Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0004428

Physical Location & Seq

Genomic Coordinates Reverse (-)

2683543 .. 2685651

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGAGCAGTCCAAGCTGCAGAAGAAGAAACAATCACAACCCTACATCTGCACGACGTCAAACCAACCTTGCCATCTATTGATAGGTCAACATCATTGACAGATCACGAGCATCATCTAAATCTTGAAGAAGTGGAGGAGATTATAAGGTACAAATTCGAGAACAAGGTTTTGCTGCAGGAGGCTTTCACACATCCTTCCTTCGTCCCCGCCGAGTGCTCCGGTTCATCCTACGAGCGTCTGGAGTACGTCGGGGATGCGGTGCTAAATTTGCTGTTCAGCAGAGAACAGTACCTTTTGTACCCCGACTTGGCACCCGGGCCGTTGACGCGGCTCCGGGCAGCCAATGTTGATACGGAGAAGCTTGCGCGTGTGGCGATCCAGCATGGGTTGCACCGGTACCTGCGGCATAGGAAACCGTTGCTTGAAGAACAAATTCGAGAATTTGCACGAGCGATTCATGAGTATCCACTGCATTCCAATGGTCTCATTGATGCTCCAAAGAACCTTGCGGACATTGTTGAGTCCACAATAGGTGCAGTTTTCATGGACTGCAACTCAATTGACATTGTGTGGAAGGTGTTCAAGGATTTGTTGGAGCCTATAATAGATCCAAAGACGATAAAGAGGCATCCGGTGTCACAACTTCATGAAGTGTGTCAAAAGAACAATCTGAAACTCCGATTTGTCGATTTGTGGGAGGAGAAACACACGGTTGAGGTTTTTATAAACGATCAGATTGTTGGAAGAGGCACTTACAGTCTCAAGAAGGAAGTTGCACAGAATAGAGCAGCAAAAGATGCATTTGACAACATGTGGAATGTGATAGGTCAGAAGAAAGAGCATTTGACAACATGTGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3 Ribonuclease_3 dsrm

Protein Analysis

289

Amino Acids

33.06

Weight (kDa)

5.92

Isoelectric Point (pI)

29.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	55 - 184	3e-15	Ribonuclease-III-like
Ribonuclease_3	PF00636	79 - 185	5.2e-22	Ribonuclease III domain
dsrm	PF00035	212 - 271	2.1e-08	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004428)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G15417 AT4G15417
fragaria_vesca	FvH4_5g08550 FvH4_6g42650
malus_domestica	MD09G1111700.v1.1 MD17G1102000.v1.1
prunus_persica	Prupe.3G213200_v2.0.a1
pyrus_communis	pycom09g03630 pycom17g09640
rosa_chinensis	RchiOBHm_Chr2g0158531 RchiOBHm_Chr7g0189841
rosa_laevigata	RLG00000004582 RLG00000021094
rosa_multiflora	Rmu_co8278635.1_g000001 Rmu_sc0000512.1_g000018 Rmu_sc0005896.1_g000003 Rmu_sc0005896.1_g000004 Rmu_sc0017496.1_g000006
rosa_roxburghii	Rroxscaffold_2G00091270 Rroxscaffold_3G00265090
rosa_rugosa	Rorug02G0469800 Rorug06G0500300
rosa_samantha	Rh2AG535800 Rh2BG549000 Rh2CG519500 Rh2DG558700 Rh7AG105600 Rh7BG108400 Rh7CG110400 Rh7DG108700
rosa_wichuraiana	Rw2G044370 Rw7G009150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	146, 728
AatII	GACGTC	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	411
Acc65I	GGTACC	1 cut(s)	399
AccB1I	GGYRCC	2 cut(s)	313, 399
AccII	CGCG	2 cut(s)	331, 370
AciI	CCGC	5 cut(s)	210, 260, 331, 406, 512
AclWI	GGATC	2 cut(s)	373, 605
AcsI	RAATTY	4 cut(s)	155, 268, 435, 443
AcyI	GRCGYC	1 cut(s)	57
AfaI	GTAC	5 cut(s)	152, 248, 293, 302, 401
AfiI	CCNNNNNNNGG	1 cut(s)	310
AflIII	ACRYGT	2 cut(s)	813, 854
AgeI	ACCGGT	1 cut(s)	396
AgsI	TTSAA	3 cut(s)	128, 428, 586
AluBI	AGCT	2 cut(s)	17, 364
AluI	AGCT	2 cut(s)	17, 364
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	2 cut(s)	491, 767
AlwI	GGATC	2 cut(s)	373, 605
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	320
ApeKI	GCWGC	4 cut(s)	17, 175, 341, 791
ApoI	RAATTY	4 cut(s)	155, 268, 435, 443
AsiGI	ACCGGT	1 cut(s)	396
Asp700I	GAANNNNTTC	2 cut(s)	435, 581
Asp718I	GGTACC	1 cut(s)	399
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	3 cut(s)	318, 319, 338
AvaI	CYCGRG	1 cut(s)	317
BanI	GGYRCC	2 cut(s)	313, 399
BauI	CACGAG	2 cut(s)	107, 450
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	4 cut(s)	4, 162, 353, 803
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	1 cut(s)	307
BciVI	GTATCC	1 cut(s)	477
BcnI	CCSGG	3 cut(s)	318, 319, 338
BcoDI	GTCTC	2 cut(s)	491, 767
BfmI	CTRYAG	2 cut(s)	18, 176
BfuAI	ACCTGC	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	477
BisI	GCNGC	6 cut(s)	18, 176, 332, 342, 407, 792
BlsI	GCNGC	6 cut(s)	19, 177, 333, 343, 408, 793
Bme1390I	CCNGG	3 cut(s)	318, 319, 338
BmeT110I	CYCGRG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	4 cut(s)	315, 335, 401, 600
BmrFI	CCNGG	3 cut(s)	318, 319, 338
BmsI	GCATC	5 cut(s)	121, 247, 484, 640, 790
BpmI	CTGGAG	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	749
BpuMI	CCSGG	3 cut(s)	318, 319, 338
BsaHI	GRCGYC	1 cut(s)	57
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	317
BsaWI	WCCGGW	3 cut(s)	221, 396, 634
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	317
BseGI	GGATG	4 cut(s)	193, 227, 262, 631
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseRI	GAGGAG	2 cut(s)	152, 716
BseXI	GCAGC	4 cut(s)	4, 162, 353, 803
BsgI	GTGCAG	2 cut(s)	35, 558
Bsh1236I	CGCG	2 cut(s)	331, 370
BshFI	GGCC	1 cut(s)	322
BshNI	GGYRCC	2 cut(s)	313, 399
BshTI	ACCGGT	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	5 cut(s)	222, 318, 337, 397, 635
BslFI	GGGAC	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	2 cut(s)	491, 767
BsmFI	GGGAC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	1 cut(s)	322
Bso31I	GGTCTC	1 cut(s)	491
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	4 cut(s)	103, 378, 610, 733
BspACI	CCGC	5 cut(s)	210, 260, 331, 406, 512
BspANI	GGCC	1 cut(s)	322
BspFNI	CGCG	2 cut(s)	331, 370
BspHI	TCATGA	2 cut(s)	460, 649
BspLI	GGNNCC	4 cut(s)	315, 335, 401, 600
BspMAI	CTGCAG	2 cut(s)	22, 180
BspMI	ACCTGC	1 cut(s)	411
BspPI	GGATC	2 cut(s)	373, 605
BspT107I	GGYRCC	2 cut(s)	313, 399
BspTNI	GGTCTC	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	396
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	1 cut(s)	317
BssMI	GATC	4 cut(s)	103, 378, 610, 733
BssNI	GRCGYC	1 cut(s)	57
BssSI	CACGAG	2 cut(s)	107, 450
Bst2BI	CACGAG	2 cut(s)	107, 450
Bst4CI	ACNGT	4 cut(s)	291, 420, 715, 761
Bst6I	CTCTTC	1 cut(s)	742
BstACI	GRCGYC	1 cut(s)	57
BstAPI	GCANNNNNTGC	2 cut(s)	391, 800
BstC8I	GCNNGC	1 cut(s)	366
BstF5I	GGATG	4 cut(s)	193, 227, 262, 631
BstFNI	CGCG	2 cut(s)	331, 370
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	4 cut(s)	106, 381, 613, 736
BstMAI	GTCTC	2 cut(s)	491, 767
BstMBI	GATC	4 cut(s)	103, 378, 610, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 271, 328, 374, 391, 800
BstNSI	RCATGY	2 cut(s)	817, 858
BstSCI	CCNGG	3 cut(s)	316, 317, 336
BstSFI	CTRYAG	2 cut(s)	18, 176
BstUI	CGCG	2 cut(s)	331, 370
BstV1I	GCAGC	4 cut(s)	4, 162, 353, 803
BstX2I	RGATCY	1 cut(s)	610
BstYI	RGATCY	1 cut(s)	610
BsuI	GTATCC	1 cut(s)	477
BsuRI	GGCC	1 cut(s)	322
BtsCI	GGATG	4 cut(s)	193, 227, 262, 631
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	470
BveI	ACCTGC	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	2 cut(s)	460, 649
CfoI	GCGC	1 cut(s)	370
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	1 cut(s)	320
Cfr9I	CCCGGG	1 cut(s)	317
CseI	GACGC	2 cut(s)	227, 337
Csp6I	GTAC	5 cut(s)	151, 247, 292, 301, 400
CspAI	ACCGGT	1 cut(s)	396
CviAII	CATG	6 cut(s)	386, 461, 547, 650, 814, 855
CviJI	RGCY	7 cut(s)	17, 185, 322, 334, 344, 364, 601
CviKI_1	RGCY	7 cut(s)	17, 185, 322, 334, 344, 364, 601
CviQI	GTAC	5 cut(s)	151, 247, 292, 301, 400
DpnI	GATC	4 cut(s)	105, 380, 612, 735
DpnII	GATC	4 cut(s)	103, 378, 610, 733
Eam1104I	CTCTTC	1 cut(s)	742
EarI	CTCTTC	1 cut(s)	742
Eco31I	GGTCTC	1 cut(s)	491
Eco88I	CYCGRG	1 cut(s)	317
EcoT22I	ATGCAT	1 cut(s)	805
FaeI	CATG	6 cut(s)	389, 464, 550, 653, 817, 858
FalI	AAGNNNNNCTT	2 cut(s)	739, 771
FaqI	GGGAC	1 cut(s)	191
FatI	CATG	6 cut(s)	385, 460, 546, 649, 813, 854
FauI	CCCGC	1 cut(s)	217
Fnu4HI	GCNGC	6 cut(s)	18, 176, 332, 342, 407, 792
FokI	GGATG	4 cut(s)	180, 214, 269, 618
Fsp4HI	GCNGC	6 cut(s)	18, 176, 332, 342, 407, 792
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	6 cut(s)	18, 176, 332, 342, 407, 792
GsuI	CTGGAG	1 cut(s)	263
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	5 cut(s)	222, 318, 337, 397, 635
HgaI	GACGC	2 cut(s)	227, 337
HhaI	GCGC	1 cut(s)	370
Hin1I	GRCGYC	1 cut(s)	57
Hin1II	CATG	6 cut(s)	389, 464, 550, 653, 817, 858
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	2 cut(s)	90, 327
HindII	GTYRAC	2 cut(s)	90, 327
HindIII	AAGCTT	1 cut(s)	362
HinfI	GANTC	2 cut(s)	457, 524
HpaII	CCGG	5 cut(s)	222, 318, 337, 397, 635
Hpy166II	GTNNAC	3 cut(s)	90, 327, 528
Hpy188I	TCNGA	4 cut(s)	675, 683, 738, 834
Hpy188III	TCNNGA	8 cut(s)	107, 125, 160, 242, 440, 461, 650, 766
Hpy8I	GTNNAC	3 cut(s)	90, 327, 528
Hpy99I	CGWCG	2 cut(s)	59, 254
HpyAV	CCTTC	4 cut(s)	207, 211, 571, 763
HpyCH4III	ACNGT	4 cut(s)	291, 420, 715, 761
HpyCH4IV	ACGT	2 cut(s)	57, 249
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 271, 328, 374, 391, 800
HpySE526I	ACGT	2 cut(s)	57, 249
Hsp92I	GRCGYC	1 cut(s)	57
Hsp92II	CATG	6 cut(s)	389, 464, 550, 653, 817, 858
HspAI	GCGC	1 cut(s)	368
KpnI	GGTACC	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	103, 378, 610, 733
LmnI	GCTCC	5 cut(s)	5, 224, 339, 502, 598
LpnPI	CCDG	9 cut(s)	164, 227, 235, 331, 350, 395, 410, 416, 648
Lsp1109I	GCAGC	4 cut(s)	4, 162, 353, 803
LweI	GCATC	5 cut(s)	121, 247, 484, 640, 790
MaeII	ACGT	2 cut(s)	57, 249
MaeIII	GTNAC	1 cut(s)	639
MalI	GATC	4 cut(s)	105, 380, 612, 735
MboI	GATC	4 cut(s)	103, 378, 610, 733
MboII	GAAGA	6 cut(s)	35, 38, 140, 440, 759, 847
MfeI	CAATTG	1 cut(s)	561
MflI	RGATCY	1 cut(s)	610
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	5 cut(s)	155, 268, 435, 443, 561
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	2 cut(s)	576, 724
MnlI	CCTC	6 cut(s)	130, 175, 621, 694, 712, 743
Mph1103I	ATGCAT	1 cut(s)	805
MroXI	GAANNNNTTC	2 cut(s)	435, 581
MslI	CAYNNNNRTG	1 cut(s)	480
MspI	CCGG	5 cut(s)	222, 318, 337, 397, 635
MspR9I	CCNGG	3 cut(s)	318, 319, 338
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	475
MvnI	CGCG	2 cut(s)	331, 370
MwoI	GCNNNNNNNGC	6 cut(s)	14, 271, 328, 374, 391, 800
NciI	CCSGG	3 cut(s)	318, 319, 338
NdeII	GATC	4 cut(s)	103, 378, 610, 733
NlaIII	CATG	6 cut(s)	389, 464, 550, 653, 817, 858
NlaIV	GGNNCC	4 cut(s)	315, 335, 401, 600
NmeAIII	GCCGAG	1 cut(s)	238
NmuCI	GTSAC	1 cut(s)	639
NsiI	ATGCAT	1 cut(s)	805
NspI	RCATGY	2 cut(s)	817, 858
PagI	TCATGA	2 cut(s)	460, 649
PciI	ACATGT	2 cut(s)	813, 854
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	475
PdmI	GAANNNNTTC	2 cut(s)	435, 581
PfeI	GAWTC	1 cut(s)	457
PinAI	ACCGGT	1 cut(s)	396
PkrI	GCNGC	6 cut(s)	19, 177, 333, 343, 408, 793
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PscI	ACATGT	2 cut(s)	813, 854
PsiI	TTATAA	2 cut(s)	146, 728
PspN4I	GGNNCC	4 cut(s)	315, 335, 401, 600
PspPI	GGNCC	1 cut(s)	320
PstI	CTGCAG	2 cut(s)	22, 180
PsuI	RGATCY	1 cut(s)	610
RsaI	GTAC	5 cut(s)	152, 248, 293, 302, 401
RsaNI	GTAC	5 cut(s)	151, 247, 292, 301, 400
RseI	CAYNNNNRTG	1 cut(s)	480
SatI	GCNGC	6 cut(s)	18, 176, 332, 342, 407, 792
Sau3AI	GATC	4 cut(s)	103, 378, 610, 733
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	1 cut(s)	533
ScrFI	CCNGG	3 cut(s)	318, 319, 338
SduI	GDGCHC	1 cut(s)	221
SfaNI	GCATC	5 cut(s)	121, 247, 484, 640, 790
SfcI	CTRYAG	2 cut(s)	18, 176
SmaI	CCCGGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	5 cut(s)	155, 268, 435, 443, 561
SsiI	CCGC	5 cut(s)	210, 260, 331, 406, 512
StyD4I	CCNGG	3 cut(s)	316, 317, 336
TaaI	ACNGT	4 cut(s)	291, 420, 715, 761
TaiI	ACGT	2 cut(s)	60, 252
TaqI	TCGA	3 cut(s)	159, 439, 690
TasI	AATT	5 cut(s)	155, 268, 435, 443, 561
TauI	GCSGC	2 cut(s)	334, 409
TfiI	GAWTC	1 cut(s)	457
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	1 cut(s)	639
TseI	GCWGC	4 cut(s)	17, 175, 341, 791
Tsp45I	GTSAC	1 cut(s)	639
TspDTI	ATGAA	5 cut(s)	216, 449, 535, 638, 666
TspGWI	ACGGA	1 cut(s)	371
TspMI	CCCGGG	1 cut(s)	317
TspRI	CASTG	1 cut(s)	477
XapI	RAATTY	4 cut(s)	155, 268, 435, 443
XceI	RCATGY	2 cut(s)	817, 858
XmaI	CCCGGG	1 cut(s)	317
XmnI	GAANNNNTTC	2 cut(s)	435, 581
ZraI	GACGTC	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.