Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0011892

Physical Location & Seq

Genomic Coordinates Reverse (-)

8630050 .. 8632715

Gene Structure 2666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G009160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCGGCTTTAGCTCGCGTCTCGAGGCAAGCCCTGAGCTCCGTCGCCCCATCGTCCCAAGCCACCTTCCTCCACCGCGCGCTCGCCACCGAAGCCGCAAAGGCCATAACCCCATCGTCGGATCGGGTCAAGTGGGACTACCGAGGCCAGCGAAAGATAATCCCACTGGGACAGTGGCTCCCCAAGATCGCCGTCGACGCCTTCGTCACGGTCAACGACGGAGCCTCCGTCTGGCCCGGCTCGGTCCTCCGCGGCGATCTCAATAAGATCACCGTCGGCTTCTGCTCCAATATTCAGGAACGGTGTGTGCTCCACGCCGCTTGGTCTTCCCCCACAGGACTTCCAGCGGATACATCCATTGAGAGGTTTGTGACTATTGGTGCATACAGTCTGTTGCGGTCCTGCACAGTTGAGCCAGAATGCATTATTGGGCAGCATTCCATTCTTATGGAAGGTTCCTTGGTGGAGACCCATTCTATCCTTGAAGCCGGGTCTGTGGTTCCCCCAGGGAGGAGAATTCCGACTGGTGAACTTTGGGCTGGAAATCCAGCGAGATTTGTCCGAACTCTGACCCATGAAGAGACCTTGGAGATCCCCAAACTTGCCGTTGCCATAAATGATCTGAGTAAAGAATATTTCCAGGAATACCTCCCTTACTCCACAGTATATCTGGAGGTTGAAAAGTTCAAGAAATCTTTGGGGATTTCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0005773 GO:0005774 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009853 GO:0009987 GO:0010033 GO:0010228 GO:0016020 GO:0019866 GO:0022414 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0033993 GO:0042221 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070469 GO:0097305 GO:0098588 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:0098805 GO:1901700 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hexapep

Protein Analysis

237

Amino Acids

25.91

Weight (kDa)

7.7

Isoelectric Point (pI)

40.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48680 AT5G63510 AT5G63510
fragaria_vesca	FvH4_5g08540
malus_domestica	MD06G1140000.v1.1 MD14G1155400.v1.1
prunus_persica	Prupe.5G149300_v2.0.a1
pyrus_communis	pycom06g13030 pycom14g12910
rosa_chinensis	RchiOBHm_Chr7g0189861
rosa_laevigata	RLG00000004581
rosa_multiflora	Rmu_sc0000512.1_g000019
rosa_roxburghii	Rroxscaffold_3G00265080
rosa_rugosa	Rorug06G0500300
rosa_samantha	Rh7AG105700 Rh7BG108500 Rh7CG110500 Rh7DG108800
rosa_wichuraiana	Rw7G009160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	4 cut(s)	18, 78, 80, 252
AciI	CCGC	8 cut(s)	5, 76, 96, 250, 252, 318, 347, 397
AclWI	GGATC	2 cut(s)	129, 586
AcsI	RAATTY	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	198
AfiI	CCNNNNNNNGG	4 cut(s)	118, 231, 363, 510
AgsI	TTSAA	3 cut(s)	485, 680, 688
AjnI	CCWGG	2 cut(s)	505, 639
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	2 cut(s)	14, 39
AluI	AGCT	2 cut(s)	14, 39
Alw21I	GWGCWC	2 cut(s)	41, 312
Alw26I	GTCTC	3 cut(s)	25, 461, 575
AlwI	GGATC	2 cut(s)	129, 586
Ama87I	CYCGRG	1 cut(s)	22
AoxI	GGCC	3 cut(s)	102, 145, 233
ApeKI	GCWGC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	516
AspLEI	GCGC	2 cut(s)	80, 82
AspS9I	GGNCC	3 cut(s)	234, 244, 399
AsuC2I	CCSGG	2 cut(s)	237, 490
AsuHPI	GGTGA	2 cut(s)	262, 539
AvaI	CYCGRG	1 cut(s)	22
AvaII	GGWCC	2 cut(s)	244, 399
BanII	GRGCYC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	318
Bbv12I	GWGCWC	2 cut(s)	41, 312
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	2 cut(s)	58, 121
BceAI	ACGGC	2 cut(s)	176, 590
BciT130I	CCWGG	2 cut(s)	507, 641
BciVI	GTATCC	1 cut(s)	343
BcnI	CCSGG	2 cut(s)	237, 490
BcoDI	GTCTC	3 cut(s)	25, 461, 575
BfuI	GTATCC	1 cut(s)	343
BglI	GCCNNNNNGGC	1 cut(s)	101
BisI	GCNGC	5 cut(s)	6, 96, 253, 318, 434
BlsI	GCNGC	5 cut(s)	7, 97, 254, 319, 435
Bme1390I	CCNGG	4 cut(s)	237, 490, 507, 641
Bme18I	GGWCC	2 cut(s)	244, 399
BmeT110I	CYCGRG	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	234, 244, 399
BmiI	GGNNCC	4 cut(s)	179, 223, 457, 501
BmrFI	CCNGG	4 cut(s)	237, 490, 507, 641
BmrI	ACTGGG	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	176
BpiI	GAAGAC	1 cut(s)	318
BpmI	CTGGAG	1 cut(s)	692
Bpu10I	CCTNAGC	1 cut(s)	35
BpuMI	CCSGG	2 cut(s)	237, 490
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	2 cut(s)	461, 575
BsaJI	CCNNGG	6 cut(s)	142, 250, 459, 505, 506, 585
BsaXI	ACNNNNNCTCC	6 cut(s)	162, 192, 209, 213, 239, 243
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 231, 363, 510
Bse1I	ACTGG	2 cut(s)	171, 529
BseBI	CCWGG	2 cut(s)	507, 641
BseDI	CCNNGG	6 cut(s)	142, 250, 459, 505, 506, 585
BseGI	GGATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	4 cut(s)	118, 231, 363, 510
BseMII	CTCAG	2 cut(s)	26, 614
BseNI	ACTGG	2 cut(s)	171, 529
BsePI	GCGCGC	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	526
BseXI	GCAGC	1 cut(s)	445
BsgI	GTGCAG	1 cut(s)	388
Bsh1236I	CGCG	4 cut(s)	18, 78, 80, 252
BshFI	GGCC	3 cut(s)	104, 147, 235
BsiHKAI	GWGCWC	2 cut(s)	41, 312
BsiHKCI	CYCGRG	1 cut(s)	22
BsiSI	CCGG	2 cut(s)	237, 489
BslFI	GGGAC	3 cut(s)	40, 149, 183
BslI	CCNNNNNNNGG	4 cut(s)	118, 231, 363, 510
BsmAI	GTCTC	3 cut(s)	25, 461, 575
BsmBI	CGTCTC	1 cut(s)	25
BsmFI	GGGAC	3 cut(s)	40, 149, 183
BsmI	GAATGC	2 cut(s)	425, 436
BsnI	GGCC	3 cut(s)	104, 147, 235
Bso31I	GGTCTC	2 cut(s)	461, 575
BsoBI	CYCGRG	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	41, 312
Bsp143I	GATC	6 cut(s)	121, 186, 256, 267, 591, 619
BspACI	CCGC	8 cut(s)	5, 76, 96, 250, 252, 318, 347, 397
BspANI	GGCC	3 cut(s)	104, 147, 235
BspCNI	CTCAG	2 cut(s)	27, 615
BspFNI	CGCG	4 cut(s)	18, 78, 80, 252
BspLI	GGNNCC	4 cut(s)	179, 223, 457, 501
BspPI	GGATC	2 cut(s)	129, 586
BspTNI	GGTCTC	2 cut(s)	461, 575
BsrI	ACTGG	2 cut(s)	171, 529
BssECI	CCNNGG	6 cut(s)	142, 250, 459, 505, 506, 585
BssHII	GCGCGC	1 cut(s)	78
BssMI	GATC	6 cut(s)	121, 186, 256, 267, 591, 619
BssNI	GRCGYC	1 cut(s)	198
BssT1I	CCWWGG	2 cut(s)	459, 585
Bst2UI	CCWGG	2 cut(s)	507, 641
Bst4CI	ACNGT	7 cut(s)	174, 211, 274, 303, 389, 409, 664
Bst6I	CTCTTC	1 cut(s)	573
BstACI	GRCGYC	1 cut(s)	198
BstC8I	GCNNGC	5 cut(s)	16, 30, 80, 84, 149
BstDEI	CTNAG	2 cut(s)	35, 623
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	1 cut(s)	353
BstFNI	CGCG	4 cut(s)	18, 78, 80, 252
BstHHI	GCGC	2 cut(s)	80, 82
BstKTI	GATC	6 cut(s)	124, 189, 259, 270, 594, 622
BstMAI	GTCTC	3 cut(s)	25, 461, 575
BstMBI	GATC	6 cut(s)	121, 186, 256, 267, 591, 619
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 92, 101, 197
BstNI	CCWGG	2 cut(s)	507, 641
BstSCI	CCNGG	4 cut(s)	235, 488, 505, 639
BstUI	CGCG	4 cut(s)	18, 78, 80, 252
BstV1I	GCAGC	1 cut(s)	445
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	591
BstXI	CCANNNNNNTGG	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	591
BsuI	GTATCC	1 cut(s)	343
BsuRI	GGCC	3 cut(s)	104, 147, 235
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	1 cut(s)	353
BtsIMutI	CAGTG	2 cut(s)	164, 179
Cac8I	GCNNGC	5 cut(s)	16, 30, 80, 84, 149
CfoI	GCGC	2 cut(s)	80, 82
Cfr13I	GGNCC	3 cut(s)	234, 244, 399
Cfr42I	CCGCGG	1 cut(s)	253
CseI	GACGC	2 cut(s)	7, 206
CspCI	CAANNNNNGTGG	2 cut(s)	302, 337
CviAII	CATG	1 cut(s)	575
DdeI	CTNAG	2 cut(s)	35, 623
DpnI	GATC	6 cut(s)	123, 188, 258, 269, 593, 621
DpnII	GATC	6 cut(s)	121, 186, 256, 267, 591, 619
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Ecl136II	GAGCTC	1 cut(s)	39
Eco130I	CCWWGG	2 cut(s)	459, 585
Eco24I	GRGCYC	1 cut(s)	41
Eco31I	GGTCTC	2 cut(s)	461, 575
Eco47I	GGWCC	2 cut(s)	244, 399
Eco53kI	GAGCTC	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	22
EcoICRI	GAGCTC	1 cut(s)	39
EcoRI	GAATTC	1 cut(s)	516
EcoRII	CCWGG	2 cut(s)	505, 639
EcoT14I	CCWWGG	2 cut(s)	459, 585
EcoT22I	ATGCAT	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	41
ErhI	CCWWGG	2 cut(s)	459, 585
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	1 cut(s)	578
FaiI	YATR	6 cut(s)	107, 385, 449, 576, 614, 667
FaqI	GGGAC	3 cut(s)	40, 149, 183
FatI	CATG	1 cut(s)	574
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	5 cut(s)	6, 96, 253, 318, 434
FokI	GGATG	1 cut(s)	340
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	5 cut(s)	6, 96, 253, 318, 434
GlaI	GCGC	2 cut(s)	79, 81
GluI	GCNGC	5 cut(s)	6, 96, 253, 318, 434
GsuI	CTGGAG	1 cut(s)	692
HaeIII	GGCC	3 cut(s)	104, 147, 235
HapII	CCGG	2 cut(s)	237, 489
HgaI	GACGC	2 cut(s)	7, 206
HhaI	GCGC	2 cut(s)	80, 82
Hin1I	GRCGYC	1 cut(s)	198
Hin1II	CATG	1 cut(s)	578
Hin6I	GCGC	2 cut(s)	78, 80
HinP1I	GCGC	2 cut(s)	78, 80
HincII	GTYRAC	2 cut(s)	196, 214
HindII	GTYRAC	2 cut(s)	196, 214
HpaII	CCGG	2 cut(s)	237, 489
HphI	GGTGA	2 cut(s)	262, 539
Hpy166II	GTNNAC	3 cut(s)	196, 214, 530
Hpy188I	TCNGA	5 cut(s)	121, 522, 563, 570, 624
Hpy188III	TCNNGA	4 cut(s)	22, 296, 671, 688
Hpy8I	GTNNAC	3 cut(s)	196, 214, 530
Hpy99I	CGWCG	6 cut(s)	47, 121, 197, 200, 221, 278
HpyAV	CCTTC	3 cut(s)	76, 211, 446
HpyCH4III	ACNGT	7 cut(s)	174, 211, 274, 303, 389, 409, 664
HpyCH4V	TGCA	3 cut(s)	383, 405, 423
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 92, 101, 197
HpyF3I	CTNAG	2 cut(s)	35, 623
Hsp92I	GRCGYC	1 cut(s)	198
Hsp92II	CATG	1 cut(s)	578
HspAI	GCGC	2 cut(s)	78, 80
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	6 cut(s)	121, 186, 256, 267, 591, 619
LmnI	GCTCC	5 cut(s)	44, 183, 221, 290, 315
Lsp1109I	GCAGC	1 cut(s)	445
MaeIII	GTNAC	2 cut(s)	205, 370
MalI	GATC	6 cut(s)	123, 188, 258, 269, 593, 621
MboI	GATC	6 cut(s)	121, 186, 256, 267, 591, 619
MboII	GAAGA	2 cut(s)	318, 590
MflI	RGATCY	1 cut(s)	591
MhlI	GDGCHC	2 cut(s)	41, 312
MluCI	AATT	1 cut(s)	516
MmeI	TCCRAC	2 cut(s)	99, 545
MnlI	CCTC	9 cut(s)	18, 80, 137, 235, 257, 357, 504, 659, 667
Mph1103I	ATGCAT	1 cut(s)	425
MslI	CAYNNNNRTG	1 cut(s)	446
MspA1I	CMGCKG	2 cut(s)	252, 347
MspI	CCGG	2 cut(s)	237, 489
MspR9I	CCNGG	4 cut(s)	237, 490, 507, 641
Mva1269I	GAATGC	2 cut(s)	425, 436
MvaI	CCWGG	2 cut(s)	507, 641
MvnI	CGCG	4 cut(s)	18, 78, 80, 252
MwoI	GCNNNNNNNGC	4 cut(s)	11, 92, 101, 197
NciI	CCSGG	2 cut(s)	237, 490
NdeII	GATC	6 cut(s)	121, 186, 256, 267, 591, 619
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	4 cut(s)	179, 223, 457, 501
NmuCI	GTSAC	2 cut(s)	205, 370
NsiI	ATGCAT	1 cut(s)	425
PaeR7I	CTCGAG	1 cut(s)	22
PasI	CCCWGGG	1 cut(s)	506
PauI	GCGCGC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 225
PctI	GAATGC	2 cut(s)	425, 436
PfoI	TCCNGGA	1 cut(s)	639
PkrI	GCNGC	5 cut(s)	7, 97, 254, 319, 435
Psp124BI	GAGCTC	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	505, 639
PspGI	CCWGG	2 cut(s)	505, 639
PspN4I	GGNNCC	4 cut(s)	179, 223, 457, 501
PspPI	GGNCC	3 cut(s)	234, 244, 399
PsuI	RGATCY	1 cut(s)	591
PteI	GCGCGC	1 cut(s)	78
RseI	CAYNNNNRTG	1 cut(s)	446
SacI	GAGCTC	1 cut(s)	41
SacII	CCGCGG	1 cut(s)	253
SalI	GTCGAC	1 cut(s)	194
SatI	GCNGC	5 cut(s)	6, 96, 253, 318, 434
Sau3AI	GATC	6 cut(s)	121, 186, 256, 267, 591, 619
Sau96I	GGNCC	3 cut(s)	234, 244, 399
ScrFI	CCNGG	4 cut(s)	237, 490, 507, 641
SduI	GDGCHC	2 cut(s)	41, 312
SetI	ASST	8 cut(s)	16, 41, 68, 368, 457, 587, 651, 678
Sfr274I	CTCGAG	1 cut(s)	22
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SgrDI	CGTCGACG	1 cut(s)	194
SinI	GGWCC	2 cut(s)	244, 399
SlaI	CTCGAG	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	1 cut(s)	516
SsiI	CCGC	8 cut(s)	5, 76, 96, 250, 252, 318, 347, 397
SspI	AATATT	2 cut(s)	292, 635
SstI	GAGCTC	1 cut(s)	41
StyD4I	CCNGG	4 cut(s)	235, 488, 505, 639
StyI	CCWWGG	2 cut(s)	459, 585
TaaI	ACNGT	7 cut(s)	174, 211, 274, 303, 389, 409, 664
TaqI	TCGA	2 cut(s)	23, 195
TaqII	GACCGA	1 cut(s)	232
TasI	AATT	1 cut(s)	516
TauI	GCSGC	4 cut(s)	8, 98, 255, 320
TscAI	CASTG	2 cut(s)	171, 179
TseFI	GTSAC	2 cut(s)	205, 370
TseI	GCWGC	1 cut(s)	433
Tsp45I	GTSAC	2 cut(s)	205, 370
TspDTI	ATGAA	1 cut(s)	591
TspGWI	ACGGA	3 cut(s)	31, 217, 234
TspRI	CASTG	2 cut(s)	171, 179
VpaK11BI	GGWCC	2 cut(s)	244, 399
XapI	RAATTY	1 cut(s)	516
XcmI	CCANNNNNNNNNTGG	2 cut(s)	171, 667
XhoI	CTCGAG	1 cut(s)	22
XmiI	GTMKAC	1 cut(s)	195
Zsp2I	ATGCAT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.