Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011763

Physical Location & Seq

Genomic Coordinates Reverse (-)

18142618 .. 18144311

Gene Structure 1694 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G48940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGACTTTAGAGGAGCAGAAGAAAGTCATAATGCCCGAGGCCGTCGCATCGGAGCCATCACCACCATCCAAGGAGGAGAAGTCCGACGATTCGAAAGCTATTGTTCTCGTCGTCGCTGCAAAAGAACCTACGGAAGACAAGAAAGTAGGTTCAGTTCACCGAGATGCTGTTTTGGTTAGACTCGAGCAAGATAAGAGGATATCTCTAATCAAAGCTTGGGAAGAGGCTGAGAAATCCAAAGTGGAGAACAAAGCTCAGAAGAAGATTTCTTCAGTTGGAGCTTGGGAAAACAGCAAGAAAGCTTCTGTGGAAGCTGAGCTAAAAAAGATCGAGGAGCAACTAAATAAGAAGAAAGCACACTACACAGAGCAAATGAAGAACAAGATAGCTCAAATCCACAAGGAAGCTGAGGAGAAGAGAGCGATGACCGAAGCTAAACGCGGAGAAGATGTTCTCAAAGCCGAAGAAATGGCTGCAAAGTACCGTGCCACCGGAACTGCTCCAACCAAGCTATTTGGATTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0030246 GO:0031406 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043177 GO:0044464 GO:0048029 GO:0048032 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Remorin_C Remorin_N

Protein Analysis

175

Amino Acids

19.68

Weight (kDa)

9.02

Isoelectric Point (pI)

53.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Remorin_N	PF03766	19 - 60	8.3e-10	Remorin, N-terminal region
Remorin_C	PF03763	65 - 170	1.7e-35	Remorin, C-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48940
fragaria_vesca	FvH4_7g29430 FvH4_7g29430 FvH4_7g29430
malus_domestica	MD01G1200400.v1.1 MD07G1268200.v1.1
prunus_persica	Prupe.2G293900_v2.0.a1
pyrus_communis	pycom01g21040 pycom07g24580
rosa_chinensis	RchiOBHm_Chr1g0377211
rosa_laevigata	RLG00000026536
rosa_multiflora	Rmu_ssc0000155.1_g000010
rosa_roxburghii	Rroxscaffold_4G00281380
rosa_rugosa	Rorug01G0402100
rosa_samantha	Rh1AG419500 Rh1BG378600 Rh1CG392600 Rh1DG409200
rosa_wichuraiana	Rw1G036800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	441
AciI	CCGC	1 cut(s)	441
AcuI	CTGAAG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	482
AloI	GAACNNNNNNTCC	2 cut(s)	435, 467
Ama87I	CYCGRG	2 cut(s)	35, 182
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	2 cut(s)	116, 473
Asp700I	GAANNNNTTC	1 cut(s)	450
AsuHPI	GGTGA	2 cut(s)	51, 149
AsuII	TTCGAA	1 cut(s)	92
AvaI	CYCGRG	2 cut(s)	35, 182
BbsI	GAAGAC	1 cut(s)	141
BbvCI	CCTCAGC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	103, 460
BccI	CCATC	2 cut(s)	64, 73
BceAI	ACGGC	1 cut(s)	26
BisI	GCNGC	2 cut(s)	117, 474
BlpI	GCTNAGC	1 cut(s)	315
BlsI	GCNGC	2 cut(s)	118, 475
BmeT110I	CYCGRG	2 cut(s)	35, 182
BmiI	GGNNCC	1 cut(s)	54
BmsI	GCATC	2 cut(s)	56, 154
BpiI	GAAGAC	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	187, 219
Bpu10I	CCTNAGC	1 cut(s)	408
Bpu1102I	GCTNAGC	1 cut(s)	315
Bpu14I	TTCGAA	1 cut(s)	92
BsaJI	CCNNGG	2 cut(s)	36, 69
BsaWI	WCCGGW	1 cut(s)	491
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 435, 465
BseDI	CCNNGG	2 cut(s)	36, 69
BseGI	GGATG	1 cut(s)	65
BseMII	CTCAG	4 cut(s)	219, 269, 306, 399
BseRI	GAGGAG	4 cut(s)	26, 89, 347, 425
BseXI	GCAGC	2 cut(s)	103, 460
Bsh1236I	CGCG	1 cut(s)	441
BshFI	GGCC	1 cut(s)	41
BsiHKCI	CYCGRG	2 cut(s)	35, 182
BsiSI	CCGG	1 cut(s)	492
BsnI	GGCC	1 cut(s)	41
BsoBI	CYCGRG	2 cut(s)	35, 182
Bsp119I	TTCGAA	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	327
Bsp1720I	GCTNAGC	1 cut(s)	315
BspACI	CCGC	1 cut(s)	441
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	4 cut(s)	220, 268, 307, 400
BspFNI	CGCG	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	54
BspT104I	TTCGAA	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	36, 69
BssMI	GATC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	485
Bst6I	CTCTTC	2 cut(s)	216, 410
BstBI	TTCGAA	1 cut(s)	92
BstDEI	CTNAG	4 cut(s)	228, 255, 315, 408
BstF5I	GGATG	1 cut(s)	65
BstFNI	CGCG	1 cut(s)	441
BstKTI	GATC	1 cut(s)	330
BstMBI	GATC	1 cut(s)	327
BstUI	CGCG	1 cut(s)	441
BstV1I	GCAGC	2 cut(s)	103, 460
BstV2I	GAAGAC	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	41
BtgZI	GCGATG	1 cut(s)	437
BtsCI	GGATG	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	481
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	4 cut(s)	228, 255, 315, 408
DpnI	GATC	1 cut(s)	329
DpnII	GATC	1 cut(s)	327
Eam1104I	CTCTTC	2 cut(s)	216, 410
EarI	CTCTTC	2 cut(s)	216, 410
Eco130I	CCWWGG	1 cut(s)	69
Eco32I	GATATC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	255
Eco88I	CYCGRG	2 cut(s)	35, 182
EcoRV	GATATC	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaiI	YATR	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	117, 474
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	2 cut(s)	117, 474
GluI	GCNGC	2 cut(s)	117, 474
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	1 cut(s)	492
HindIII	AAGCTT	2 cut(s)	213, 300
HinfI	GANTC	3 cut(s)	89, 180, 519
HpaII	CCGG	1 cut(s)	492
HphI	GGTGA	2 cut(s)	51, 149
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	4 cut(s)	52, 85, 258, 527
Hpy8I	GTNNAC	1 cut(s)	157
Hpy99I	CGWCG	4 cut(s)	47, 89, 113, 116
HpyCH4III	ACNGT	1 cut(s)	485
HpyCH4V	TGCA	2 cut(s)	119, 476
HpyF3I	CTNAG	4 cut(s)	228, 255, 315, 408
Kzo9I	GATC	1 cut(s)	327
LmnI	GCTCC	5 cut(s)	13, 52, 278, 334, 505
LpnPI	CCDG	1 cut(s)	505
Lsp1109I	GCAGC	2 cut(s)	103, 460
LweI	GCATC	2 cut(s)	56, 154
MalI	GATC	1 cut(s)	329
MboI	GATC	1 cut(s)	327
MlyI	GAGTC	1 cut(s)	174
MmeI	TCCRAC	3 cut(s)	108, 256, 527
MnlI	CCTC	7 cut(s)	4, 31, 67, 189, 217, 325, 403
MroXI	GAANNNNTTC	1 cut(s)	450
MslI	CAYNNNNRTG	1 cut(s)	162
MspI	CCGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	441
NdeII	GATC	1 cut(s)	327
NlaIV	GGNNCC	1 cut(s)	54
NspV	TTCGAA	1 cut(s)	92
PaeR7I	CTCGAG	1 cut(s)	182
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	89, 519
PkrI	GCNGC	2 cut(s)	118, 475
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PspN4I	GGNNCC	1 cut(s)	54
PspXI	VCTCGAGB	1 cut(s)	182
PsrI	GAACNNNNNNTAC	2 cut(s)	138, 170
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
RseI	CAYNNNNRTG	1 cut(s)	162
SatI	GCNGC	2 cut(s)	117, 474
Sau3AI	GATC	1 cut(s)	327
SchI	GAGTC	1 cut(s)	174
SfaNI	GCATC	2 cut(s)	56, 154
Sfr274I	CTCGAG	1 cut(s)	182
SfuI	TTCGAA	1 cut(s)	92
SlaI	CTCGAG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SsiI	CCGC	1 cut(s)	441
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	485
TaqI	TCGA	3 cut(s)	92, 183, 330
TaqII	GACCGA	1 cut(s)	443
TfiI	GAWTC	2 cut(s)	89, 519
TseI	GCWGC	2 cut(s)	116, 473
TspDTI	ATGAA	1 cut(s)	389
TspGWI	ACGGA	1 cut(s)	146
XhoI	CTCGAG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.