysis

199

Amino Acids

23.01

Weight (kDa)

5.15

Isoelectric Point (pI)

41.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15417 AT4G15417
fragaria_vesca	FvH4_5g08550 FvH4_6g42650
malus_domestica	MD09G1111700.v1.1 MD17G1102000.v1.1
prunus_persica	Prupe.3G213200_v2.0.a1
pyrus_communis	pycom09g03630 pycom17g09640
rosa_chinensis	RchiOBHm_Chr2g0158531 RchiOBHm_Chr7g0189841
rosa_laevigata	RLG00000004582 RLG00000021094
rosa_multiflora	Rmu_co8278635.1_g000001 Rmu_sc0000512.1_g000018 Rmu_sc0005896.1_g000003 Rmu_sc0005896.1_g000004 Rmu_sc0017496.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091270 Rroxscaffold_3G00265090
rosa_rugosa	Rorug02G0469800 Rorug06G0500300
rosa_samantha	Rh2AG535800 Rh2BG549000 Rh2CG519500 Rh2DG558700 Rh7AG105600 Rh7BG108400 Rh7CG110400 Rh7DG108700
rosa_wichuraiana	Rw2G044370 Rw7G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	427
AccI	GTMKAC	1 cut(s)	365
AccII	CGCG	1 cut(s)	512
AciI	CCGC	3 cut(s)	6, 17, 72
AclI	AACGTT	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	577
AcvI	CACGTG	1 cut(s)	46
AfaI	GTAC	1 cut(s)	429
AfiI	CCNNNNNNNGG	3 cut(s)	11, 12, 209
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	3 cut(s)	103, 261, 312
AluBI	AGCT	4 cut(s)	39, 321, 388, 598
AluI	AGCT	4 cut(s)	39, 321, 388, 598
Alw26I	GTCTC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	14, 50
ApeKI	GCWGC	2 cut(s)	466, 523
ApoI	RAATTY	1 cut(s)	577
Asp718I	GGTACC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	14, 51
AsuII	TTCGAA	1 cut(s)	581
AvaI	CYCGRG	1 cut(s)	125
AxyI	CCTNAGG	1 cut(s)	10
BanI	GGYRCC	1 cut(s)	427
BbrPI	CACGTG	1 cut(s)	46
BbsI	GAAGAC	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	478, 510
BccI	CCATC	2 cut(s)	400, 495
BcoDI	GTCTC	1 cut(s)	358
BfmI	CTRYAG	1 cut(s)	432
BglII	AGATCT	2 cut(s)	180, 189
BisI	GCNGC	3 cut(s)	17, 467, 524
BlsI	GCNGC	3 cut(s)	18, 468, 525
BmeT110I	CYCGRG	1 cut(s)	125
BmgT120I	GGNCC	2 cut(s)	14, 51
BmiI	GGNNCC	3 cut(s)	67, 275, 429
BmsI	GCATC	2 cut(s)	159, 465
BpiI	GAAGAC	1 cut(s)	430
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	2 cut(s)	272, 292
Bpu14I	TTCGAA	1 cut(s)	581
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	3 cut(s)	11, 12, 209
Bse1I	ACTGG	1 cut(s)	557
Bse21I	CCTNAGG	1 cut(s)	10
Bse3DI	GCAATG	1 cut(s)	145
BseDI	CCNNGG	1 cut(s)	569
BseGI	GGATG	1 cut(s)	506
BseLI	CCNNNNNNNGG	3 cut(s)	11, 12, 209
BseMI	GCAATG	1 cut(s)	145
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	557
BseXI	GCAGC	2 cut(s)	478, 510
BseYI	CCCAGC	1 cut(s)	317
Bsh1236I	CGCG	1 cut(s)	512
BshFI	GGCC	2 cut(s)	16, 52
BshNI	GGYRCC	1 cut(s)	427
BsiHKCI	CYCGRG	1 cut(s)	125
BslI	CCNNNNNNNGG	3 cut(s)	11, 12, 209
BsmAI	GTCTC	1 cut(s)	358
BsnI	GGCC	2 cut(s)	16, 52
BsoBI	CYCGRG	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	581
Bsp143I	GATC	3 cut(s)	105, 180, 189
BspACI	CCGC	3 cut(s)	6, 17, 72
BspANI	GGCC	2 cut(s)	16, 52
BspCNI	CTCAG	1 cut(s)	23
BspFNI	CGCG	1 cut(s)	512
BspLI	GGNNCC	3 cut(s)	67, 275, 429
BspQI	GCTCTTC	1 cut(s)	527
BspT104I	TTCGAA	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	427
BsrDI	GCAATG	1 cut(s)	145
BsrI	ACTGG	1 cut(s)	557
BssECI	CCNNGG	1 cut(s)	569
BssMI	GATC	3 cut(s)	105, 180, 189
Bst4CI	ACNGT	1 cut(s)	436
Bst6I	CTCTTC	2 cut(s)	527, 539
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstBAI	YACGTR	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	581
BstC8I	GCNNGC	2 cut(s)	41, 268
BstDEI	CTNAG	1 cut(s)	10
BstF5I	GGATG	1 cut(s)	506
BstFNI	CGCG	1 cut(s)	512
BstKTI	GATC	3 cut(s)	108, 183, 192
BstMAI	GTCTC	1 cut(s)	358
BstMBI	GATC	3 cut(s)	105, 180, 189
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 80, 475
BstSFI	CTRYAG	1 cut(s)	432
BstUI	CGCG	1 cut(s)	512
BstV1I	GCAGC	2 cut(s)	478, 510
BstV2I	GAAGAC	1 cut(s)	430
BstX2I	RGATCY	2 cut(s)	180, 189
BstYI	RGATCY	2 cut(s)	180, 189
Bsu36I	CCTNAGG	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	16, 52
BtsCI	GGATG	1 cut(s)	506
Cac8I	GCNNGC	2 cut(s)	41, 268
Cfr13I	GGNCC	2 cut(s)	14, 51
CseI	GACGC	1 cut(s)	529
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	2 cut(s)	222, 371
CviJI	RGCY	8 cut(s)	16, 39, 52, 266, 276, 321, 388, 598
CviKI_1	RGCY	8 cut(s)	16, 39, 52, 266, 276, 321, 388, 598
CviQI	GTAC	1 cut(s)	428
DdeI	CTNAG	1 cut(s)	10
DpnI	GATC	3 cut(s)	107, 182, 191
DpnII	GATC	3 cut(s)	105, 180, 189
Eam1104I	CTCTTC	2 cut(s)	527, 539
EarI	CTCTTC	2 cut(s)	527, 539
Eco72I	CACGTG	1 cut(s)	46
Eco81I	CCTNAGG	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	577
FaeI	CATG	2 cut(s)	225, 374
FaiI	YATR	5 cut(s)	223, 244, 333, 362, 372
FatI	CATG	2 cut(s)	221, 370
FauI	CCCGC	1 cut(s)	13
FblI	GTMKAC	1 cut(s)	365
Fnu4HI	GCNGC	3 cut(s)	17, 467, 524
FokI	GGATG	1 cut(s)	513
Fsp4HI	GCNGC	3 cut(s)	17, 467, 524
GluI	GCNGC	3 cut(s)	17, 467, 524
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	2 cut(s)	272, 292
HaeIII	GGCC	2 cut(s)	16, 52
HgaI	GACGC	1 cut(s)	529
Hin1II	CATG	2 cut(s)	225, 374
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	4 cut(s)	199, 351, 367, 549
Hpy166II	GTNNAC	2 cut(s)	27, 366
Hpy188I	TCNGA	4 cut(s)	58, 350, 443, 570
Hpy188III	TCNNGA	2 cut(s)	136, 289
Hpy8I	GTNNAC	2 cut(s)	27, 366
HpyAV	CCTTC	2 cut(s)	416, 438
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4IV	ACGT	2 cut(s)	45, 93
HpyCH4V	TGCA	4 cut(s)	150, 187, 230, 454
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 80, 475
HpyF3I	CTNAG	1 cut(s)	10
HpySE526I	ACGT	2 cut(s)	45, 93
Hsp92II	CATG	2 cut(s)	225, 374
KpnI	GGTACC	1 cut(s)	431
Kzo9I	GATC	3 cut(s)	105, 180, 189
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	2 cut(s)	177, 273
LpnPI	CCDG	7 cut(s)	25, 234, 256, 302, 331, 474, 570
Lsp1109I	GCAGC	2 cut(s)	478, 510
LweI	GCATC	2 cut(s)	159, 465
MaeII	ACGT	2 cut(s)	45, 93
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	3 cut(s)	107, 182, 191
MboI	GATC	3 cut(s)	105, 180, 189
MboII	GAAGA	6 cut(s)	115, 430, 544, 553, 556, 586
MflI	RGATCY	2 cut(s)	180, 189
MluCI	AATT	4 cut(s)	401, 412, 562, 577
MlyI	GAGTC	3 cut(s)	360, 361, 558
MmeI	TCCRAC	2 cut(s)	81, 399
MnlI	CCTC	4 cut(s)	19, 64, 246, 564
MseI	TTAA	2 cut(s)	400, 587
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	512
MwoI	GCNNNNNNNGC	3 cut(s)	49, 80, 475
NdeII	GATC	3 cut(s)	105, 180, 189
NlaIII	CATG	2 cut(s)	225, 374
NlaIV	GGNNCC	3 cut(s)	67, 275, 429
NspV	TTCGAA	1 cut(s)	581
PaeR7I	CTCGAG	1 cut(s)	125
PciSI	GCTCTTC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	199
PflFI	GACNNNGTC	1 cut(s)	244
PkrI	GCNGC	3 cut(s)	18, 468, 525
PleI	GAGTC	3 cut(s)	359, 361, 557
PmaCI	CACGTG	1 cut(s)	46
PmlI	CACGTG	1 cut(s)	46
PpsI	GAGTC	3 cut(s)	359, 361, 557
Ppu21I	YACGTR	1 cut(s)	46
Psp1406I	AACGTT	1 cut(s)	93
PspCI	CACGTG	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	317
PspN4I	GGNNCC	3 cut(s)	67, 275, 429
PspPI	GGNCC	2 cut(s)	14, 51
PspXI	VCTCGAGB	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	180, 189
PsyI	GACNNNGTC	1 cut(s)	244
PvuII	CAGCTG	1 cut(s)	321
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
RseI	CAYNNNNRTG	1 cut(s)	155
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	400, 587
SatI	GCNGC	3 cut(s)	17, 467, 524
Sau3AI	GATC	3 cut(s)	105, 180, 189
Sau96I	GGNCC	2 cut(s)	14, 51
SchI	GAGTC	3 cut(s)	360, 361, 558
SfaNI	GCATC	2 cut(s)	159, 465
SfcI	CTRYAG	1 cut(s)	432
Sfr274I	CTCGAG	1 cut(s)	125
SfuI	TTCGAA	1 cut(s)	581
SlaI	CTCGAG	1 cut(s)	125
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	4 cut(s)	401, 412, 562, 577
SsiI	CCGC	3 cut(s)	6, 17, 72
TaaI	ACNGT	1 cut(s)	436
TaiI	ACGT	2 cut(s)	48, 96
TaqI	TCGA	4 cut(s)	126, 137, 235, 581
TasI	AATT	4 cut(s)	401, 412, 562, 577
TauI	GCSGC	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	400, 587
Tru9I	TTAA	2 cut(s)	400, 587
TseI	GCWGC	2 cut(s)	466, 523
TspDTI	ATGAA	2 cut(s)	210, 545
Tth111I	GACNNNGTC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	577
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.