Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0011892

Physical Location & Seq

Genomic Coordinates Reverse (-)

13604601 .. 13608023

Gene Structure 3423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G149300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGGCCTTAGCTCGCATCTCCAGAAAAGCCCTAACCTCCTTCTCCAGCTCAGCCCAGCCTACCTCACTCCACCGCACCTTCGCCGCCGAAGCATCAAAAGCCGCGGCCATAACACCCTCGCCGGATCGGGTCAAATGGGACTACCGAGGTCAGAGAAAGATAATCCCGCTAGGCCAGTGGCTGCCGAAGATCGCCGTCGACGCCTACGTGGCACCCAACGTGGTCTTGGCCGGACAGGTCACGGTAAACGACGGAGCCTCCGTTTGGCCTGGGTCGGTCCTACGCGGTGATCTCAATAAGATCACCGTCGGCTTCTGCTCCAATGTTCAGGAACGCTGTGTCCTTCACGCTGCTTGGTCTTCCCCTACAGGACTTCCAGCAGAGACATCCATAGAGAGGTTTGTGACTATTGGTGCATACAGTCTGTTACGGTCCTGTACAATTGAGCCAGAATGCATTATTGGGCAGCATTCGATTCTCATGGAAGGTTCCTTGGTGGAGACCCATGCTATCCTTGAAGCTGGATCTGTCGTTCCCCCAGGGAGAAGAATTCCAACTGGTGAACTTTGGGCTGGAAACCCAGCAAGGTTTGTCCGAACCCTGACGCATGAAGAGACCTTGGAAATCCCCAAACTTGCTGTCGCAATAAATGATTTAAGCAAAGAATATTTCCAAGAATTCCTCCCTTACTCCACAGTATACTTGGAGGTTGAAAAGTTCAAGAAGTCTTTGGGGATTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009853 GO:0009987 GO:0010033 GO:0010228 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070469 GO:0097305 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

250

Amino Acids

27.09

Weight (kDa)

8.33

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48680 AT5G63510 AT5G63510
fragaria_vesca	FvH4_5g08540
malus_domestica	MD06G1140000.v1.1 MD14G1155400.v1.1
prunus_persica	Prupe.5G149300_v2.0.a1
pyrus_communis	pycom06g13030 pycom14g12910
rosa_chinensis	RchiOBHm_Chr7g0189861
rosa_laevigata	RLG00000004581
rosa_multiflora	Rmu_sc0000512.1_g000019
rosa_roxburghii	Rroxscaffold_3G00265080
rosa_rugosa	Rorug06G0500300
rosa_samantha	Rh7AG105700 Rh7BG108500 Rh7CG110500 Rh7DG108800
rosa_wichuraiana	Rw7G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccI	GTMKAC	2 cut(s)	201, 702
AccII	CGCG	2 cut(s)	107, 288
AciI	CCGC	7 cut(s)	5, 76, 87, 105, 107, 170, 288
AclWI	GGATC	2 cut(s)	135, 535
AcoI	YGGCCR	2 cut(s)	108, 231
AcsI	RAATTY	2 cut(s)	552, 680
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	1 cut(s)	442
AfiI	CCNNNNNNNGG	2 cut(s)	267, 399
AgsI	TTSAA	3 cut(s)	521, 716, 724
AjnI	CCWGG	2 cut(s)	271, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	447, 479
AloI	GAACNNNNNNTCC	4 cut(s)	327, 359, 519, 551
AluBI	AGCT	3 cut(s)	14, 51, 524
AluI	AGCT	3 cut(s)	14, 51, 524
Alw26I	GTCTC	3 cut(s)	380, 497, 611
AlwI	GGATC	2 cut(s)	135, 535
AlwNI	CAGNNNCTG	1 cut(s)	184
AoxI	GGCC	5 cut(s)	6, 108, 175, 231, 269
ApeKI	GCWGC	3 cut(s)	184, 353, 469
ApoI	RAATTY	2 cut(s)	552, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	627, 659
AspS9I	GGNCC	2 cut(s)	280, 435
AsuHPI	GGTGA	3 cut(s)	298, 302, 575
AvaII	GGWCC	2 cut(s)	280, 435
BanI	GGYRCC	1 cut(s)	214
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	171, 340, 481
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	2 cut(s)	273, 543
BcoDI	GTCTC	3 cut(s)	380, 497, 611
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	369
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	7 cut(s)	6, 87, 105, 108, 185, 354, 470
BlpI	GCTNAGC	1 cut(s)	52
BlsI	GCNGC	7 cut(s)	7, 88, 106, 109, 186, 355, 471
Bme1390I	CCNGG	2 cut(s)	273, 543
Bme18I	GGWCC	2 cut(s)	280, 435
BmgT120I	GGNCC	2 cut(s)	280, 435
BmiI	GGNNCC	3 cut(s)	216, 259, 493
BmrFI	CCNGG	2 cut(s)	273, 543
BmsI	GCATC	2 cut(s)	27, 104
BpiI	GAAGAC	1 cut(s)	354
BpmI	CTGGAG	2 cut(s)	7, 31
Bpu10I	CCTNAGC	1 cut(s)	10
Bpu1102I	GCTNAGC	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	204
BsaI	GGTCTC	2 cut(s)	497, 611
BsaJI	CCNNGG	7 cut(s)	105, 148, 272, 495, 541, 542, 621
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 249, 275, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 399
Bse1I	ACTGG	2 cut(s)	178, 565
BseBI	CCWGG	2 cut(s)	273, 543
BseDI	CCNNGG	7 cut(s)	105, 148, 272, 495, 541, 542, 621
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	267, 399
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	2 cut(s)	178, 565
BseXI	GCAGC	3 cut(s)	171, 340, 481
BseYI	CCCAGC	2 cut(s)	57, 583
Bsh1236I	CGCG	2 cut(s)	107, 288
BshFI	GGCC	5 cut(s)	8, 110, 177, 233, 271
BshNI	GGYRCC	1 cut(s)	214
BsiSI	CCGG	2 cut(s)	125, 234
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	267, 399
BsmAI	GTCTC	3 cut(s)	380, 497, 611
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	2 cut(s)	461, 472
BsnI	GGCC	5 cut(s)	8, 110, 177, 233, 271
Bso31I	GGTCTC	2 cut(s)	497, 611
Bsp1407I	TGTACA	1 cut(s)	440
Bsp143I	GATC	5 cut(s)	127, 192, 292, 303, 527
Bsp1720I	GCTNAGC	1 cut(s)	52
BspACI	CCGC	7 cut(s)	5, 76, 87, 105, 107, 170, 288
BspANI	GGCC	5 cut(s)	8, 110, 177, 233, 271
BspCNI	CTCAG	1 cut(s)	65
BspFNI	CGCG	2 cut(s)	107, 288
BspLI	GGNNCC	3 cut(s)	216, 259, 493
BspPI	GGATC	2 cut(s)	135, 535
BspT107I	GGYRCC	1 cut(s)	214
BspTNI	GGTCTC	2 cut(s)	497, 611
BsrGI	TGTACA	1 cut(s)	440
BsrI	ACTGG	2 cut(s)	178, 565
BssECI	CCNNGG	7 cut(s)	105, 148, 272, 495, 541, 542, 621
BssMI	GATC	5 cut(s)	127, 192, 292, 303, 527
BssNAI	GTATAC	1 cut(s)	703
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	2 cut(s)	495, 621
Bst1107I	GTATAC	1 cut(s)	703
Bst2UI	CCWGG	2 cut(s)	273, 543
Bst4CI	ACNGT	5 cut(s)	247, 310, 425, 435, 700
Bst6I	CTCTTC	1 cut(s)	609
BstACI	GRCGYC	1 cut(s)	204
BstAUI	TGTACA	1 cut(s)	440
BstBAI	YACGTR	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	2 cut(s)	10, 52
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	2 cut(s)	107, 288
BstKTI	GATC	5 cut(s)	130, 195, 295, 306, 530
BstMAI	GTCTC	3 cut(s)	380, 497, 611
BstMBI	GATC	5 cut(s)	127, 192, 292, 303, 527
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 92, 101, 203, 212
BstNI	CCWGG	2 cut(s)	273, 543
BstSCI	CCNGG	2 cut(s)	271, 541
BstSFI	CTRYAG	1 cut(s)	369
BstUI	CGCG	2 cut(s)	107, 288
BstV1I	GCAGC	3 cut(s)	171, 340, 481
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
BstZ17I	GTATAC	1 cut(s)	703
BsuRI	GGCC	5 cut(s)	8, 110, 177, 233, 271
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	1 cut(s)	389
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	184
Cfr13I	GGNCC	2 cut(s)	280, 435
Cfr42I	CCGCGG	1 cut(s)	108
CseI	GACGC	2 cut(s)	212, 616
Csp6I	GTAC	1 cut(s)	441
CviAII	CATG	3 cut(s)	484, 509, 611
CviQI	GTAC	1 cut(s)	441
DdeI	CTNAG	2 cut(s)	10, 52
DpnI	GATC	5 cut(s)	129, 194, 294, 305, 529
DpnII	GATC	5 cut(s)	127, 192, 292, 303, 527
EaeI	YGGCCR	2 cut(s)	108, 231
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco130I	CCWWGG	2 cut(s)	495, 621
Eco31I	GGTCTC	2 cut(s)	497, 611
Eco47I	GGWCC	2 cut(s)	280, 435
EcoRI	GAATTC	2 cut(s)	552, 680
EcoRII	CCWGG	2 cut(s)	271, 541
EcoT14I	CCWWGG	2 cut(s)	495, 621
EcoT22I	ATGCAT	1 cut(s)	461
ErhI	CCWWGG	2 cut(s)	495, 621
FaeI	CATG	3 cut(s)	487, 512, 614
FaiI	YATR	7 cut(s)	113, 395, 421, 485, 510, 612, 703
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	483, 508, 610
FauI	CCCGC	1 cut(s)	177
FblI	GTMKAC	2 cut(s)	201, 702
Fnu4HI	GCNGC	7 cut(s)	6, 87, 105, 108, 185, 354, 470
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	7 cut(s)	6, 87, 105, 108, 185, 354, 470
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	7 cut(s)	6, 87, 105, 108, 185, 354, 470
GsaI	CCCAGC	2 cut(s)	61, 587
GsuI	CTGGAG	2 cut(s)	7, 31
HaeIII	GGCC	5 cut(s)	8, 110, 177, 233, 271
HapII	CCGG	2 cut(s)	125, 234
HgaI	GACGC	2 cut(s)	212, 616
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	487, 512, 614
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	478
HpaII	CCGG	2 cut(s)	125, 234
HphI	GGTGA	3 cut(s)	298, 302, 575
Hpy166II	GTNNAC	4 cut(s)	202, 250, 566, 703
Hpy188I	TCNGA	2 cut(s)	156, 599
Hpy188III	TCNNGA	3 cut(s)	24, 332, 724
Hpy8I	GTNNAC	4 cut(s)	202, 250, 566, 703
Hpy99I	CGWCG	4 cut(s)	203, 206, 257, 314
HpyAV	CCTTC	4 cut(s)	52, 91, 356, 482
HpyCH4III	ACNGT	5 cut(s)	247, 310, 425, 435, 700
HpyCH4IV	ACGT	2 cut(s)	210, 222
HpyCH4V	TGCA	2 cut(s)	419, 459
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 92, 101, 203, 212
HpyF3I	CTNAG	2 cut(s)	10, 52
HpySE526I	ACGT	2 cut(s)	210, 222
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	487, 512, 614
KspI	CCGCGG	1 cut(s)	108
Kzo9I	GATC	5 cut(s)	127, 192, 292, 303, 527
LmnI	GCTCC	2 cut(s)	257, 326
Lsp1109I	GCAGC	3 cut(s)	171, 340, 481
LweI	GCATC	2 cut(s)	27, 104
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	2 cut(s)	210, 222
MaeIII	GTNAC	3 cut(s)	241, 406, 429
MalI	GATC	5 cut(s)	129, 194, 294, 305, 529
MboI	GATC	5 cut(s)	127, 192, 292, 303, 527
MboII	GAAGA	4 cut(s)	202, 354, 561, 626
MfeI	CAATTG	1 cut(s)	444
MflI	RGATCY	1 cut(s)	527
MluCI	AATT	3 cut(s)	444, 552, 680
MmeI	TCCRAC	1 cut(s)	581
MnlI	CCTC	8 cut(s)	49, 76, 130, 143, 271, 393, 695, 703
Mph1103I	ATGCAT	1 cut(s)	461
MseI	TTAA	1 cut(s)	659
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	125, 234
MspR9I	CCNGG	2 cut(s)	273, 543
MunI	CAATTG	1 cut(s)	444
Mva1269I	GAATGC	2 cut(s)	461, 472
MvaI	CCWGG	2 cut(s)	273, 543
MvnI	CGCG	2 cut(s)	107, 288
MwoI	GCNNNNNNNGC	5 cut(s)	11, 92, 101, 203, 212
NdeII	GATC	5 cut(s)	127, 192, 292, 303, 527
NlaIII	CATG	3 cut(s)	487, 512, 614
NlaIV	GGNNCC	3 cut(s)	216, 259, 493
NmuCI	GTSAC	2 cut(s)	241, 406
NsiI	ATGCAT	1 cut(s)	461
PasI	CCCWGGG	1 cut(s)	542
PcsI	WCGNNNNNNNCGW	2 cut(s)	207, 261
PctI	GAATGC	2 cut(s)	461, 472
PfeI	GAWTC	1 cut(s)	478
PkrI	GCNGC	7 cut(s)	7, 88, 106, 109, 186, 355, 471
Ppu21I	YACGTR	1 cut(s)	211
Psp6I	CCWGG	2 cut(s)	271, 541
PspFI	CCCAGC	2 cut(s)	57, 583
PspGI	CCWGG	2 cut(s)	271, 541
PspN4I	GGNNCC	3 cut(s)	216, 259, 493
PspPI	GGNCC	2 cut(s)	280, 435
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	527
RsaI	GTAC	1 cut(s)	442
RsaNI	GTAC	1 cut(s)	441
SacII	CCGCGG	1 cut(s)	108
SalI	GTCGAC	1 cut(s)	200
SaqAI	TTAA	1 cut(s)	659
SatI	GCNGC	7 cut(s)	6, 87, 105, 108, 185, 354, 470
Sau3AI	GATC	5 cut(s)	127, 192, 292, 303, 527
Sau96I	GGNCC	2 cut(s)	280, 435
ScrFI	CCNGG	2 cut(s)	273, 543
SfaNI	GCATC	2 cut(s)	27, 104
SfcI	CTRYAG	1 cut(s)	369
Sfr303I	CCGCGG	1 cut(s)	108
SgrBI	CCGCGG	1 cut(s)	108
SgrDI	CGTCGACG	1 cut(s)	200
SinI	GGWCC	2 cut(s)	280, 435
Sse9I	AATT	3 cut(s)	444, 552, 680
SsiI	CCGC	7 cut(s)	5, 76, 87, 105, 107, 170, 288
SspI	AATATT	1 cut(s)	671
SspMI	CTAG	1 cut(s)	173
StyD4I	CCNGG	2 cut(s)	271, 541
StyI	CCWWGG	2 cut(s)	495, 621
TaaI	ACNGT	5 cut(s)	247, 310, 425, 435, 700
TaiI	ACGT	2 cut(s)	213, 225
TaqI	TCGA	2 cut(s)	201, 476
TaqII	GACCGA	1 cut(s)	268
TasI	AATT	3 cut(s)	444, 552, 680
TatI	WGTACW	1 cut(s)	440
TauI	GCSGC	4 cut(s)	8, 89, 107, 110
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	1 cut(s)	659
Tru9I	TTAA	1 cut(s)	659
TscAI	CASTG	1 cut(s)	185
TseFI	GTSAC	2 cut(s)	241, 406
TseI	GCWGC	3 cut(s)	184, 353, 469
Tsp45I	GTSAC	2 cut(s)	241, 406
TspDTI	ATGAA	1 cut(s)	627
TspGWI	ACGGA	2 cut(s)	253, 270
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	280, 435
XapI	RAATTY	2 cut(s)	552, 680
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 703
XmiI	GTMKAC	2 cut(s)	201, 702
XspI	CTAG	1 cut(s)	173
Zsp2I	ATGCAT	1 cut(s)	461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.