Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011892

Physical Location & Seq

Genomic Coordinates Reverse (-)

18110255 .. 18113641

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g13030.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGCGGGTATGCTCCCACTCCCAATACACCTCTCCCTCTCTCTCTCTCTCTCTGCTCCTCTCCAATGGCAGCCATAGCTCGCGTCTCCAGGAGAGCCTTAACCTCCTTCTCCAGCTCAGCCCAGCCATCCGCCCTCCACCGCACCTTCTCTGCCGAAGCAGCAAAAGCCGCGGCAATAACACCCTCGCCGGATCGGGTCAAGTGGGACTACAGAGGCCAGAGAAGGATAATTCCACTCGGCCAGTGGCTCCCGAAGATCGCCGTCGACGCATACGTGGCACCCAACGTGGTCTTGGCGGGTCAGGTCACGGTCTGCGACGGAGCATCCGTTTGGCCAGGGTCGGTCCTCCGCGGCGATCTCAATAAGATCACCGTCGGATTCTGCTCCAATGTTCAGGAAAGATGTGTCCTCCACGCCGCTTGGTCTTCCCCCACAGGACTTCCAGCAGAGACATCCATTGAGAGGTTTGTGACTATTGGCGCATACAGTCTGTTGCGGTCCTGCACGATTGAGCCAGAATGCATTGTTGGACAGCATTCGATCCTAATGGAAGGTTCCTTGGTGGAGACCCACGCTATCCTTGGGGAAAAAGATAAGCTGGATCTGTACTTCCCCCGGGGAGGAGAATTCCAACTGGTGAACTTTGGGCTGGAAACCCGGCAAGGTTTGTCCGAACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009853 GO:0009987 GO:0010033 GO:0010228 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070469 GO:0097305 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

228

Amino Acids

24.4

Weight (kDa)

7.63

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48680 AT5G63510 AT5G63510
fragaria_vesca	FvH4_5g08540
malus_domestica	MD06G1140000.v1.1 MD14G1155400.v1.1
prunus_persica	Prupe.5G149300_v2.0.a1
pyrus_communis	pycom06g13030 pycom14g12910
rosa_chinensis	RchiOBHm_Chr7g0189861
rosa_laevigata	RLG00000004581
rosa_multiflora	Rmu_sc0000512.1_g000019
rosa_roxburghii	Rroxscaffold_3G00265080
rosa_rugosa	Rorug06G0500300
rosa_samantha	Rh7AG105700 Rh7BG108500 Rh7CG110500 Rh7DG108800
rosa_wichuraiana	Rw7G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccBSI	CCGCTC	1 cut(s)	6
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	3 cut(s)	84, 173, 354
AclWI	GGATC	3 cut(s)	201, 538, 612
AcoI	YGGCCR	2 cut(s)	241, 335
AcsI	RAATTY	1 cut(s)	629
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	2 cut(s)	465, 623
AjnI	CCWGG	2 cut(s)	89, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	3 cut(s)	80, 117, 601
AluI	AGCT	3 cut(s)	80, 117, 601
Alw26I	GTCTC	3 cut(s)	91, 446, 563
AlwI	GGATC	3 cut(s)	201, 538, 612
Ama87I	CYCGRG	1 cut(s)	618
AoxI	GGCC	3 cut(s)	217, 241, 335
ApeKI	GCWGC	2 cut(s)	71, 161
ApoI	RAATTY	1 cut(s)	629
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	2 cut(s)	346, 501
AsuC2I	CCSGG	3 cut(s)	619, 620, 661
AsuHPI	GGTGA	2 cut(s)	364, 652
AvaI	CYCGRG	1 cut(s)	618
AvaII	GGWCC	2 cut(s)	346, 501
BalI	TGGCCA	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	420
BbvI	GCAGC	2 cut(s)	83, 173
BccI	CCATC	1 cut(s)	136
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	2 cut(s)	91, 339
BcnI	CCSGG	3 cut(s)	619, 620, 661
BcoDI	GTCTC	3 cut(s)	91, 446, 563
BfmI	CTRYAG	1 cut(s)	211
BisI	GCNGC	6 cut(s)	72, 162, 171, 174, 355, 420
BlpI	GCTNAGC	1 cut(s)	118
BlsI	GCNGC	6 cut(s)	73, 163, 172, 175, 356, 421
Bme1390I	CCNGG	5 cut(s)	91, 339, 619, 620, 661
Bme18I	GGWCC	2 cut(s)	346, 501
BmeT110I	CYCGRG	1 cut(s)	618
BmgT120I	GGNCC	2 cut(s)	346, 501
BmiI	GGNNCC	3 cut(s)	251, 282, 559
BmrFI	CCNGG	5 cut(s)	91, 339, 619, 620, 661
BmsI	GCATC	1 cut(s)	335
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	2 cut(s)	73, 97
Bpu1102I	GCTNAGC	1 cut(s)	118
BpuMI	CCSGG	3 cut(s)	619, 620, 661
BsaAI	YACGTR	1 cut(s)	277
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	8 cut(s)	171, 338, 352, 561, 583, 617, 618, 619
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	2 cut(s)	465, 623
Bse1I	ACTGG	2 cut(s)	244, 642
BseBI	CCWGG	2 cut(s)	91, 339
BseDI	CCNNGG	8 cut(s)	171, 338, 352, 561, 583, 617, 618, 619
BseGI	GGATG	3 cut(s)	128, 326, 455
BseLI	CCNNNNNNNGG	2 cut(s)	465, 623
BseMII	CTCAG	1 cut(s)	132
BseNI	ACTGG	2 cut(s)	244, 642
BseRI	GAGGAG	2 cut(s)	49, 639
BseXI	GCAGC	2 cut(s)	83, 173
BseYI	CCCAGC	1 cut(s)	123
BsgI	GTGCAG	1 cut(s)	490
Bsh1236I	CGCG	3 cut(s)	84, 173, 354
BshFI	GGCC	3 cut(s)	219, 243, 337
BshNI	GGYRCC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	3 cut(s)	191, 619, 661
BslFI	GGGAC	1 cut(s)	221
BslI	CCNNNNNNNGG	2 cut(s)	465, 623
BsmAI	GTCTC	3 cut(s)	91, 446, 563
BsmBI	CGTCTC	1 cut(s)	91
BsmFI	GGGAC	1 cut(s)	221
BsmI	GAATGC	2 cut(s)	527, 538
BsnI	GGCC	3 cut(s)	219, 243, 337
Bso31I	GGTCTC	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	618
Bsp143I	GATC	6 cut(s)	193, 258, 358, 369, 543, 604
Bsp1720I	GCTNAGC	1 cut(s)	118
BspANI	GGCC	3 cut(s)	219, 243, 337
BspCNI	CTCAG	1 cut(s)	131
BspFNI	CGCG	3 cut(s)	84, 173, 354
BspLI	GGNNCC	3 cut(s)	251, 282, 559
BspPI	GGATC	3 cut(s)	201, 538, 612
BspT107I	GGYRCC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	244, 642
BssECI	CCNNGG	8 cut(s)	171, 338, 352, 561, 583, 617, 618, 619
BssMI	GATC	6 cut(s)	193, 258, 358, 369, 543, 604
BssT1I	CCWWGG	2 cut(s)	561, 583
Bst2UI	CCWGG	2 cut(s)	91, 339
Bst4CI	ACNGT	3 cut(s)	313, 376, 491
BstBAI	YACGTR	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	1 cut(s)	118
BstDSI	CCRYGG	2 cut(s)	171, 352
BstF5I	GGATG	3 cut(s)	128, 326, 455
BstFNI	CGCG	3 cut(s)	84, 173, 354
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	6 cut(s)	196, 261, 361, 372, 546, 607
BstMAI	GTCTC	3 cut(s)	91, 446, 563
BstMBI	GATC	6 cut(s)	193, 258, 358, 369, 543, 604
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 161, 167, 170, 269, 278
BstNI	CCWGG	2 cut(s)	91, 339
BstSCI	CCNGG	5 cut(s)	89, 337, 617, 618, 659
BstSFI	CTRYAG	1 cut(s)	211
BstUI	CGCG	3 cut(s)	84, 173, 354
BstV1I	GCAGC	2 cut(s)	83, 173
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BsuRI	GGCC	3 cut(s)	219, 243, 337
BtgI	CCRYGG	2 cut(s)	171, 352
BtsCI	GGATG	3 cut(s)	128, 326, 455
BtsIMutI	CAGTG	1 cut(s)	251
Cac8I	GCNNGC	1 cut(s)	82
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	2 cut(s)	346, 501
Cfr42I	CCGCGG	2 cut(s)	174, 355
Cfr9I	CCCGGG	1 cut(s)	618
CseI	GACGC	2 cut(s)	73, 278
Csp6I	GTAC	1 cut(s)	610
CspCI	CAANNNNNGTGG	2 cut(s)	404, 439
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	1 cut(s)	118
DpnI	GATC	6 cut(s)	195, 260, 360, 371, 545, 606
DpnII	GATC	6 cut(s)	193, 258, 358, 369, 543, 604
EaeI	YGGCCR	2 cut(s)	241, 335
EciI	GGCGGA	1 cut(s)	121
Eco130I	CCWWGG	2 cut(s)	561, 583
Eco31I	GGTCTC	1 cut(s)	563
Eco47I	GGWCC	2 cut(s)	346, 501
Eco88I	CYCGRG	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	629
EcoRII	CCWGG	2 cut(s)	89, 337
EcoT14I	CCWWGG	2 cut(s)	561, 583
EcoT22I	ATGCAT	1 cut(s)	527
ErhI	CCWWGG	2 cut(s)	561, 583
Esp3I	CGTCTC	1 cut(s)	91
FaiI	YATR	4 cut(s)	12, 77, 274, 487
FaqI	GGGAC	1 cut(s)	221
FauI	CCCGC	1 cut(s)	292
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	6 cut(s)	72, 162, 171, 174, 355, 420
FokI	GGATG	3 cut(s)	115, 313, 442
Fsp4HI	GCNGC	6 cut(s)	72, 162, 171, 174, 355, 420
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	6 cut(s)	72, 162, 171, 174, 355, 420
GsaI	CCCAGC	1 cut(s)	127
GsuI	CTGGAG	2 cut(s)	73, 97
HaeIII	GGCC	3 cut(s)	219, 243, 337
HapII	CCGG	3 cut(s)	191, 619, 661
HgaI	GACGC	2 cut(s)	73, 278
HhaI	GCGC	1 cut(s)	485
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	381
HpaII	CCGG	3 cut(s)	191, 619, 661
HphI	GGTGA	2 cut(s)	364, 652
Hpy166II	GTNNAC	2 cut(s)	268, 643
Hpy188I	TCNGA	2 cut(s)	380, 676
Hpy188III	TCNNGA	2 cut(s)	253, 398
Hpy8I	GTNNAC	2 cut(s)	268, 643
Hpy99I	CGWCG	4 cut(s)	269, 272, 323, 380
HpyAV	CCTTC	4 cut(s)	118, 157, 219, 548
HpyCH4III	ACNGT	3 cut(s)	313, 376, 491
HpyCH4IV	ACGT	2 cut(s)	276, 288
HpyCH4V	TGCA	2 cut(s)	507, 525
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 161, 167, 170, 269, 278
HpyF3I	CTNAG	1 cut(s)	118
HpySE526I	ACGT	2 cut(s)	276, 288
HspAI	GCGC	1 cut(s)	483
KspI	CCGCGG	2 cut(s)	174, 355
Kzo9I	GATC	6 cut(s)	193, 258, 358, 369, 543, 604
LmnI	GCTCC	5 cut(s)	19, 62, 255, 323, 392
Lsp1109I	GCAGC	2 cut(s)	83, 173
LweI	GCATC	1 cut(s)	335
MaeII	ACGT	2 cut(s)	276, 288
MaeIII	GTNAC	2 cut(s)	307, 472
MalI	GATC	6 cut(s)	195, 260, 360, 371, 545, 606
MbiI	CCGCTC	1 cut(s)	6
MboI	GATC	6 cut(s)	193, 258, 358, 369, 543, 604
MboII	GAAGA	2 cut(s)	268, 420
MflI	RGATCY	1 cut(s)	604
MlsI	TGGCCA	1 cut(s)	337
MluCI	AATT	2 cut(s)	231, 629
MluNI	TGGCCA	1 cut(s)	337
MmeI	TCCRAC	3 cut(s)	358, 511, 658
Mox20I	TGGCCA	1 cut(s)	337
Mph1103I	ATGCAT	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	337
MseI	TTAA	1 cut(s)	101
Msp20I	TGGCCA	1 cut(s)	337
MspA1I	CMGCKG	2 cut(s)	173, 354
MspI	CCGG	3 cut(s)	191, 619, 661
MspR9I	CCNGG	5 cut(s)	91, 339, 619, 620, 661
Mva1269I	GAATGC	2 cut(s)	527, 538
MvaI	CCWGG	2 cut(s)	91, 339
MvnI	CGCG	3 cut(s)	84, 173, 354
MwoI	GCNNNNNNNGC	6 cut(s)	77, 161, 167, 170, 269, 278
NciI	CCSGG	3 cut(s)	619, 620, 661
NdeII	GATC	6 cut(s)	193, 258, 358, 369, 543, 604
NlaIV	GGNNCC	3 cut(s)	251, 282, 559
NmeAIII	GCCGAG	1 cut(s)	219
NmuCI	GTSAC	2 cut(s)	307, 472
NsiI	ATGCAT	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 327
PctI	GAATGC	2 cut(s)	527, 538
PfeI	GAWTC	1 cut(s)	381
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	6 cut(s)	73, 163, 172, 175, 356, 421
Ppu21I	YACGTR	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	89, 337
PspFI	CCCAGC	1 cut(s)	123
PspGI	CCWGG	2 cut(s)	89, 337
PspN4I	GGNNCC	3 cut(s)	251, 282, 559
PspPI	GGNCC	2 cut(s)	346, 501
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SacII	CCGCGG	2 cut(s)	174, 355
SalI	GTCGAC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	101
SatI	GCNGC	6 cut(s)	72, 162, 171, 174, 355, 420
Sau3AI	GATC	6 cut(s)	193, 258, 358, 369, 543, 604
Sau96I	GGNCC	2 cut(s)	346, 501
ScrFI	CCNGG	5 cut(s)	91, 339, 619, 620, 661
SfaNI	GCATC	1 cut(s)	335
SfcI	CTRYAG	1 cut(s)	211
Sfr303I	CCGCGG	2 cut(s)	174, 355
SgrBI	CCGCGG	2 cut(s)	174, 355
SgrDI	CGTCGACG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	346, 501
SmaI	CCCGGG	1 cut(s)	620
Sse9I	AATT	2 cut(s)	231, 629
StyD4I	CCNGG	5 cut(s)	89, 337, 617, 618, 659
StyI	CCWWGG	2 cut(s)	561, 583
TaaI	ACNGT	3 cut(s)	313, 376, 491
TaiI	ACGT	2 cut(s)	279, 291
TaqI	TCGA	2 cut(s)	267, 542
TaqII	GACCGA	1 cut(s)	334
TasI	AATT	2 cut(s)	231, 629
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	4 cut(s)	173, 176, 357, 422
TfiI	GAWTC	1 cut(s)	381
Tru1I	TTAA	1 cut(s)	101
Tru9I	TTAA	1 cut(s)	101
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	2 cut(s)	307, 472
TseI	GCWGC	2 cut(s)	71, 161
Tsp45I	GTSAC	2 cut(s)	307, 472
TspGWI	ACGGA	2 cut(s)	319, 336
TspMI	CCCGGG	1 cut(s)	618
TspRI	CASTG	1 cut(s)	251
VpaK11BI	GGWCC	2 cut(s)	346, 501
XapI	RAATTY	1 cut(s)	629
XcmI	CCANNNNNNNNNTGG	3 cut(s)	243, 292, 581
XmaI	CCCGGG	1 cut(s)	618
XmiI	GTMKAC	1 cut(s)	267
Zsp2I	ATGCAT	1 cut(s)	527

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.