Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0011892

Physical Location & Seq

Genomic Coordinates Reverse (-)

9344454 .. 9347116

Gene Structure 2663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG108800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGCGGCTTTAGCTCGCGTCTCGAGGCAAGCCCTGAGCTCCGTCGCCCCATCGTCCCAAGCCACCTTCCTCCACCGCGCGCTCGCCACCGAAGCCGCAAGGGCCATAACCCCATCGTCGGATCGGGTCAAGTGGGACTACCGAGGCCAGCGAAAGATAATCCCACTGGGACAGTGGCTCCCCAAGATCGCCGTCGACGCCTTCGTCGCGCCCAACGTCGTCCTGGCCGGCCAGGTCACGGTCAACGACGGAGCCTCCGTCTGGCCCGGCTCGGTCCTCCGCGGCGATCTCAATAAGATCACCGTCGGCTTCTGCTCCAATGTTCAGGAACGGTGTGTGCTCCACGCCGCTTGGTCTTCCCCCACAGGACTTCCAGCGGATACATCCATTGAGAGGTTTGTGACTATTGGTGCATACAGTCTGTTGCGGTCCTGCACAGTTGAGCCAGAATGCATTATTGGGCAGCATTCCATTCTTATGGAAGGTTCCTTGGTGGAGACCCATTCTATCCTTGAAGCCGGGTCTGTGGTTCCCCCAGGGAGGAGAATTCCGACTGGTGAACTTTGGGCTGGAAATCCAGCAAGATTTGTCCGAACTCTGACCCATGAAGAGACCTTGGAGATCCCCAAACTTGCCGTTGCCATAAATGATCTGAGTAAAGAATATTTCCAGGAATACCTCCCTTACTCCACAGTATATCTGGAGGTTGAAAAGTTCAAGAAATCTTTGGGGATTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009853 GO:0009987 GO:0010033 GO:0010228 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070469 GO:0097305 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

247

Amino Acids

26.87

Weight (kDa)

7.7

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48680 AT5G63510 AT5G63510
fragaria_vesca	FvH4_5g08540
malus_domestica	MD06G1140000.v1.1 MD14G1155400.v1.1
prunus_persica	Prupe.5G149300_v2.0.a1
pyrus_communis	pycom06g13030 pycom14g12910
rosa_chinensis	RchiOBHm_Chr7g0189861
rosa_laevigata	RLG00000004581
rosa_multiflora	Rmu_sc0000512.1_g000019
rosa_roxburghii	Rroxscaffold_3G00265080
rosa_rugosa	Rorug06G0500300
rosa_samantha	Rh7AG105700 Rh7BG108500 Rh7CG110500 Rh7DG108800
rosa_wichuraiana	Rw7G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	5 cut(s)	18, 78, 80, 209, 282
AciI	CCGC	8 cut(s)	5, 76, 96, 280, 282, 348, 377, 427
AclWI	GGATC	2 cut(s)	129, 616
AcoI	YGGCCR	2 cut(s)	225, 229
AcsI	RAATTY	1 cut(s)	546
AcyI	GRCGYC	1 cut(s)	198
AfiI	CCNNNNNNNGG	5 cut(s)	118, 238, 261, 393, 540
AgsI	TTSAA	3 cut(s)	515, 710, 718
AjnI	CCWGG	4 cut(s)	222, 231, 535, 669
AjuI	GAANNNNNNNTTGG	2 cut(s)	441, 473
AluBI	AGCT	2 cut(s)	14, 39
AluI	AGCT	2 cut(s)	14, 39
Alw21I	GWGCWC	2 cut(s)	41, 342
Alw26I	GTCTC	3 cut(s)	25, 491, 605
AlwI	GGATC	2 cut(s)	129, 616
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	5 cut(s)	102, 145, 225, 229, 263
ApeKI	GCWGC	1 cut(s)	463
ApoI	RAATTY	1 cut(s)	546
AspLEI	GCGC	3 cut(s)	80, 82, 211
AspS9I	GGNCC	4 cut(s)	102, 264, 274, 429
AsuC2I	CCSGG	2 cut(s)	267, 520
AsuHPI	GGTGA	2 cut(s)	292, 569
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	274, 429
BanII	GRGCYC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	348
Bbv12I	GWGCWC	2 cut(s)	41, 342
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	2 cut(s)	58, 121
BceAI	ACGGC	2 cut(s)	176, 620
BciT130I	CCWGG	4 cut(s)	224, 233, 537, 671
BciVI	GTATCC	1 cut(s)	373
BcnI	CCSGG	2 cut(s)	267, 520
BcoDI	GTCTC	3 cut(s)	25, 491, 605
BfuI	GTATCC	1 cut(s)	373
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	5 cut(s)	6, 96, 283, 348, 464
BlsI	GCNGC	5 cut(s)	7, 97, 284, 349, 465
Bme1390I	CCNGG	6 cut(s)	224, 233, 267, 520, 537, 671
Bme18I	GGWCC	2 cut(s)	274, 429
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	4 cut(s)	102, 264, 274, 429
BmiI	GGNNCC	4 cut(s)	179, 253, 487, 531
BmrFI	CCNGG	6 cut(s)	224, 233, 267, 520, 537, 671
BmrI	ACTGGG	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	722
Bpu10I	CCTNAGC	1 cut(s)	35
BpuMI	CCSGG	2 cut(s)	267, 520
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	2 cut(s)	491, 605
BsaJI	CCNNGG	6 cut(s)	142, 280, 489, 535, 536, 615
BsaXI	ACNNNNNCTCC	6 cut(s)	162, 192, 239, 243, 269, 273
Bsc4I	CCNNNNNNNGG	5 cut(s)	118, 238, 261, 393, 540
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	171, 559
BseBI	CCWGG	4 cut(s)	224, 233, 537, 671
BseDI	CCNNGG	6 cut(s)	142, 280, 489, 535, 536, 615
BseGI	GGATG	1 cut(s)	383
BseLI	CCNNNNNNNGG	5 cut(s)	118, 238, 261, 393, 540
BseMII	CTCAG	2 cut(s)	26, 644
BseNI	ACTGG	2 cut(s)	171, 559
BsePI	GCGCGC	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	556
BseXI	GCAGC	1 cut(s)	475
BsgI	GTGCAG	1 cut(s)	418
Bsh1236I	CGCG	5 cut(s)	18, 78, 80, 209, 282
BshFI	GGCC	5 cut(s)	104, 147, 227, 231, 265
BsiHKAI	GWGCWC	2 cut(s)	41, 342
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	3 cut(s)	228, 267, 519
BslFI	GGGAC	3 cut(s)	40, 149, 183
BslI	CCNNNNNNNGG	5 cut(s)	118, 238, 261, 393, 540
BsmAI	GTCTC	3 cut(s)	25, 491, 605
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	3 cut(s)	40, 149, 183
BsmI	GAATGC	2 cut(s)	455, 466
BsnI	GGCC	5 cut(s)	104, 147, 227, 231, 265
Bso31I	GGTCTC	2 cut(s)	491, 605
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	41, 342
Bsp143I	GATC	6 cut(s)	121, 186, 286, 297, 621, 649
BspACI	CCGC	8 cut(s)	5, 76, 96, 280, 282, 348, 377, 427
BspANI	GGCC	5 cut(s)	104, 147, 227, 231, 265
BspCNI	CTCAG	2 cut(s)	27, 645
BspFNI	CGCG	5 cut(s)	18, 78, 80, 209, 282
BspLI	GGNNCC	4 cut(s)	179, 253, 487, 531
BspPI	GGATC	2 cut(s)	129, 616
BspTNI	GGTCTC	2 cut(s)	491, 605
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	171, 559
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	6 cut(s)	142, 280, 489, 535, 536, 615
BssHII	GCGCGC	1 cut(s)	78
BssMI	GATC	6 cut(s)	121, 186, 286, 297, 621, 649
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	489, 615
Bst2UI	CCWGG	4 cut(s)	224, 233, 537, 671
Bst4CI	ACNGT	7 cut(s)	174, 241, 304, 333, 419, 439, 694
Bst6I	CTCTTC	1 cut(s)	603
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	6 cut(s)	16, 30, 80, 84, 149, 229
BstDEI	CTNAG	2 cut(s)	35, 653
BstDSI	CCRYGG	1 cut(s)	280
BstF5I	GGATG	1 cut(s)	383
BstFNI	CGCG	5 cut(s)	18, 78, 80, 209, 282
BstHHI	GCGC	3 cut(s)	80, 82, 211
BstKTI	GATC	6 cut(s)	124, 189, 289, 300, 624, 652
BstMAI	GTCTC	3 cut(s)	25, 491, 605
BstMBI	GATC	6 cut(s)	121, 186, 286, 297, 621, 649
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 92, 101, 197, 206
BstNI	CCWGG	4 cut(s)	224, 233, 537, 671
BstSCI	CCNGG	6 cut(s)	222, 231, 265, 518, 535, 669
BstUI	CGCG	5 cut(s)	18, 78, 80, 209, 282
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	621
BstXI	CCANNNNNNTGG	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	621
BsuI	GTATCC	1 cut(s)	373
BsuRI	GGCC	5 cut(s)	104, 147, 227, 231, 265
BtgI	CCRYGG	1 cut(s)	280
BtsCI	GGATG	1 cut(s)	383
BtsIMutI	CAGTG	2 cut(s)	164, 179
Cac8I	GCNNGC	6 cut(s)	16, 30, 80, 84, 149, 229
CfoI	GCGC	3 cut(s)	80, 82, 211
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	4 cut(s)	102, 264, 274, 429
Cfr42I	CCGCGG	1 cut(s)	283
CseI	GACGC	2 cut(s)	7, 206
CspCI	CAANNNNNGTGG	2 cut(s)	332, 367
CviAII	CATG	1 cut(s)	605
DdeI	CTNAG	2 cut(s)	35, 653
DpnI	GATC	6 cut(s)	123, 188, 288, 299, 623, 651
DpnII	GATC	6 cut(s)	121, 186, 286, 297, 621, 649
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
EaeI	YGGCCR	2 cut(s)	225, 229
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Ecl136II	GAGCTC	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	489, 615
Eco24I	GRGCYC	1 cut(s)	41
Eco31I	GGTCTC	2 cut(s)	491, 605
Eco47I	GGWCC	2 cut(s)	274, 429
Eco53kI	GAGCTC	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	546
EcoRII	CCWGG	4 cut(s)	222, 231, 535, 669
EcoT14I	CCWWGG	2 cut(s)	489, 615
EcoT22I	ATGCAT	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	2 cut(s)	489, 615
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	1 cut(s)	608
FaiI	YATR	6 cut(s)	107, 415, 479, 606, 644, 697
FaqI	GGGAC	3 cut(s)	40, 149, 183
FatI	CATG	1 cut(s)	604
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	5 cut(s)	6, 96, 283, 348, 464
FokI	GGATG	1 cut(s)	370
FriOI	GRGCYC	1 cut(s)	41
FseI	GGCCGGCC	1 cut(s)	231
Fsp4HI	GCNGC	5 cut(s)	6, 96, 283, 348, 464
GlaI	GCGC	3 cut(s)	79, 81, 210
GluI	GCNGC	5 cut(s)	6, 96, 283, 348, 464
GsuI	CTGGAG	1 cut(s)	722
HaeIII	GGCC	5 cut(s)	104, 147, 227, 231, 265
HapII	CCGG	3 cut(s)	228, 267, 519
HgaI	GACGC	2 cut(s)	7, 206
HhaI	GCGC	3 cut(s)	80, 82, 211
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	608
Hin6I	GCGC	3 cut(s)	78, 80, 209
HinP1I	GCGC	3 cut(s)	78, 80, 209
HincII	GTYRAC	2 cut(s)	196, 244
HindII	GTYRAC	2 cut(s)	196, 244
HpaII	CCGG	3 cut(s)	228, 267, 519
HphI	GGTGA	2 cut(s)	292, 569
Hpy166II	GTNNAC	3 cut(s)	196, 244, 560
Hpy188I	TCNGA	5 cut(s)	121, 552, 593, 600, 654
Hpy188III	TCNNGA	4 cut(s)	22, 326, 701, 718
Hpy8I	GTNNAC	3 cut(s)	196, 244, 560
Hpy99I	CGWCG	8 cut(s)	47, 121, 197, 200, 209, 221, 251, 308
HpyAV	CCTTC	3 cut(s)	76, 211, 476
HpyCH4III	ACNGT	7 cut(s)	174, 241, 304, 333, 419, 439, 694
HpyCH4IV	ACGT	1 cut(s)	216
HpyCH4V	TGCA	3 cut(s)	413, 435, 453
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 92, 101, 197, 206
HpyF3I	CTNAG	2 cut(s)	35, 653
HpySE526I	ACGT	1 cut(s)	216
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	608
HspAI	GCGC	3 cut(s)	78, 80, 209
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
KspI	CCGCGG	1 cut(s)	283
Kzo9I	GATC	6 cut(s)	121, 186, 286, 297, 621, 649
LmnI	GCTCC	5 cut(s)	44, 183, 251, 320, 345
Lsp1109I	GCAGC	1 cut(s)	475
MaeII	ACGT	1 cut(s)	216
MaeIII	GTNAC	2 cut(s)	235, 400
MalI	GATC	6 cut(s)	123, 188, 288, 299, 623, 651
MboI	GATC	6 cut(s)	121, 186, 286, 297, 621, 649
MboII	GAAGA	2 cut(s)	348, 620
MflI	RGATCY	1 cut(s)	621
MhlI	GDGCHC	2 cut(s)	41, 342
MluCI	AATT	1 cut(s)	546
MmeI	TCCRAC	2 cut(s)	99, 575
MnlI	CCTC	9 cut(s)	18, 80, 137, 265, 287, 387, 534, 689, 697
Mph1103I	ATGCAT	1 cut(s)	455
MroNI	GCCGGC	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	476
MspA1I	CMGCKG	2 cut(s)	282, 377
MspI	CCGG	3 cut(s)	228, 267, 519
MspR9I	CCNGG	6 cut(s)	224, 233, 267, 520, 537, 671
Mva1269I	GAATGC	2 cut(s)	455, 466
MvaI	CCWGG	4 cut(s)	224, 233, 537, 671
MvnI	CGCG	5 cut(s)	18, 78, 80, 209, 282
MwoI	GCNNNNNNNGC	5 cut(s)	11, 92, 101, 197, 206
NaeI	GCCGGC	1 cut(s)	229
NciI	CCSGG	2 cut(s)	267, 520
NdeII	GATC	6 cut(s)	121, 186, 286, 297, 621, 649
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	1 cut(s)	608
NlaIV	GGNNCC	4 cut(s)	179, 253, 487, 531
NmuCI	GTSAC	2 cut(s)	235, 400
NsiI	ATGCAT	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	22
PasI	CCCWGGG	1 cut(s)	536
PauI	GCGCGC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	3 cut(s)	201, 213, 255
PctI	GAATGC	2 cut(s)	455, 466
PdiI	GCCGGC	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	669
PkrI	GCNGC	5 cut(s)	7, 97, 284, 349, 465
Psp124BI	GAGCTC	1 cut(s)	41
Psp6I	CCWGG	4 cut(s)	222, 231, 535, 669
PspGI	CCWGG	4 cut(s)	222, 231, 535, 669
PspN4I	GGNNCC	4 cut(s)	179, 253, 487, 531
PspPI	GGNCC	4 cut(s)	102, 264, 274, 429
PsuI	RGATCY	1 cut(s)	621
PteI	GCGCGC	1 cut(s)	78
RigI	GGCCGGCC	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	476
SacI	GAGCTC	1 cut(s)	41
SacII	CCGCGG	1 cut(s)	283
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	5 cut(s)	6, 96, 283, 348, 464
Sau3AI	GATC	6 cut(s)	121, 186, 286, 297, 621, 649
Sau96I	GGNCC	4 cut(s)	102, 264, 274, 429
ScrFI	CCNGG	6 cut(s)	224, 233, 267, 520, 537, 671
SduI	GDGCHC	2 cut(s)	41, 342
Sfr274I	CTCGAG	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	283
SgrBI	CCGCGG	1 cut(s)	283
SgrDI	CGTCGACG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	274, 429
SlaI	CTCGAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	1 cut(s)	546
SsiI	CCGC	8 cut(s)	5, 76, 96, 280, 282, 348, 377, 427
SspI	AATATT	1 cut(s)	665
SstI	GAGCTC	1 cut(s)	41
StyD4I	CCNGG	6 cut(s)	222, 231, 265, 518, 535, 669
StyI	CCWWGG	2 cut(s)	489, 615
TaaI	ACNGT	7 cut(s)	174, 241, 304, 333, 419, 439, 694
TaiI	ACGT	1 cut(s)	219
TaqI	TCGA	2 cut(s)	23, 195
TaqII	GACCGA	1 cut(s)	262
TasI	AATT	1 cut(s)	546
TauI	GCSGC	4 cut(s)	8, 98, 285, 350
TscAI	CASTG	2 cut(s)	171, 179
TseFI	GTSAC	2 cut(s)	235, 400
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	2 cut(s)	235, 400
TspDTI	ATGAA	1 cut(s)	621
TspGWI	ACGGA	3 cut(s)	31, 247, 264
TspRI	CASTG	2 cut(s)	171, 179
VpaK11BI	GGWCC	2 cut(s)	274, 429
XapI	RAATTY	1 cut(s)	546
XcmI	CCANNNNNNNNNTGG	3 cut(s)	171, 220, 697
XhoI	CTCGAG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.